pycom11g09260

Osmotin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014568
Physical Location & Seq
Forward (+)
7431493 .. 7432281
789 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09260.1

Sequence Viewer

Length: 789 bp
ATGGCTTCCTCTCGCTCTTACTCTCGTTCACTCTCACTCCTCTCCGCAACCACTCTCCTGATCCTCTCCGCCACATTCCTGATCCTATCCACCGTTGCCCACGCCAATAAGCATCCACAATCCATCCTGACTGTCGTCAACAACTGCCCCTTCCCCATCTGGCCCGCCATCCAGCCCAACTCCGGCCACCCCGTCCTTGAACGCGGCGGCTTCTTCCTCAAAGCCTTCAACCATCGCTCCTTCCCCACCCCCATCCAGCCCTGGTCCGGCCGCATCTGGGCCCGTACCCATTGCACCCAAAAGGGACCTCGCCTCTCCTGCCTCACCGGCGACTGCGGCGGCCGTCTCGAGTGCAACGGAGCCGGAGGCGCTGCCCCGTCCACCCTCGCGCAGATAGACCTCCACCAAGGCGGCCCCCGTGACCTATTCTCCTACGGCGTCAGCCTCGTCGATGGCTTCAACGTCCCCCTGACCATCACCCCTCACAAGGGCCACGGCCAGTGCCCCGTCGTCGGTTGCAAGGCCAACCTGCTCGCCACGTGTCCCGACCGACTGAAGGTGAAGTCACCGAAGGGCGTCGTGGCGTGCAAGAGCGGGTGCCAGGCGTTCGGCACGGACAAGCTGTGCTGTCGGAACCACTACAACAGCCCCCAGACTTGCCGGGCTTCGAGCTACTCCAAGTTCTTCAAGCGCGCGTGTCCCACCACCTTCACGTTCGCCTACGACAGCCCTGCGCTCATGCACCAGTGCTCGTCGCCACGCGAGCTCAAGGTCATCTTCTGTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

263

Amino Acids

28.29

Weight (kDa)

