Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006031

Physical Location & Seq

Genomic Coordinates Forward (+)

12638284 .. 12640820

Gene Structure 2537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29525.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCCGGTTTACGTTGATCGCGAAGCTCCTAAGCTATGGAGACGAATTTACTCAGAAGCGACATTAGAAGCTTCTCTTCTTGCTGAAAAATGGAAGCTTGTTCTTGCTGGACTTGTATTTCAGTACATTCATGGACTTGCTGCTCATGGAGTTCACTACTTACACCGACCTGGTCCTACTCTTCAAGATGCTGGTTTCTTTATTCTTCCAGCACTTGGGCAAGATAAAGCATTTTTCAGTGAAACTGTGTTTGTCACTATCTTTGGATCATTTATCTTGTGGACATTTCATCCTTTTGTTTCCCACAGTAAAAAGATTTGTACAGTTTTGATATGGTGCAGAGTTTTTGTTTATTTAGCTGCTTCTCAAAGTCTGAGGATCATAACATTCTTTGCAACACAGCTTCCTGGGCCGAATTATCATTGTCGAGAAGGCTCCAAGCTCGCCAAGATTCCACCTCCAAAGAATGTTCTTGAAGTACTCTTGATTAACTTTCCTGATGGAGTTATATATGGTTGTGGAGATCTGATATTTTCATCACATACGATATTCACCTTAGTCTTTGTACGCACATATCAAAGATACGGCACACGAAGGTGGATCAAGCACTTGGCTTGGCTTATGGCAGTAATACAGAGCATATTGATTATAGCATCAAGGAAACATTACACAGTTGACATTGTTGTTGCATGGTATACTGTGAACCTTGTAATGTTCTACGTTGACAGTAAACTGCCAGAAATGGCAGAACGTTCTAGTGGACCTTCTCCTACGCCTTTACTTCCACTGAGCACAAAGGACAGTAAGAACAAGAGCAAAGAAGATCATCAGAGACTTCTAAACGAGAACAATGTAGCAGATGATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

289

Amino Acids

32.98

Weight (kDa)

