AT2G28790

osmotin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014568
Physical Location & Seq
Reverse (-)
12354329 .. 12355570
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28790.2

Sequence Viewer

Length: 750 bp
ATGGCTAAAACCTCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTCATCTCCTTCTCCTCCGCCGTAGACACTTCCCGTCTCTTCCTCACCGTCGTCAACAACTGTCCCTTCACTGTCTGGCCAGCCATTCAACCCAACGCCGGCCACCCCGTCCTAGAGAAAGGTGGCTTCGCTCTCCCAACTTTCACTCACCGCTCCTTCAACGTTCCAACCACACACTGGTCCGGTCGCATCTGGGCCAGAACCTGGTGTGCCCACTACAACGGAAAATTCTCCTGCCTCACCGGAGACTGCGGAAACCGCCTGGAATGCAACGGTCTCGGCGGGGCACCACCAGCTTCTCTAGCTCAGTTCGACCTCCACCACGGTGGTCACCACGACTTCTCCTCTTACGGTGTCTCTCTCGTTGACGGTTACAATGTTCCGATGACCGTGACTCCTCACGAAGGCCATGGTGTCTGTCCTGTCGTTGGTTGTCGTGAAGATCTAATAAAAACGTGTCCGGCTCATCTTCAGGTCCGGTCACACAGTGGACACGTGGTGGCTTGTAAGAGTGGGTGTGAGGCTTTCCATACAGACGAGCTGTGTTGTCGTGGTCATTACAATAGCCCTAACACGTGTAAAGCTTCGAGCCATTCGCTGTTCTTTAAGCATGCGTGTCCTTCGAGTTTCACTTTTGCTCATGATAGTCCTTCGCTTATGCATGACTGTGCTTCTCCTAGAGAGCTCAAAGTCATCTTCTGCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

249

Amino Acids

27.02

Weight (kDa)