9.46

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 47 - 262 2e-72 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28790 AT2G28790
fragaria_vesca FvH4_3g35670
malus_domestica MD00G1137700.v1.1 MD02G1183000.v1.1
prunus_persica Prupe.6G080600_v2.0.a1
pyrus_communis pycom03g07950 pycom11g09260
rosa_chinensis RchiOBHm_Chr5g0063831
rosa_laevigata RLG00000035682
rosa_multiflora Rmu_co8120294.1_g000001 Rmu_sc0006498.1_g000004
rosa_roxburghii Rroxscaffold_1G00016950
rosa_rugosa Rorug05G0360700
rosa_samantha Rh5BG434900 Rh5CG458000
rosa_wichuraiana Rw5G039360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 537
AccB1I GGYRCC 1 cut(s) 597
AccBSI CCGCTC 1 cut(s) 594
AccII CGCG 5 cut(s) 204, 389, 693, 695, 762
AclWI GGATC 2 cut(s) 55, 76
AcoI YGGCCR 4 cut(s) 184, 268, 340, 496
AcuI CTGAAG 1 cut(s) 575
AcvI CACGTG 1 cut(s) 540
AcyI GRCGYC 2 cut(s) 438, 576
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 7 cut(s) 182, 266, 277, 487, 488, 512, 556
AflIII ACRYGT 1 cut(s) 539
AgsI TTSAA 4 cut(s) 200, 229, 460, 688
AjnI CCWGG 2 cut(s) 260, 600
AluBI AGCT 3 cut(s) 622, 672, 766
AluI AGCT 3 cut(s) 622, 672, 766
Alw21I GWGCWC 2 cut(s) 752, 768
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 2 cut(s) 55, 76
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 9 cut(s) 161, 184, 268, 279, 340, 412, 490, 496, 522
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 371
AspLEI GCGC 5 cut(s) 371, 391, 693, 695, 736
AspS9I GGNCC 7 cut(s) 162, 264, 279, 280, 305, 413, 490
AsuC2I CCSGG 1 cut(s) 662
AsuHPI GGTGA 4 cut(s) 316, 469, 558, 571
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 2 cut(s) 264, 305
BaeGI GKGCMC 2 cut(s) 283, 506
BanI GGYRCC 1 cut(s) 597
BanII GRGCYC 2 cut(s) 283, 768
BbrPI CACGTG 1 cut(s) 540
Bbv12I GWGCWC 2 cut(s) 752, 768
BbvI GCAGC 1 cut(s) 358
BccI CCATC 7 cut(s) 131, 164, 176, 240, 260, 446, 482
BceAI ACGGC 3 cut(s) 327, 451, 511
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 2 cut(s) 262, 602
BcnI CCSGG 1 cut(s) 662
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 787
BfoI RGCGCY 1 cut(s) 372
BfuAI ACCTGC 1 cut(s) 537
BglI GCCNNNNNGGC 1 cut(s) 327
BisI GCNGC 7 cut(s) 205, 208, 271, 337, 340, 372, 412
BlsI GCNGC 7 cut(s) 206, 209, 272, 338, 341, 373, 413
Bme1390I CCNGG 3 cut(s) 262, 602, 662
Bme18I GGWCC 2 cut(s) 264, 305
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 7 cut(s) 162, 264, 279, 280, 305, 413, 490
BmiI GGNNCC 6 cut(s) 281, 306, 361, 415, 599, 635
BmrFI CCNGG 3 cut(s) 262, 602, 662
BmsI GCATC 2 cut(s) 121, 282
BoxI GACNNNNGTC 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 752
BpuMI CCSGG 1 cut(s) 662
BsaAI YACGTR 1 cut(s) 540
BsaHI GRCGYC 2 cut(s) 438, 576
BsaJI CCNNGG 3 cut(s) 260, 406, 493
BsaXI ACNNNNNCTCC 6 cut(s) 21, 51, 221, 251, 413, 443
Bsc4I CCNNNNNNNGG 7 cut(s) 182, 266, 277, 487, 488, 512, 556
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 499, 745
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 2 cut(s) 262, 602
BseDI CCNNGG 3 cut(s) 260, 406, 493
BseGI GGATG 4 cut(s) 112, 123, 168, 252
BseLI CCNNNNNNNGG 7 cut(s) 182, 266, 277, 487, 488, 512, 556
BseMI GCAATG 1 cut(s) 289
BseNI ACTGG 2 cut(s) 499, 745
BsePI GCGCGC 1 cut(s) 691
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 2 cut(s) 283, 506
BseX3I CGGCCG 2 cut(s) 268, 340
BseXI GCAGC 1 cut(s) 358
Bsh1236I CGCG 5 cut(s) 204, 389, 693, 695, 762
Bsh1285I CGRYCG 3 cut(s) 271, 343, 550
BshFI GGCC 9 cut(s) 163, 186, 270, 281, 342, 414, 492, 498, 524
BshNI GGYRCC 1 cut(s) 597
BsiEI CGRYCG 3 cut(s) 271, 343, 550
