Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006031

Physical Location & Seq

Genomic Coordinates Forward (+)

73426916 .. 73431243

Gene Structure 4328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCCGTTTTACTTTGCTCGTGAGGCTCCTAAGTTGTGGAGGAAAATATGCAATGAGTCGTCAACTGAAGCTTCGCTTCTTGCTGGGAATTGGAAGTTTGTTCTTGCTGGCCTCATTTGTCAGTATCTTCATGGACTAGCTGTGCACGGAGTTCATTATCTACATCGGCCAGGACCAATACTTCAGGATGCTGGCTTCTTTTTACTCCCGGAACTTGGACAAGACAAAACTTATCTGAGTGAGACTCTGTTTGCTGTTGTATTTTTTTCTTTTATCTTGTGGACATTTCACCCATTTGTTTTTCAGAGCAAAAAAATCTATACAGTTCTGATATGGTGCAGGGTGCTTGCTTATTTAGCTGTGTCTCAGTTTCTCCGGATCATCACCTTCTACGCCACTCAGCTTCCTGGTCCAAACTATCATTGCCGCGAGGGCTCAGAACTTGCCAGGCTGCCCCCTCCAAAGAGTGCACTTGAAGTGCTCTTAATCAACTTTCCCCAAGGTGTTATGTATGGCTGTGGTGATTTGATTTTTTCATCGCACATGATTTTCACTTTAGTATTTGTGCGCACATTTCAGAAATACGGAACAAGGAGGTGCATCAAGCAGTTTGCTTGGTTAGTTTCTGTGATTCTAAGTGTCTTGATTATAGCATCTCGTAAACATTACACCGTTGATGTTGTTGTTGCCTGGTACACTGTAAATTTGGTAGTTTCCTTTGTCGACCAAAAATTGCCAGAATTGCCTGATCGGTCCTTGGGTTCTACATCTCCACCGTTACTACCAACGAGTACCAAGGATAGGGATAGCAAAAACAGAGAAGAGCTTGAAAAATTCCGGAATGGAAATTCTTCTGACATCAGCACACGGCACAAGCTGAAGATGGCTTTGCTGCTGTTAGTCTTAGCCCTACCAATGTCAAAAGTATCCAACAGAAAAATTATGGCATATATGCATGGACCTCCATTCTGGGATTTTATTTTGGTGAAATGCAAAAGGCTGCCTCCAGTTCTGAACAACCAGGATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

344

Amino Acids

39.29

Weight (kDa)