7.61

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 58 - 274 9.9e-75 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28790 AT2G28790
fragaria_vesca FvH4_3g35670
malus_domestica MD00G1137700.v1.1 MD02G1183000.v1.1
prunus_persica Prupe.6G080600_v2.0.a1
pyrus_communis pycom03g07950 pycom11g09260
rosa_chinensis RchiOBHm_Chr5g0063831
rosa_laevigata RLG00000035682
rosa_multiflora Rmu_co8120294.1_g000001 Rmu_sc0006498.1_g000004
rosa_roxburghii Rroxscaffold_1G00016950
rosa_rugosa Rorug05G0360700
rosa_samantha Rh5BG434900 Rh5CG458000
rosa_wichuraiana Rw5G039360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccB7I CCANNNNNTGG 2 cut(s) 219, 246
AccBSI CCGCTC 1 cut(s) 195
AccI GTMKAC 1 cut(s) 66
AciI CCGC 6 cut(s) 27, 60, 193, 294, 301, 324
AclI AACGTT 1 cut(s) 204
AcoI YGGCCR 2 cut(s) 119, 142
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 497
AcvI CACGTG 2 cut(s) 538, 618
AdeI CACNNNGTG 2 cut(s) 530, 541
AfiI CCNNNNNNNGG 5 cut(s) 140, 219, 246, 446, 470
AflIII ACRYGT 4 cut(s) 497, 535, 615, 617
AgsI TTSAA 2 cut(s) 131, 202
AjnI CCWGG 2 cut(s) 245, 303
AleI CACNNNNGTG 1 cut(s) 366
AluBI AGCT 5 cut(s) 338, 347, 583, 626, 727
AluI AGCT 5 cut(s) 338, 347, 583, 626, 727
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 4 cut(s) 83, 282, 323, 403
AlwNI CAGNNNCTG 1 cut(s) 246
AoxI GGCC 4 cut(s) 119, 142, 237, 448
ApoI RAATTY 1 cut(s) 269
AspS9I GGNCC 3 cut(s) 222, 237, 517
AsuHPI GGTGA 4 cut(s) 79, 182, 274, 365
AvaII GGWCC 2 cut(s) 222, 517
BaeGI GKGCMC 2 cut(s) 256, 331
BalI TGGCCA 1 cut(s) 121
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 729
BbrPI CACGTG 2 cut(s) 538, 618
Bbv12I GWGCWC 1 cut(s) 729
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 2 cut(s) 247, 305
BcoDI GTCTC 4 cut(s) 83, 282, 323, 403
BfaI CTAG 3 cut(s) 155, 344, 720
BglII AGATCT 1 cut(s) 484
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 247, 305
Bme18I GGWCC 2 cut(s) 222, 517
BmgT120I GGNCC 3 cut(s) 222, 237, 517
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 2 cut(s) 247, 305
BmsI GCATC 1 cut(s) 240
BsaAI YACGTR 2 cut(s) 538, 618
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 364, 451
BsaWI WCCGGW 3 cut(s) 224, 284, 519
BsaXI ACNNNNNCTCC 4 cut(s) 368, 398, 421, 451
Bsc4I CCNNNNNNNGG 5 cut(s) 140, 219, 246, 446, 470
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 2 cut(s) 247, 305
BseDI CCNNGG 2 cut(s) 364, 451
BseLI CCNNNNNNNGG 5 cut(s) 140, 219, 246, 446, 470
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 5 cut(s) 29, 32, 46, 376, 429
BseSI GKGCMC 2 cut(s) 256, 331
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 4 cut(s) 121, 144, 239, 450
BshNI GGYRCC 1 cut(s) 328
BsiEI CGRYCG 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 729
BsiSI CCGG 5 cut(s) 141, 225, 285, 503, 520
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 5 cut(s) 140, 219, 246, 446, 470
BsmAI GTCTC 4 cut(s) 83, 282, 323, 403
BsmBI CGTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 4 cut(s) 121, 144, 239, 450
Bso31I GGTCTC 1 cut(s) 323
Bsp1286I GDGCHC 3 cut(s) 256, 331, 729
Bsp143I GATC 1 cut(s) 484
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 6 cut(s) 27, 60, 193, 294, 301, 324
BspANI GGCC 4 cut(s) 121, 144, 239, 450
BspCNI CTCAG 1 cut(s) 361
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 323
BsrBI CCGCTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 364, 451
BssMI GATC 1 cut(s) 484
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 2 cut(s) 247, 305
Bst6I CTCTTC 2 cut(s) 21, 86
BstBAI YACGTR 2 cut(s) 538, 618
BstC8I GCNNGC 3 cut(s) 123, 142, 654
BstDEI CTNAG 1 cut(s) 348
BstDSI CCRYGG 2 cut(s) 364, 451
BstEII GGTNACC 1 cut(s) 371
BstENI CCTNNNNNAGG 1 cut(s) 444
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 4 cut(s) 83, 282, 323, 403
BstMBI GATC 1 cut(s) 484
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 4 cut(s) 300, 309, 335, 344
BstNI CCWGG 2 cut(s) 247, 305
BstNSI RCATGY 1 cut(s) 656
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 2 cut(s) 245, 303
BstSLI GKGCMC 2 cut(s) 256, 331
BstX2I RGATCY 1 cut(s) 484
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 4 cut(s) 121, 144, 239, 450
BtgI CCRYGG 2 cut(s) 364, 451
BtsIMutI CAGTG 3 cut(s) 111, 217, 535
Cac8I GCNNGC 3 cut(s) 123, 142, 654
CaiI CAGNNNCTG 1 cut(s) 246
CciI TCATGA 1 cut(s) 682
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 222, 237, 517
CsiI ACCWGGT 1 cut(s) 245
CviAII CATG 4 cut(s) 452, 653, 683, 704
DdeI CTNAG 1 cut(s) 348
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
DraIII CACNNNGTG 2 cut(s) 530, 541
EaeI YGGCCR 2 cut(s) 119, 142
Eam1104I CTCTTC 2 cut(s) 21, 86
EarI CTCTTC 2 cut(s) 21, 86
EciI GGCGGA 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 727
Eco130I CCWWGG 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 729