BsiHKAI GWGCWC 2 cut(s) 752, 768
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 5 cut(s) 183, 267, 327, 363, 661
BslFI GGGAC 5 cut(s) 318, 449, 528, 684, 768
BslI CCNNNNNNNGG 7 cut(s) 182, 266, 277, 487, 488, 512, 556
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 5 cut(s) 318, 449, 528, 684, 768
BsnI GGCC 9 cut(s) 163, 186, 270, 281, 342, 414, 492, 498, 524
BsoBI CYCGRG 1 cut(s) 347
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 4 cut(s) 283, 506, 752, 768
Bsp143I GATC 2 cut(s) 60, 81
BspANI GGCC 9 cut(s) 163, 186, 270, 281, 342, 414, 492, 498, 524
BspFNI CGCG 5 cut(s) 204, 389, 693, 695, 762
BspLI GGNNCC 6 cut(s) 281, 306, 361, 415, 599, 635
BspMI ACCTGC 1 cut(s) 537
BspPI GGATC 2 cut(s) 55, 76
BspT107I GGYRCC 1 cut(s) 597
BsrBI CCGCTC 1 cut(s) 594
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 2 cut(s) 499, 745
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 260, 406, 493
BssHII GCGCGC 1 cut(s) 691
BssMI GATC 2 cut(s) 60, 81
BssNI GRCGYC 2 cut(s) 438, 576
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 2 cut(s) 262, 602
Bst4CI ACNGT 2 cut(s) 94, 133
BstACI GRCGYC 2 cut(s) 438, 576
BstBAI YACGTR 1 cut(s) 540
BstC8I GCNNGC 5 cut(s) 165, 534, 586, 693, 764
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 4 cut(s) 112, 123, 168, 252
BstFNI CGCG 5 cut(s) 204, 389, 693, 695, 762
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 5 cut(s) 371, 391, 693, 695, 736
BstKTI GATC 2 cut(s) 63, 84
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 2 cut(s) 60, 81
BstMCI CGRYCG 3 cut(s) 271, 343, 550
BstMWI GCNNNNNNNGC 5 cut(s) 318, 327, 336, 368, 763
BstNI CCWGG 2 cut(s) 262, 602
BstPAI GACNNNNGTC 1 cut(s) 134
BstSCI CCNGG 3 cut(s) 260, 600, 660
BstSLI GKGCMC 2 cut(s) 283, 506
BstUI CGCG 5 cut(s) 204, 389, 693, 695, 762
BstV1I GCAGC 1 cut(s) 358
BstZI CGGCCG 2 cut(s) 268, 340
BsuRI GGCC 9 cut(s) 163, 186, 270, 281, 342, 414, 492, 498, 524
BtgI CCRYGG 1 cut(s) 493
BtgZI GCGATG 1 cut(s) 218
BtsCI GGATG 4 cut(s) 112, 123, 168, 252
BtsIMutI CAGTG 2 cut(s) 506, 752
BveI ACCTGC 1 cut(s) 537
Cac8I GCNNGC 5 cut(s) 165, 534, 586, 693, 764
CfoI GCGC 5 cut(s) 371, 391, 693, 695, 736
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 7 cut(s) 162, 264, 279, 280, 305, 413, 490
CseI GACGC 2 cut(s) 427, 565
Csp6I GTAC 1 cut(s) 285
CviAII CATG 1 cut(s) 739
CviQI GTAC 1 cut(s) 285
DpnI GATC 2 cut(s) 62, 83
DpnII GATC 2 cut(s) 60, 81
EaeI YGGCCR 4 cut(s) 184, 268, 340, 496
EagI CGGCCG 2 cut(s) 268, 340
EciI GGCGGA 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 766
EclXI CGGCCG 2 cut(s) 268, 340
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 2 cut(s) 283, 768
Eco47I GGWCC 2 cut(s) 264, 305
Eco52I CGGCCG 2 cut(s) 268, 340
Eco53kI GAGCTC 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 575
Eco72I CACGTG 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 766
EcoO109I RGGNCCY 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 260, 600
EcoT14I CCWWGG 1 cut(s) 406
EcoT38I GRGCYC 2 cut(s) 283, 768
ErhI CCWWGG 1 cut(s) 406
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 1 cut(s) 742
FaiI YATR 1 cut(s) 740
FalI AAGNNNNNCTT 1 cut(s) 761
FaqI GGGAC 5 cut(s) 318, 449, 528, 684, 768
FatI CATG 1 cut(s) 738
FauI CCCGC 2 cut(s) 172, 587
Fnu4HI GCNGC 7 cut(s) 205, 208, 271, 337, 340, 372, 412
FokI GGATG 4 cut(s) 99, 110, 155, 239
FriOI GRGCYC 2 cut(s) 283, 768
Fsp4HI GCNGC 7 cut(s) 205, 208, 271, 337, 340, 372, 412
FspBI CTAG 1 cut(s) 787
GlaI GCGC 5 cut(s) 370, 390, 692, 694, 735