9.54

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2_C	PF14360	172 - 241	7.2e-23	PAP2 superfamily C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29525 AT2G29525 AT2G29525 AT2G29525 AT2G29525
fragaria_vesca	FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390
malus_domestica	MD03G1081100.v1.1
prunus_persica	Prupe.6G065700_v2.0.a1
pyrus_communis	pycom03g06470
rosa_chinensis	RchiOBHm_Chr5g0067241
rosa_laevigata	RLG00000035918
rosa_multiflora	Rmu_sc0000015.1_g000016
rosa_roxburghii	Rroxscaffold_1G00013890
rosa_rugosa	Rorug05G0383100 Rorug05G0383100 Rorug05G0383200
rosa_samantha	Rh5AG442600 Rh5BG459700 Rh5CG482100 Rh5DG474600
rosa_wichuraiana	Rw5G041360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	723
AccII	CGCG	1 cut(s)	429
AccIII	TCCGGA	2 cut(s)	375, 837
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	3 cut(s)	703, 833, 847
AcuI	CTGAAG	3 cut(s)	87, 167, 899
AfaI	GTAC	2 cut(s)	695, 793
AfiI	CCNNNNNNNGG	2 cut(s)	215, 801
AgsI	TTSAA	2 cut(s)	476, 830
AjnI	CCWGG	5 cut(s)	169, 406, 446, 689, 1020
AluBI	AGCT	6 cut(s)	71, 140, 359, 403, 826, 877
AluI	AGCT	6 cut(s)	71, 140, 359, 403, 826, 877
Alw21I	GWGCWC	3 cut(s)	147, 472, 483
Alw26I	GTCTC	2 cut(s)	236, 369
Alw44I	GTGCAC	2 cut(s)	143, 468
AlwI	GGATC	1 cut(s)	386
Aor13HI	TCCGGA	2 cut(s)	375, 837
AoxI	GGCC	2 cut(s)	109, 167
ApaLI	GTGCAC	2 cut(s)	143, 468
ApeKI	GCWGC	3 cut(s)	451, 892, 1000
ApoI	RAATTY	3 cut(s)	703, 833, 847
Asp700I	GAANNNNTTC	1 cut(s)	850
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	4 cut(s)	173, 410, 753, 959
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	4 cut(s)	281, 376, 533, 997
AvaII	GGWCC	4 cut(s)	173, 410, 753, 959
BaeGI	GKGCMC	2 cut(s)	147, 472
BanII	GRGCYC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	3 cut(s)	147, 472, 483
BbvI	GCAGC	3 cut(s)	438, 879, 987
BccI	CCATC	1 cut(s)	877
BceAI	ACGGC	1 cut(s)	884
BciT130I	CCWGG	5 cut(s)	171, 408, 448, 691, 1022
BciVI	GTATCC	1 cut(s)	937
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	236, 369
BfaI	CTAG	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	937
BglI	GCCNNNNNGGC	1 cut(s)	432
BisI	GCNGC	4 cut(s)	427, 452, 893, 1001
BlsI	GCNGC	4 cut(s)	428, 453, 894, 1002
Bme1390I	CCNGG	6 cut(s)	171, 209, 408, 448, 691, 1022
Bme18I	GGWCC	4 cut(s)	173, 410, 753, 959
BmgT120I	GGNCC	4 cut(s)	173, 410, 753, 959
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	6 cut(s)	171, 209, 408, 448, 691, 1022
BmsI	GCATC	3 cut(s)	178, 609, 662
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpmI	CTGGAG	1 cut(s)	990
BpuMI	CCSGG	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	499, 756, 795
BsaWI	WCCGGW	2 cut(s)	375, 837
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 801
Bse1I	ACTGG	1 cut(s)	1007
Bse3DI	GCAATG	2 cut(s)	58, 421
BseAI	TCCGGA	2 cut(s)	375, 837
BseBI	CCWGG	5 cut(s)	171, 408, 448, 691, 1022
BseDI	CCNNGG	3 cut(s)	499, 756, 795
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	215, 801
BseMI	GCAATG	2 cut(s)	58, 421
BseMII	CTCAG	4 cut(s)	227, 380, 413, 450
BseNI	ACTGG	1 cut(s)	1007
BseSI	GKGCMC	2 cut(s)	147, 472
BseXI	GCAGC	3 cut(s)	438, 879, 987
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	2 cut(s)	111, 169