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 222, 517
Eco53kI GAGCTC 1 cut(s) 727
Eco57I CTGAAG 1 cut(s) 497
Eco72I CACGTG 2 cut(s) 538, 618
Eco91I GGTNACC 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 727
EcoNI CCTNNNNNAGG 1 cut(s) 444
EcoO65I GGTNACC 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 245, 303
EcoT14I CCWWGG 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 705
EcoT38I GRGCYC 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 451
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 4 cut(s) 455, 656, 686, 707
FaiI YATR 6 cut(s) 453, 573, 654, 684, 701, 705
FaqI GGGAC 1 cut(s) 90
FatI CATG 4 cut(s) 451, 652, 682, 703
FauI CCCGC 1 cut(s) 317
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 27
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 3 cut(s) 155, 344, 720
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 4 cut(s) 121, 144, 239, 450
HapII CCGG 5 cut(s) 141, 225, 285, 503, 520
Hin1II CATG 4 cut(s) 455, 656, 686, 707
HincII GTYRAC 2 cut(s) 97, 409
HindII GTYRAC 2 cut(s) 97, 409
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 1 cut(s) 436
HpaII CCGG 5 cut(s) 141, 225, 285, 503, 520
HphI GGTGA 4 cut(s) 79, 182, 274, 365
Hpy166II GTNNAC 4 cut(s) 67, 97, 409, 533
Hpy188I TCNGA 1 cut(s) 426
Hpy188III TCNNGA 3 cut(s) 443, 479, 683
Hpy8I GTNNAC 4 cut(s) 67, 97, 409, 533
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 7 cut(s) 43, 61, 118, 208, 440, 672, 702
HpyCH4IV ACGT 4 cut(s) 204, 497, 537, 617
HpyCH4V TGCA 2 cut(s) 312, 703
HpyF10VI GCNNNNNNNGC 4 cut(s) 300, 309, 335, 344
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 4 cut(s) 204, 497, 537, 617
Hsp92II CATG 4 cut(s) 455, 656, 686, 707
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 1 cut(s) 200
LweI GCATC 1 cut(s) 240
MabI ACCWGGT 1 cut(s) 245
MaeI CTAG 3 cut(s) 155, 344, 720
MaeII ACGT 4 cut(s) 204, 497, 537, 617
MaeIII GTNAC 4 cut(s) 371, 413, 433, 522
MalI GATC 1 cut(s) 486
MbiI CCGCTC 1 cut(s) 195
MboI GATC 1 cut(s) 484
MboII GAAGA 5 cut(s) 8, 73, 494, 503, 730
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 3 cut(s) 256, 331, 729
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 1 cut(s) 269
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 233
Mox20I TGGCCA 1 cut(s) 121
Mph1103I ATGCAT 1 cut(s) 705
MroNI GCCGGC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 121
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 2 cut(s) 366, 708
Msp20I TGGCCA 1 cut(s) 121
MspI CCGG 5 cut(s) 141, 225, 285, 503, 520
MspR9I CCNGG 2 cut(s) 247, 305
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 2 cut(s) 247, 305
MwoI GCNNNNNNNGC 4 cut(s) 300, 309, 335, 344
NaeI GCCGGC 1 cut(s) 142
NcoI CCATGG 1 cut(s) 451
NdeII GATC 1 cut(s) 484
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 4 cut(s) 455, 656, 686, 707
NlaIV GGNNCC 1 cut(s) 330
NmeAIII GCCGAG 1 cut(s) 300
NmuCI GTSAC 3 cut(s) 371, 433, 522
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 1 cut(s) 656
OliI CACNNNNGTG 1 cut(s) 366
PaeI GCATGC 1 cut(s) 656
PagI TCATGA 1 cut(s) 682
PctI GAATGC 1 cut(s) 314
PdiI GCCGGC 1 cut(s) 142
PflMI CCANNNNNTGG 2 cut(s) 219, 246
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 430
PmaCI CACGTG 2 cut(s) 538, 618
PmlI CACGTG 2 cut(s) 538, 618
PpsI GAGTC 1 cut(s) 430
Ppu21I YACGTR 2 cut(s) 538, 618
Psp124BI GAGCTC 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 245, 303
PspCI CACGTG 2 cut(s) 538, 618
PspEI GGTNACC 1 cut(s) 371
PspGI CCWGG 2 cut(s) 245, 303
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 3 cut(s) 222, 237, 517
PstNI CAGNNNCTG 1 cut(s) 246
PsuI RGATCY 1 cut(s) 484
RseI CAYNNNNRTG 2 cut(s) 366, 708
SacI GAGCTC 1 cut(s) 729
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 3 cut(s) 222, 237, 517
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 2 cut(s) 247, 305
SduI GDGCHC 3 cut(s) 256, 331, 729
SexAI ACCWGGT 1 cut(s) 245
SfaNI GCATC 1 cut(s) 240
SinI GGWCC 2 cut(s) 222, 517
SmiMI CAYNNNNRTG 2 cut(s) 366, 708
SphI GCATGC 1 cut(s) 656
Sse9I AATT 1 cut(s) 269
SsiI CCGC 6 cut(s) 27, 60, 193, 294, 301, 324
SspMI CTAG 3 cut(s) 155, 344, 720
SstI GAGCTC 1 cut(s) 729
StyD4I CCNGG 2 cut(s) 245, 303
StyI CCWWGG 1 cut(s) 451
TaiI ACGT 4 cut(s) 207, 500, 540, 620
TaqI TCGA 3 cut(s) 354, 629, 665
TasI AATT 1 cut(s) 269
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 3 cut(s) 118, 224, 535
TseFI GTSAC 3 cut(s) 371, 433, 522
Tsp45I GTSAC 3 cut(s) 371, 433, 522
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 3 cut(s) 118, 224, 535
Van91I CCANNNNNTGG 2 cut(s) 219, 246
VpaK11BI GGWCC 2 cut(s) 222, 517
XagI CCTNNNNNAGG 1 cut(s) 444
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 3 cut(s) 155, 344, 720
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.