Rmu_co8120294.1_g000001

Osmotin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8120294.1
OG0014568
Physical Location & Seq
Forward (+)
1 .. 351
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8120294.1_g000001.1.cds

Sequence Viewer

Length: 351 bp
gtcgacgggtttaacatccccatgacggtgaccccgcacgaggggaagggcgtctgccccgtcgtcggctgcaaggccaacttactggccacgtgtcccgataggctgcaggtgaggtcacccgccggtcacggccccgtggtggcgtgcaagagcgcgtgcgaggcgttcggcaccgacgagctgtgctgtcggaacaagtacaacagccctcatacgtgtagggcgtcgagcttttcgcagtacttcaagcaagcgtgtccggctacgtttacgtacgcgcacgacagccccacgctcatgcaccagtgctcgtcgccacgtgagctcaaggtcatcttctgccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

116

Amino Acids

12.58

Weight (kDa)

8.33

Isoelectric Point (pI)

66.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28790 AT2G28790
fragaria_vesca FvH4_3g35670
malus_domestica MD00G1137700.v1.1 MD02G1183000.v1.1
prunus_persica Prupe.6G080600_v2.0.a1
pyrus_communis pycom03g07950 pycom11g09260
rosa_chinensis RchiOBHm_Chr5g0063831
rosa_laevigata RLG00000035682
rosa_multiflora Rmu_co8120294.1_g000001 Rmu_sc0006498.1_g000004
rosa_roxburghii Rroxscaffold_1G00016950
rosa_rugosa Rorug05G0360700
rosa_samantha Rh5BG434900 Rh5CG458000
rosa_wichuraiana Rw5G039360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 3
AccII CGCG 2 cut(s) 158, 281
AciI CCGC 2 cut(s) 35, 123
AcoI YGGCCR 1 cut(s) 87
AcvI CACGTG 2 cut(s) 93, 323
AcyI GRCGYC 2 cut(s) 51, 227
AfaI GTAC 3 cut(s) 203, 245, 278
AfiI CCNNNNNNNGG 5 cut(s) 25, 40, 41, 65, 142
AflIII ACRYGT 2 cut(s) 92, 218
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 3 cut(s) 184, 234, 328
AluI AGCT 3 cut(s) 184, 234, 328
Alw21I GWGCWC 2 cut(s) 314, 330
AoxI GGCC 3 cut(s) 75, 87, 133
ApeKI GCWGC 2 cut(s) 69, 106
AspLEI GCGC 2 cut(s) 158, 283
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 3 cut(s) 40, 111, 124
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 330
BauI CACGAG 1 cut(s) 38
BbrPI CACGTG 2 cut(s) 93, 323
Bbv12I GWGCWC 2 cut(s) 314, 330
BbvI GCAGC 2 cut(s) 56, 93
BceAI ACGGC 1 cut(s) 148
BfaI CTAG 1 cut(s) 349
BfmI CTRYAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 2 cut(s) 70, 107
BlsI GCNGC 2 cut(s) 71, 108
BmcAI AGTACT 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 136, 175
BpuEI CTTGAG 1 cut(s) 314
BsaAI YACGTR 4 cut(s) 93, 219, 276, 323
BsaHI GRCGYC 2 cut(s) 51, 227
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 40, 41, 65, 142
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 90, 307
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 5 cut(s) 25, 40, 41, 65, 142
BseNI ACTGG 2 cut(s) 90, 307
BseXI GCAGC 2 cut(s) 56, 93
Bsh1236I CGCG 2 cut(s) 158, 281
BshFI GGCC 3 cut(s) 77, 89, 135
BshNI GGYRCC 1 cut(s) 173
BsiHKAI GWGCWC 2 cut(s) 314, 330
BsiSI CCGG 2 cut(s) 126, 263
BsiWI CGTACG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 5 cut(s) 25, 40, 41, 65, 142
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 3 cut(s) 77, 89, 135
Bsp1286I GDGCHC 2 cut(s) 314, 330
BspACI CCGC 2 cut(s) 35, 123
BspANI GGCC 3 cut(s) 77, 89, 135
BspFNI CGCG 2 cut(s) 158, 281
BspLI GGNNCC 2 cut(s) 136, 175
BspMAI CTGCAG 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 2 cut(s) 90, 307
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 138
BssNI GRCGYC 2 cut(s) 51, 227
BssSI CACGAG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 28
BstACI GRCGYC 2 cut(s) 51, 227
BstBAI YACGTR 4 cut(s) 93, 219, 276, 323
BstC8I GCNNGC 3 cut(s) 148, 160, 255
BstDSI CCRYGG 1 cut(s) 138
BstEII GGTNACC 2 cut(s) 28, 117
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 2 cut(s) 158, 281
BstHHI GCGC 2 cut(s) 158, 283
BstMWI GCNNNNNNNGC 3 cut(s) 164, 263, 325
BstPI GGTNACC 2 cut(s) 28, 117
BstSFI CTRYAG 1 cut(s) 107
BstSNI TACGTA 1 cut(s) 276
BstUI CGCG 2 cut(s) 158, 281
BstV1I GCAGC 2 cut(s) 56, 93
BstXI CCANNNNNNTGG 1 cut(s) 85
BsuRI GGCC 3 cut(s) 77, 89, 135
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 314