BsiHKAI	GWGCWC	3 cut(s)	147, 472, 483
BsiSI	CCGG	3 cut(s)	209, 376, 838
BslI	CCNNNNNNNGG	2 cut(s)	215, 801
BsmAI	GTCTC	2 cut(s)	236, 369
BsnI	GGCC	2 cut(s)	111, 169
Bsp1286I	GDGCHC	4 cut(s)	147, 437, 472, 483
Bsp13I	TCCGGA	2 cut(s)	375, 837
Bsp143I	GATC	3 cut(s)	378, 748, 1024
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	2 cut(s)	111, 169
BspCNI	CTCAG	4 cut(s)	228, 379, 412, 449
BspEI	TCCGGA	2 cut(s)	375, 837
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	816
BsrDI	GCAATG	2 cut(s)	58, 421
BsrI	ACTGG	1 cut(s)	1007
BssECI	CCNNGG	3 cut(s)	499, 756, 795
BssMI	GATC	3 cut(s)	378, 748, 1024
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	3 cut(s)	499, 756, 795
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	5 cut(s)	171, 408, 448, 691, 1022
Bst4CI	ACNGT	4 cut(s)	325, 673, 700, 777
Bst6I	CTCTTC	1 cut(s)	816
BstC8I	GCNNGC	3 cut(s)	109, 193, 348
BstDEI	CTNAG	7 cut(s)	30, 236, 366, 399, 436, 635, 904
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	3 cut(s)	381, 751, 1027
BstMAI	GTCTC	2 cut(s)	236, 369
BstMBI	GATC	3 cut(s)	378, 748, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 356, 432, 742
BstNI	CCWGG	5 cut(s)	171, 408, 448, 691, 1022
BstSCI	CCNGG	6 cut(s)	169, 207, 406, 446, 689, 1020
BstSLI	GKGCMC	2 cut(s)	147, 472
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	438, 879, 987
BsuI	GTATCC	1 cut(s)	937
BsuRI	GGCC	2 cut(s)	111, 169
BtgZI	GCGATG	1 cut(s)	522
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	3 cut(s)	109, 193, 348
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	4 cut(s)	173, 410, 753, 959
Csp6I	GTAC	2 cut(s)	694, 792
CviAII	CATG	3 cut(s)	131, 544, 956
CviQI	GTAC	2 cut(s)	694, 792
DdeI	CTNAG	7 cut(s)	30, 236, 366, 399, 436, 635, 904
DpnI	GATC	3 cut(s)	380, 750, 1026
DpnII	GATC	3 cut(s)	378, 748, 1024
EaeI	YGGCCR	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco130I	CCWWGG	3 cut(s)	499, 756, 795
Eco24I	GRGCYC	1 cut(s)	437
Eco47I	GGWCC	4 cut(s)	173, 410, 753, 959
Eco57I	CTGAAG	3 cut(s)	87, 167, 899
EcoRII	CCWGG	5 cut(s)	169, 406, 446, 689, 1020
EcoT14I	CCWWGG	3 cut(s)	499, 756, 795
EcoT22I	ATGCAT	1 cut(s)	957
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	3 cut(s)	499, 756, 795
FaeI	CATG	3 cut(s)	134, 547, 959
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	3 cut(s)	130, 543, 955
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	4 cut(s)	427, 452, 893, 1001
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	4 cut(s)	427, 452, 893, 1001
FspAI	RTGCGCAY	1 cut(s)	569
FspBI	CTAG	1 cut(s)	137
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	4 cut(s)	427, 452, 893, 1001
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	990
HaeIII	GGCC	2 cut(s)	111, 169
HapII	CCGG	3 cut(s)	209, 376, 838
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	3 cut(s)	134, 547, 959
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HincII	GTYRAC	2 cut(s)	63, 724
HindII	GTYRAC	2 cut(s)	63, 724
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	3 cut(s)	56, 244, 631
HpaII	CCGG	3 cut(s)	209, 376, 838
HphI	GGTGA	4 cut(s)	281, 376, 533, 997
Hpy166II	GTNNAC	7 cut(s)	63, 145, 282, 470, 662, 696, 724