GluI GCNGC 7 cut(s) 205, 208, 271, 337, 340, 372, 412
HaeII RGCGCY 1 cut(s) 372
HaeIII GGCC 9 cut(s) 163, 186, 270, 281, 342, 414, 492, 498, 524
HapII CCGG 5 cut(s) 183, 267, 327, 363, 661
HgaI GACGC 2 cut(s) 427, 565
HhaI GCGC 5 cut(s) 371, 391, 693, 695, 736
Hin1I GRCGYC 2 cut(s) 438, 576
Hin1II CATG 1 cut(s) 742
Hin6I GCGC 5 cut(s) 369, 389, 691, 693, 734
HinP1I GCGC 5 cut(s) 369, 389, 691, 693, 734
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HpaII CCGG 5 cut(s) 183, 267, 327, 363, 661
HphI GGTGA 4 cut(s) 316, 469, 558, 571
Hpy166II GTNNAC 3 cut(s) 29, 139, 381
Hpy188I TCNGA 1 cut(s) 633
Hpy188III TCNNGA 5 cut(s) 58, 79, 127, 347, 545
Hpy8I GTNNAC 3 cut(s) 29, 139, 381
Hpy99I CGWCG 5 cut(s) 452, 512, 515, 581, 757
HpyAV CCTTC 6 cut(s) 160, 235, 250, 550, 565, 718
HpyCH4III ACNGT 2 cut(s) 94, 133
HpyCH4IV ACGT 3 cut(s) 462, 539, 713
HpyCH4V TGCA 5 cut(s) 294, 354, 519, 588, 742
HpyF10VI GCNNNNNNNGC 5 cut(s) 318, 327, 336, 368, 763
HpySE526I ACGT 3 cut(s) 462, 539, 713
Hsp92I GRCGYC 2 cut(s) 438, 576
Hsp92II CATG 1 cut(s) 742
HspAI GCGC 5 cut(s) 369, 389, 691, 693, 734
Kzo9I GATC 2 cut(s) 60, 81
LmnI GCTCC 2 cut(s) 242, 359
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 2 cut(s) 121, 282
MaeI CTAG 1 cut(s) 787
MaeII ACGT 3 cut(s) 462, 539, 713
MaeIII GTNAC 2 cut(s) 419, 564
MalI GATC 2 cut(s) 62, 83
MbiI CCGCTC 1 cut(s) 594
MboI GATC 2 cut(s) 60, 81
MboII GAAGA 3 cut(s) 205, 676, 769
MhlI GDGCHC 4 cut(s) 283, 506, 752, 768
MmeI TCCRAC 1 cut(s) 611
MspI CCGG 5 cut(s) 183, 267, 327, 363, 661
MspR9I CCNGG 3 cut(s) 262, 602, 662
MvaI CCWGG 2 cut(s) 262, 602
MvnI CGCG 5 cut(s) 204, 389, 693, 695, 762
MwoI GCNNNNNNNGC 5 cut(s) 318, 327, 336, 368, 763
NciI CCSGG 1 cut(s) 662
NdeII GATC 2 cut(s) 60, 81
NlaIII CATG 1 cut(s) 742
NlaIV GGNNCC 6 cut(s) 281, 306, 361, 415, 599, 635
NmuCI GTSAC 2 cut(s) 419, 564
PaeR7I CTCGAG 1 cut(s) 347
PauI GCGCGC 1 cut(s) 691
PkrI GCNGC 7 cut(s) 206, 209, 272, 338, 341, 373, 413
PmaCI CACGTG 1 cut(s) 540
PmlI CACGTG 1 cut(s) 540
Ppu21I YACGTR 1 cut(s) 540
PpuMI RGGWCCY 1 cut(s) 305
PshAI GACNNNNGTC 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 260, 600
PspCI CACGTG 1 cut(s) 540
PspGI CCWGG 2 cut(s) 260, 600
PspN4I GGNNCC 6 cut(s) 281, 306, 361, 415, 599, 635
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 7 cut(s) 162, 264, 279, 280, 305, 413, 490
PspPPI RGGWCCY 1 cut(s) 305
PteI GCGCGC 1 cut(s) 691
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SacI GAGCTC 1 cut(s) 768
SatI GCNGC 7 cut(s) 205, 208, 271, 337, 340, 372, 412
Sau3AI GATC 2 cut(s) 60, 81
Sau96I GGNCC 7 cut(s) 162, 264, 279, 280, 305, 413, 490
ScrFI CCNGG 3 cut(s) 262, 602, 662
SduI GDGCHC 4 cut(s) 283, 506, 752, 768
SfaNI GCATC 2 cut(s) 121, 282
Sfr274I CTCGAG 1 cut(s) 347
SgrAI CRCCGGYG 1 cut(s) 326
SinI GGWCC 2 cut(s) 264, 305
SlaI CTCGAG 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 347, 767
SmoI CTYRAG 2 cut(s) 347, 767
SspMI CTAG 1 cut(s) 787
SstI GAGCTC 1 cut(s) 768
StyD4I CCNGG 3 cut(s) 260, 600, 660
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 2 cut(s) 94, 133
TaiI ACGT 3 cut(s) 465, 542, 716
TaqI TCGA 3 cut(s) 348, 450, 668
TaqII GACCGA 1 cut(s) 564
TauI GCSGC 6 cut(s) 207, 210, 273, 339, 342, 414
TscAI CASTG 2 cut(s) 506, 752
TseFI GTSAC 2 cut(s) 419, 564
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 2 cut(s) 419, 564
TspGWI ACGGA 2 cut(s) 372, 629
TspRI CASTG 2 cut(s) 506, 752
VpaK11BI GGWCC 2 cut(s) 264, 305
XhoI CTCGAG 1 cut(s) 347
XspI CTAG 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.