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 3 cut(s) 148, 160, 255
CfoI GCGC 2 cut(s) 158, 283
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 134
CseI GACGC 2 cut(s) 40, 216
Csp6I GTAC 3 cut(s) 202, 244, 277
CviAII CATG 2 cut(s) 22, 301
CviQI GTAC 3 cut(s) 202, 244, 277
EaeI YGGCCR 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 328
Eco105I TACGTA 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 328
Eco72I CACGTG 2 cut(s) 93, 323
Eco91I GGTNACC 2 cut(s) 28, 117
EcoICRI GAGCTC 1 cut(s) 328
EcoO65I GGTNACC 2 cut(s) 28, 117
EcoT38I GRGCYC 1 cut(s) 330
FaeI CATG 2 cut(s) 25, 304
FaiI YATR 3 cut(s) 23, 216, 302
FalI AAGNNNNNCTT 3 cut(s) 65, 97, 323
FaqI GGGAC 1 cut(s) 81
FatI CATG 2 cut(s) 21, 300
FauI CCCGC 2 cut(s) 42, 130
FblI GTMKAC 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 70, 107
FokI GGATG 1 cut(s) 2
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 2 cut(s) 70, 107
FspBI CTAG 1 cut(s) 349
GlaI GCGC 2 cut(s) 157, 282
GluI GCNGC 2 cut(s) 70, 107
HaeIII GGCC 3 cut(s) 77, 89, 135
HapII CCGG 2 cut(s) 126, 263
HgaI GACGC 2 cut(s) 40, 216
HhaI GCGC 2 cut(s) 158, 283
Hin1I GRCGYC 2 cut(s) 51, 227
Hin1II CATG 2 cut(s) 25, 304
Hin6I GCGC 2 cut(s) 156, 281
HinP1I GCGC 2 cut(s) 156, 281
HincII GTYRAC 1 cut(s) 4
HindII GTYRAC 1 cut(s) 4
HpaII CCGG 2 cut(s) 126, 263
HphI GGTGA 3 cut(s) 40, 111, 124
Hpy166II GTNNAC 2 cut(s) 4, 273
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 2 cut(s) 4, 273
Hpy99I CGWCG 6 cut(s) 8, 65, 68, 182, 232, 319
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 5 cut(s) 92, 218, 269, 275, 322
HpyCH4V TGCA 4 cut(s) 72, 109, 150, 304
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 263, 325
HpySE526I ACGT 5 cut(s) 92, 218, 269, 275, 322
Hsp92I GRCGYC 2 cut(s) 51, 227
Hsp92II CATG 2 cut(s) 25, 304
HspAI GCGC 2 cut(s) 156, 281
LpnPI CCDG 5 cut(s) 71, 95, 139, 276, 320
Lsp1109I GCAGC 2 cut(s) 56, 93
MaeI CTAG 1 cut(s) 349
MaeII ACGT 5 cut(s) 92, 218, 269, 275, 322
MaeIII GTNAC 3 cut(s) 28, 117, 128
MboII GAAGA 1 cut(s) 331
MhlI GDGCHC 2 cut(s) 314, 330
MlsI TGGCCA 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 4 cut(s) 34, 108, 157, 222
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 3 cut(s) 20, 26, 299
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 2 cut(s) 126, 263
MvnI CGCG 2 cut(s) 158, 281
MwoI GCNNNNNNNGC 3 cut(s) 164, 263, 325
NlaIII CATG 2 cut(s) 25, 304
NlaIV GGNNCC 2 cut(s) 136, 175
NmuCI GTSAC 3 cut(s) 28, 117, 128
PaqCI CACCTGC 1 cut(s) 100
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 224
Pfl23II CGTACG 1 cut(s) 276
PkrI GCNGC 2 cut(s) 71, 108
PmaCI CACGTG 2 cut(s) 93, 323
PmlI CACGTG 2 cut(s) 93, 323
Ppu21I YACGTR 4 cut(s) 93, 219, 276, 323
Psp124BI GAGCTC 1 cut(s) 330
PspCI CACGTG 2 cut(s) 93, 323
PspEI GGTNACC 2 cut(s) 28, 117
PspLI CGTACG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 136, 175
PspPI GGNCC 1 cut(s) 134
PstI CTGCAG 1 cut(s) 111
RsaI GTAC 3 cut(s) 203, 245, 278
RsaNI GTAC 3 cut(s) 202, 244, 277
RseI CAYNNNNRTG 3 cut(s) 20, 26, 299
SacI GAGCTC 1 cut(s) 330
SalI GTCGAC 1 cut(s) 2
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 70, 107
Sau96I GGNCC 1 cut(s) 134
ScaI AGTACT 1 cut(s) 245
SduI GDGCHC 2 cut(s) 314, 330
SfcI CTRYAG 1 cut(s) 107
SmiMI CAYNNNNRTG 3 cut(s) 20, 26, 299
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SnaBI TACGTA 1 cut(s) 276
SsiI CCGC 2 cut(s) 35, 123
SspMI CTAG 1 cut(s) 349
SstI GAGCTC 1 cut(s) 330
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 5 cut(s) 95, 221, 272, 278, 325
TaqI TCGA 2 cut(s) 3, 230
TatI WGTACW 2 cut(s) 201, 243
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 314
TseFI GTSAC 3 cut(s) 28, 117, 128
TseI GCWGC 2 cut(s) 69, 106
Tsp45I GTSAC 3 cut(s) 28, 117, 128
TspRI CASTG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 3
XspI CTAG 1 cut(s) 349
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.