Rorug05G0360700

Osmotin-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
47576854 .. 47577247
394 bp
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UTR
Exon/CDS
Intron
Rorug05G0360700.1

Sequence Viewer

Length: 312 bp
ATGGTGAGGGTTAGCGTGCTGAATGATGCTCTCAAGAGCATGTACAATGCGGAGAAACGTGATAAGCGTCAGGTGATGATCAGGCCGTCATCCAAAGTGATCATCAAGTTCCTTATTGTCATGCAGAAGAATGGATACATTGGAGAGTTCGAGTATGTCGTCAGACCACAGGAGATTGAAGGTTGGGCTGCTAGGTTGCTTCCTTCAAGACAGTTTAGATATATCGTGCTCACCACTTCTGCTGGCATCATGGACCATGAAGAGGCTAGAAGAAAGAATGTCGGTGGGAAAGTTCTTGGTTTCTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.98

Weight (kDa)

10.05

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 54 2.5e-08 Ribosomal protein S8
Ribosomal_S8 PF00410 73 - 103 8.8e-07 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28790 AT2G28790
fragaria_vesca FvH4_3g35670
malus_domestica MD00G1137700.v1.1 MD02G1183000.v1.1
prunus_persica Prupe.6G080600_v2.0.a1
pyrus_communis pycom03g07950 pycom11g09260
rosa_chinensis RchiOBHm_Chr5g0063831
rosa_laevigata RLG00000035682
rosa_multiflora Rmu_co8120294.1_g000001 Rmu_sc0006498.1_g000004
rosa_roxburghii Rroxscaffold_1G00016950
rosa_rugosa Rorug05G0360700
rosa_samantha Rh5BG434900 Rh5CG458000
rosa_wichuraiana Rw5G039360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 50
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 179, 207
Alw21I GWGCWC 1 cut(s) 231
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 16, 85, 223
AvaII GGWCC 1 cut(s) 253
BarI GAAGNNNNNNTAC 2 cut(s) 119, 151
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 70
BciVI GTATCC 1 cut(s) 128
BclI TGATCA 2 cut(s) 78, 99
BfaI CTAG 2 cut(s) 192, 267
BfuI GTATCC 1 cut(s) 128
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 253
BmsI GCATC 2 cut(s) 16, 255
BpuEI CTTGAG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 175
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 262
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 78, 99
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 42
BssMI GATC 2 cut(s) 78, 99
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 17, 244
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 81, 102
BstMBI GATC 2 cut(s) 78, 99
BstNSI RCATGY 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 175
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 17, 244
Cfr13I GGNCC 1 cut(s) 253
CseI GACGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 43
CviAII CATG 4 cut(s) 40, 121, 250, 257
CviJI RGCY 3 cut(s) 85, 188, 266
CviKI_1 RGCY 3 cut(s) 85, 188, 266
CviQI GTAC 1 cut(s) 43
DpnI GATC 2 cut(s) 80, 101
DpnII GATC 2 cut(s) 78, 99
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 253
FaeI CATG 4 cut(s) 43, 124, 253, 260
FaiI YATR 6 cut(s) 41, 122, 156, 222, 251, 258
FatI CATG 4 cut(s) 39, 120, 249, 256
FbaI TGATCA 2 cut(s) 78, 99
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 192, 267
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 85
HgaI GACGC 1 cut(s) 56
Hin1II CATG 4 cut(s) 43, 124, 253, 260
HphI GGTGA 3 cut(s) 16, 85, 223
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 2 cut(s) 34, 207
HpyAV CCTTC 2 cut(s) 173, 213
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 4 cut(s) 43, 124, 253, 260
Ksp22I TGATCA 2 cut(s) 78, 99
Kzo9I GATC 2 cut(s) 78, 99
LpnPI CCDG 4 cut(s) 56, 67, 155, 228
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 2 cut(s) 16, 255
MaeI CTAG 2 cut(s) 192, 267
MaeII ACGT 1 cut(s) 58
MalI GATC 2 cut(s) 80, 101
MboI GATC 2 cut(s) 78, 99
MboII GAAGA 3 cut(s) 139, 272, 282
MhlI GDGCHC 1 cut(s) 231
MnlI CCTC 1 cut(s) 256
NdeII GATC 2 cut(s) 78, 99
NlaIII CATG 4 cut(s) 43, 124, 253, 260
NspI RCATGY 1 cut(s) 43
PcsI WCGNNNNNNNCGW 2 cut(s) 64, 156
PkrI GCNGC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 253
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 2 cut(s) 78, 99
Sau96I GGNCC 1 cut(s) 253
SduI GDGCHC 1 cut(s) 231
SetI ASST 4 cut(s) 61, 75, 184, 197
SfaNI GCATC 2 cut(s) 16, 255
SinI GGWCC 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SsiI CCGC 1 cut(s) 50
SspMI CTAG 2 cut(s) 192, 267
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 150
TatI WGTACW 1 cut(s) 42
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 253
XceI RCATGY 1 cut(s) 43
XspI CTAG 2 cut(s) 192, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.