9.27

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2_C	PF14360	172 - 240	4.8e-24	PAP2 superfamily C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29525 AT2G29525 AT2G29525 AT2G29525 AT2G29525
fragaria_vesca	FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390
malus_domestica	MD03G1081100.v1.1
prunus_persica	Prupe.6G065700_v2.0.a1
pyrus_communis	pycom03g06470
rosa_chinensis	RchiOBHm_Chr5g0067241
rosa_laevigata	RLG00000035918
rosa_multiflora	Rmu_sc0000015.1_g000016
rosa_roxburghii	Rroxscaffold_1G00013890
rosa_rugosa	Rorug05G0383100 Rorug05G0383100 Rorug05G0383200
rosa_samantha	Rh5AG442600 Rh5BG459700 Rh5CG482100 Rh5DG474600
rosa_wichuraiana	Rw5G041360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	695
AccII	CGCG	1 cut(s)	21
AclI	AACGTT	1 cut(s)	751
AclWI	GGATC	3 cut(s)	274, 386, 608
AcsI	RAATTY	1 cut(s)	45
AfaI	GTAC	4 cut(s)	125, 322, 480, 567
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	185, 476
AjnI	CCWGG	2 cut(s)	169, 406
AleI	CACNNNNGTG	1 cut(s)	595
AluBI	AGCT	7 cut(s)	26, 34, 71, 97, 359, 403, 442
AluI	AGCT	7 cut(s)	26, 34, 71, 97, 359, 403, 442
Alw21I	GWGCWC	1 cut(s)	794
Alw26I	GTCTC	2 cut(s)	34, 826
AlwI	GGATC	3 cut(s)	274, 386, 608
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	140, 359
ApoI	RAATTY	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	173, 410, 761
AsuHPI	GGTGA	1 cut(s)	544
AvaII	GGWCC	2 cut(s)	173, 761
Bbv12I	GWGCWC	1 cut(s)	794
BbvI	GCAGC	2 cut(s)	127, 346
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	1 cut(s)	601
BciT130I	CCWGG	2 cut(s)	171, 408
BclI	TGATCA	1 cut(s)	862
BcoDI	GTCTC	2 cut(s)	34, 826
BfaI	CTAG	1 cut(s)	756
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	2 cut(s)	141, 360
BlsI	GCNGC	2 cut(s)	142, 361
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	2 cut(s)	171, 408
Bme18I	GGWCC	2 cut(s)	173, 761
BmgT120I	GGNCC	3 cut(s)	173, 410, 761
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	2 cut(s)	171, 408
BmsI	GCATC	2 cut(s)	178, 662
Bpu10I	CCTNAGC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	4
BseBI	CCWGG	2 cut(s)	171, 408
BseDI	CCNNGG	1 cut(s)	407
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	3 cut(s)	66, 365, 779
BseXI	GCAGC	2 cut(s)	127, 346
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	34, 826
BsmBI	CGTCTC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	794
Bsp1407I	TGTACA	1 cut(s)	320
Bsp143I	GATC	7 cut(s)	16, 266, 378, 523, 600, 823, 862
Bsp68I	TCGCGA	1 cut(s)	21
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	3 cut(s)	65, 366, 780
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	436
BspPI	GGATC	3 cut(s)	274, 386, 608
BsrFI	RCCGGY	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	7 cut(s)	16, 266, 378, 523, 600, 823, 862
BssNAI	GTATAC	1 cut(s)	696
Bst1107I	GTATAC	1 cut(s)	696
Bst2UI	CCWGG	2 cut(s)	171, 408
Bst4CI	ACNGT	7 cut(s)	247, 308, 325, 673, 700, 728, 803
Bst6I	CTCTTC	2 cut(s)	81, 186
BstAUI	TGTACA	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	5 cut(s)	30, 52, 374, 556, 788
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	7 cut(s)	19, 269, 381, 526, 603, 826, 865
BstMAI	GTCTC	2 cut(s)	34, 826
BstMBI	GATC	7 cut(s)	16, 266, 378, 523, 600, 823, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstNI	CCWGG	2 cut(s)	171, 408
BstSCI	CCNGG	2 cut(s)	169, 406
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	127, 346
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BstZ17I	GTATAC	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	244, 785
BtuMI	TCGCGA	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	3 cut(s)	173, 410, 761
CsiI	ACCWGGT	1 cut(s)	169
Csp6I	GTAC	4 cut(s)	124, 321, 479, 566
CviAII	CATG	3 cut(s)	131, 146, 690
CviQI	GTAC	4 cut(s)	124, 321, 479, 566
DdeI	CTNAG	5 cut(s)	30, 52, 374, 556, 788
DpnI	GATC	7 cut(s)	18, 268, 380, 525, 602, 825, 864
DpnII	GATC	7 cut(s)	16, 266, 378, 523, 600, 823, 862
