Rw5G041360

phosphatidylinositol ceramide inositolphosphotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006031
Physical Location & Seq
Forward (+)
72894453 .. 72897733
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G041360.1

Sequence Viewer

Length: 780 bp
ATGCCGTTTTACTTTGCTCGTGAGGCTCCTAAGTTGTGGAGGAAAATATGCAATGAGTCGTCAACTGAAGCTTCGCTTCTTGCTGGGAATTGGAAGTTTGTTCTTGCTGGTCTCATTTGTCAGTATCTTCATGGACTGGCTGTGCACGGAGTTCATTATCTACATCGGCCAGGACCAATACTTCAGGATGCTGGCTTCTTTTTACTCCCGGAACTTGGACAAGACAAAACTTATCTGAGTGAGACTCTGTTTGCTGTTGTATTTTTTTCTTTTATCTTGTGGACATTTCACCCGTTTGTTTTTCAGAGCAAAAAAATCTATACAGTTCTGATATGGTGCAGGGTACTTGCTTATTTAGCTGTGTCTCAGCTTCTCCGGATCATCACCTTCTACGCCACTCAGCTTCCTGGTCCAAACTATCATTGCCGCGAGGGCTCAGAACTTGCCAGGCTGCCCCCTCCAAAGAGTGCACTTGCAGTGCTCTTAATCAACTTTCCCCGAGGTGTTATGTATGGCTGTGGTGATTTGATTTTTTCATCACACATGATTTTCACTTTAGTATTTGTGCGCACATTTCAGAAATATGGAACAAGGAGGTGCATCAAGCAGTTTGCTTGGTTAGTTTCTGTGATTCTAAGTGTCTTGATTATAGCATCCGTAAGCATTACACCGTTGATGTACACTGTAAATTTGGTAGTTTCCTTTGTCGACCAAAAATTGCCAGAAGAGCTTGAAAAATTCCGGAATGGAAATTCTTCTGACATCAGCACACGGGTCTGA

Protein Analysis

259

Amino Acids

29.53

Weight (kDa)