Hpy188I	TCNGA	7 cut(s)	237, 306, 330, 439, 579, 856, 1014
Hpy188III	TCNNGA	5 cut(s)	20, 185, 376, 643, 838
Hpy8I	GTNNAC	7 cut(s)	63, 145, 282, 470, 662, 696, 724
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	4 cut(s)	325, 673, 700, 777
HpyCH4V	TGCA	7 cut(s)	51, 145, 339, 470, 600, 955, 993
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 356, 432, 742
HpyF3I	CTNAG	7 cut(s)	30, 236, 366, 399, 436, 635, 904
Hsp92II	CATG	3 cut(s)	134, 547, 959
HspAI	GCGC	1 cut(s)	568
Kpn2I	TCCGGA	2 cut(s)	375, 837
Kzo9I	GATC	3 cut(s)	378, 748, 1024
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	3 cut(s)	438, 879, 987
LweI	GCATC	3 cut(s)	178, 609, 662
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	777
MalI	GATC	3 cut(s)	380, 750, 1026
MboI	GATC	3 cut(s)	378, 748, 1024
MboII	GAAGA	4 cut(s)	119, 833, 843, 892
MhlI	GDGCHC	4 cut(s)	147, 437, 472, 483
MluCI	AATT	7 cut(s)	88, 703, 731, 740, 833, 847, 939
MlyI	GAGTC	2 cut(s)	65, 238
MmeI	TCCRAC	1 cut(s)	954
MnlI	CCTC	8 cut(s)	16, 33, 122, 424, 468, 588, 972, 1014
Mph1103I	ATGCAT	1 cut(s)	957
MroI	TCCGGA	2 cut(s)	375, 837
MroXI	GAANNNNTTC	1 cut(s)	850
MseI	TTAA	1 cut(s)	485
MspI	CCGG	3 cut(s)	209, 376, 838
MspR9I	CCNGG	6 cut(s)	171, 209, 408, 448, 691, 1022
MvaI	CCWGG	5 cut(s)	171, 408, 448, 691, 1022
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	23, 356, 432, 742
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	3 cut(s)	378, 748, 1024
NlaIII	CATG	3 cut(s)	134, 547, 959
NlaIV	GGNNCC	1 cut(s)	27
NsbI	TGCGCA	1 cut(s)	569
NsiI	ATGCAT	1 cut(s)	957
PciSI	GCTCTTC	1 cut(s)	816
PdmI	GAANNNNTTC	1 cut(s)	850
PfeI	GAWTC	1 cut(s)	631
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	428, 453, 894, 1002
PleI	GAGTC	2 cut(s)	64, 238
PpsI	GAGTC	2 cut(s)	64, 238
Psp6I	CCWGG	5 cut(s)	169, 406, 446, 689, 1020
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	5 cut(s)	169, 406, 446, 689, 1020
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	4 cut(s)	173, 410, 753, 959
RsaI	GTAC	2 cut(s)	695, 793
RsaNI	GTAC	2 cut(s)	694, 792
SalI	GTCGAC	1 cut(s)	722
SapI	GCTCTTC	1 cut(s)	816
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	4 cut(s)	427, 452, 893, 1001
Sau3AI	GATC	3 cut(s)	378, 748, 1024
Sau96I	GGNCC	4 cut(s)	173, 410, 753, 959
SchI	GAGTC	2 cut(s)	65, 238
ScrFI	CCNGG	6 cut(s)	171, 209, 408, 448, 691, 1022
SduI	GDGCHC	4 cut(s)	147, 437, 472, 483
SfaNI	GCATC	3 cut(s)	178, 609, 662
SinI	GGWCC	4 cut(s)	173, 410, 753, 959
Sse9I	AATT	7 cut(s)	88, 703, 731, 740, 833, 847, 939
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	6 cut(s)	169, 207, 406, 446, 689, 1020
StyI	CCWWGG	3 cut(s)	499, 756, 795
TaaI	ACNGT	4 cut(s)	325, 673, 700, 777
TaqI	TCGA	1 cut(s)	723
TaqII	GACCGA	1 cut(s)	741
TasI	AATT	7 cut(s)	88, 703, 731, 740, 833, 847, 939
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	1 cut(s)	703
TseI	GCWGC	3 cut(s)	451, 892, 1000
TspDTI	ATGAA	3 cut(s)	119, 143, 525
TspGWI	ACGGA	2 cut(s)	162, 600
TspRI	CASTG	1 cut(s)	703
VneI	GTGCAC	2 cut(s)	143, 468
VpaK11BI	GGWCC	4 cut(s)	173, 410, 753, 959
XapI	RAATTY	3 cut(s)	703, 833, 847
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	850
XspI	CTAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.