Eam1104I	CTCTTC	2 cut(s)	81, 186
EarI	CTCTTC	2 cut(s)	81, 186
Eco47I	GGWCC	2 cut(s)	173, 761
EcoRII	CCWGG	2 cut(s)	169, 406
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	3 cut(s)	134, 149, 693
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	3 cut(s)	130, 145, 689
FbaI	TGATCA	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	2 cut(s)	141, 360
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	141, 360
FspBI	CTAG	1 cut(s)	756
GluI	GCNGC	2 cut(s)	141, 360
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	3 cut(s)	134, 149, 693
HincII	GTYRAC	2 cut(s)	676, 724
HindII	GTYRAC	2 cut(s)	676, 724
HindIII	AAGCTT	2 cut(s)	69, 95
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	9 cut(s)	10, 154, 282, 676, 696, 703, 724, 731, 761
Hpy188I	TCNGA	4 cut(s)	55, 375, 528, 831
Hpy188III	TCNNGA	6 cut(s)	20, 185, 428, 473, 484, 497
Hpy8I	GTNNAC	9 cut(s)	10, 154, 282, 676, 696, 703, 724, 731, 761
HpyAV	CCTTC	3 cut(s)	425, 588, 774
HpyCH4III	ACNGT	7 cut(s)	247, 308, 325, 673, 700, 728, 803
HpyCH4IV	ACGT	3 cut(s)	12, 720, 751
HpyCH4V	TGCA	3 cut(s)	339, 395, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	5 cut(s)	30, 52, 374, 556, 788
HpySE526I	ACGT	3 cut(s)	12, 720, 751
Hsp92II	CATG	3 cut(s)	134, 149, 693
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	7 cut(s)	16, 266, 378, 523, 600, 823, 862
LmnI	GCTCC	2 cut(s)	31, 440
Lsp1109I	GCAGC	2 cut(s)	127, 346
LweI	GCATC	2 cut(s)	178, 662
MabI	ACCWGGT	1 cut(s)	169
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	3 cut(s)	12, 720, 751
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	7 cut(s)	18, 268, 380, 525, 602, 825, 864
MboI	GATC	7 cut(s)	16, 266, 378, 523, 600, 823, 862
MboII	GAAGA	4 cut(s)	68, 173, 197, 833
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	794
MluCI	AATT	2 cut(s)	45, 415
MnlI	CCTC	2 cut(s)	369, 468
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	595
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	171, 408
MvaI	CCWGG	2 cut(s)	171, 408
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	409
NdeII	GATC	7 cut(s)	16, 266, 378, 523, 600, 823, 862
NlaIII	CATG	3 cut(s)	134, 149, 693
NlaIV	GGNNCC	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	253
NruI	TCGCGA	1 cut(s)	21
OliI	CACNNNNGTG	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	451
PflFI	GACNNNGTC	1 cut(s)	171
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	142, 361
Psp1406I	AACGTT	1 cut(s)	751
Psp6I	CCWGG	2 cut(s)	169, 406
PspGI	CCWGG	2 cut(s)	169, 406
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	3 cut(s)	173, 410, 761
PsuI	RGATCY	1 cut(s)	523
PsyI	GACNNNGTC	1 cut(s)	171
RruI	TCGCGA	1 cut(s)	21
RsaI	GTAC	4 cut(s)	125, 322, 480, 567
RsaNI	GTAC	4 cut(s)	124, 321, 479, 566
RseI	CAYNNNNRTG	1 cut(s)	595
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	2 cut(s)	141, 360
Sau3AI	GATC	7 cut(s)	16, 266, 378, 523, 600, 823, 862
Sau96I	GGNCC	3 cut(s)	173, 410, 761
ScaI	AGTACT	1 cut(s)	480
ScrFI	CCNGG	2 cut(s)	171, 408
SduI	GDGCHC	1 cut(s)	794
SexAI	ACCWGGT	1 cut(s)	169
SfaNI	GCATC	2 cut(s)	178, 662
SinI	GGWCC	2 cut(s)	173, 761
SmiMI	CAYNNNNRTG	1 cut(s)	595
Sse9I	AATT	2 cut(s)	45, 415
SspMI	CTAG	1 cut(s)	756
StyD4I	CCNGG	2 cut(s)	169, 406
TaaI	ACNGT	7 cut(s)	247, 308, 325, 673, 700, 728, 803
TaiI	ACGT	3 cut(s)	15, 723, 754
TaqI	TCGA	1 cut(s)	427
TasI	AATT	2 cut(s)	45, 415
TatI	WGTACW	3 cut(s)	123, 320, 478
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	2 cut(s)	244, 792
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	2 cut(s)	140, 359
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	119, 278, 525
TspRI	CASTG	2 cut(s)	244, 792
Tth111I	GACNNNGTC	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	173, 761
XapI	RAATTY	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	695
XspI	CTAG	1 cut(s)	756
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.