9.33

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2_C PF14360 172 - 234 1.2e-11 PAP2 superfamily C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 569
AccI GTMKAC 1 cut(s) 708
AccII CGCG 1 cut(s) 429
AccIII TCCGGA 2 cut(s) 375, 741
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 386
AcoI YGGCCR 1 cut(s) 167
AcsI RAATTY 3 cut(s) 688, 737, 751
AcuI CTGAAG 2 cut(s) 87, 167
AfaI GTAC 2 cut(s) 345, 680
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 734
AjnI CCWGG 3 cut(s) 169, 406, 446
AluBI AGCT 5 cut(s) 71, 359, 370, 403, 730
AluI AGCT 5 cut(s) 71, 359, 370, 403, 730
Alw21I GWGCWC 3 cut(s) 147, 472, 483
Alw26I GTCTC 3 cut(s) 116, 236, 369
Alw44I GTGCAC 2 cut(s) 143, 468
AlwI GGATC 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 498
Aor13HI TCCGGA 2 cut(s) 375, 741
AoxI GGCC 1 cut(s) 167
ApaLI GTGCAC 2 cut(s) 143, 468
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 3 cut(s) 688, 737, 751
Asp700I GAANNNNTTC 1 cut(s) 754
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 2 cut(s) 173, 410
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 281, 376, 533
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 2 cut(s) 173, 410
BaeGI GKGCMC 2 cut(s) 147, 472
BanII GRGCYC 1 cut(s) 437
BauI CACGAG 1 cut(s) 18
Bbv12I GWGCWC 3 cut(s) 147, 472, 483
BbvI GCAGC 1 cut(s) 438
BciT130I CCWGG 3 cut(s) 171, 408, 448
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 3 cut(s) 116, 236, 369
BglI GCCNNNNNGGC 1 cut(s) 432
BisI GCNGC 2 cut(s) 427, 452
BlsI GCNGC 2 cut(s) 428, 453
Bme1390I CCNGG 4 cut(s) 171, 209, 408, 448
Bme18I GGWCC 2 cut(s) 173, 410
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 173, 410
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 4 cut(s) 171, 209, 408, 448
BmsI GCATC 3 cut(s) 178, 609, 662
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpuMI CCSGG 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 499
BsaWI WCCGGW 2 cut(s) 375, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 2 cut(s) 58, 421
BseAI TCCGGA 2 cut(s) 375, 741
BseBI CCWGG 3 cut(s) 171, 408, 448
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 2 cut(s) 193, 653
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMI GCAATG 2 cut(s) 58, 421
BseMII CTCAG 4 cut(s) 227, 380, 413, 450
BseNI ACTGG 1 cut(s) 141
BseSI GKGCMC 2 cut(s) 147, 472
BseXI GCAGC 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 1 cut(s) 169
BsiHKAI GWGCWC 3 cut(s) 147, 472, 483
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 3 cut(s) 209, 376, 742
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 3 cut(s) 116, 236, 369
BsnI GGCC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 4 cut(s) 147, 437, 472, 483
Bsp13I TCCGGA 2 cut(s) 375, 741
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 1 cut(s) 378
BspACI CCGC 1 cut(s) 427
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 4 cut(s) 228, 379, 412, 449
BspEI TCCGGA 2 cut(s) 375, 741
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 1 cut(s) 386
BspQI GCTCTTC 1 cut(s) 720
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 2 cut(s) 58, 421
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 1 cut(s) 378
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 3 cut(s) 171, 408, 448
Bst4CI ACNGT 3 cut(s) 325, 672, 685
Bst6I CTCTTC 1 cut(s) 720
BstAUI TGTACA 1 cut(s) 678
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 6 cut(s) 30, 236, 366, 399, 436, 635
BstF5I GGATG 2 cut(s) 193, 653
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 1 cut(s) 381
BstMAI GTCTC 3 cut(s) 116, 236, 369
BstMBI GATC 1 cut(s) 378
BstMWI GCNNNNNNNGC 4 cut(s) 23, 356, 432, 727
BstNI CCWGG 3 cut(s) 171, 408, 448
BstSCI CCNGG 4 cut(s) 169, 207, 406, 446
BstSLI GKGCMC 2 cut(s) 147, 472
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 438
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 193, 653
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 483, 681
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 1 cut(s) 570
Cfr13I GGNCC 2 cut(s) 173, 410
Csp6I GTAC 2 cut(s) 344, 679
CviAII CATG 2 cut(s) 131, 544
CviQI GTAC 2 cut(s) 344, 679
DdeI CTNAG 6 cut(s) 30, 236, 366, 399, 436, 635
DpnI GATC 1 cut(s) 380
DpnII GATC 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
Eco24I GRGCYC 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 2 cut(s) 173, 410
Eco57I CTGAAG 2 cut(s) 87, 167
Eco88I CYCGRG 1 cut(s) 498
EcoRII CCWGG 3 cut(s) 169, 406, 446
EcoT38I GRGCYC 1 cut(s) 437
FaeI CATG 2 cut(s) 134, 547
FaiI YATR 9 cut(s) 49, 132, 321, 334, 509, 513, 545, 585, 650
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 2 cut(s) 130, 543
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 2 cut(s) 427, 452
FokI GGATG 2 cut(s) 200, 640
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 2 cut(s) 427, 452
FspAI RTGCGCAY 1 cut(s) 569
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 1 cut(s) 569
GluI GCNGC 2 cut(s) 427, 452
GsaI CCCAGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 169
HapII CCGG 3 cut(s) 209, 376, 742
HhaI GCGC 1 cut(s) 570
Hin1II CATG 2 cut(s) 134, 547
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HincII GTYRAC 2 cut(s) 63, 709
HindII GTYRAC 2 cut(s) 63, 709
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 3 cut(s) 56, 244, 631
HpaII CCGG 3 cut(s) 209, 376, 742
HphI GGTGA 3 cut(s) 281, 376, 533
Hpy166II GTNNAC 6 cut(s) 63, 145, 282, 470, 681, 709
Hpy188I TCNGA 7 cut(s) 237, 306, 330, 439, 579, 760, 779
Hpy188III TCNNGA 5 cut(s) 20, 185, 376, 643, 742
Hpy8I GTNNAC 6 cut(s) 63, 145, 282, 470, 681, 709
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 3 cut(s) 325, 672, 685
HpyCH4V TGCA 6 cut(s) 51, 145, 339, 470, 476, 600
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 356, 432, 727
HpyF3I CTNAG 6 cut(s) 30, 236, 366, 399, 436, 635
Hsp92II CATG 2 cut(s) 134, 547
HspAI GCGC 1 cut(s) 568
Kpn2I TCCGGA 2 cut(s) 375, 741
Kzo9I GATC 1 cut(s) 378
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 438
LweI GCATC 3 cut(s) 178, 609, 662
MalI GATC 1 cut(s) 380
MboI GATC 1 cut(s) 378
MboII GAAGA 3 cut(s) 119, 737, 747
MhlI GDGCHC 4 cut(s) 147, 437, 472, 483
MluCI AATT 5 cut(s) 88, 688, 716, 737, 751
MlyI GAGTC 2 cut(s) 65, 238
MnlI CCTC 6 cut(s) 16, 33, 424, 468, 494, 588
MroI TCCGGA 2 cut(s) 375, 741
MroXI GAANNNNTTC 1 cut(s) 754
MseI TTAA 1 cut(s) 485
MspI CCGG 3 cut(s) 209, 376, 742
MspR9I CCNGG 4 cut(s) 171, 209, 408, 448
MvaI CCWGG 3 cut(s) 171, 408, 448
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 4 cut(s) 23, 356, 432, 727
NciI CCSGG 1 cut(s) 209
NdeII GATC 1 cut(s) 378
NlaIII CATG 2 cut(s) 134, 547
NlaIV GGNNCC 1 cut(s) 27
NsbI TGCGCA 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 720
PdmI GAANNNNTTC 1 cut(s) 754
PfeI GAWTC 1 cut(s) 631
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 2 cut(s) 428, 453
PleI GAGTC 2 cut(s) 64, 238
PpsI GAGTC 2 cut(s) 64, 238
Psp6I CCWGG 3 cut(s) 169, 406, 446
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 3 cut(s) 169, 406, 446
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 173, 410
RsaI GTAC 2 cut(s) 345, 680
RsaNI GTAC 2 cut(s) 344, 679
SalI GTCGAC 1 cut(s) 707
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 1 cut(s) 485
SatI GCNGC 2 cut(s) 427, 452
Sau3AI GATC 1 cut(s) 378
Sau96I GGNCC 2 cut(s) 173, 410
SchI GAGTC 2 cut(s) 65, 238
ScrFI CCNGG 4 cut(s) 171, 209, 408, 448
SduI GDGCHC 4 cut(s) 147, 437, 472, 483
SetI ASST 8 cut(s) 73, 361, 372, 389, 405, 505, 599, 732
SfaNI GCATC 3 cut(s) 178, 609, 662
SinI GGWCC 2 cut(s) 173, 410
Sse9I AATT 5 cut(s) 88, 688, 716, 737, 751
SsiI CCGC 1 cut(s) 427
StyD4I CCNGG 4 cut(s) 169, 207, 406, 446
TaaI ACNGT 3 cut(s) 325, 672, 685
TaqI TCGA 1 cut(s) 708
TasI AATT 5 cut(s) 88, 688, 716, 737, 751
TatI WGTACW 1 cut(s) 678
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 1 cut(s) 631
Tru1I TTAA 1 cut(s) 485
Tru9I TTAA 1 cut(s) 485
TscAI CASTG 2 cut(s) 483, 688
TseI GCWGC 1 cut(s) 451
TspDTI ATGAA 3 cut(s) 119, 143, 525
TspGWI ACGGA 2 cut(s) 162, 646
TspRI CASTG 2 cut(s) 483, 688
VneI GTGCAC 2 cut(s) 143, 468
VpaK11BI GGWCC 2 cut(s) 173, 410
XapI RAATTY 3 cut(s) 688, 737, 751
XmiI GTMKAC 1 cut(s) 708
XmnI GAANNNNTTC 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.