Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006031

Physical Location & Seq

Genomic Coordinates Reverse (-)

5054815 .. 5057787

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06470.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCCGTTTATCTTTGCTCGCGAGGCTCCTAAGCTATGGAGGAAAGTATGCGCAGAGACTTCAACTGAGCTTTCGCTTCTCGCCGGAAATTGGAAGTTTGTCCTTGCTGGTCTCATTTTTCAGTATCTTCATGGAGTAGCTGCTCATGGAGTCCATTATTTACATCGGCCAGGACCAACCCTTCAAGATGCTGGGTTCTTTCTACTCCCGGAACTTGGTCAAGCCAAAAATTATCTAAGTGAGACTCTCTTCGCTGTCATCTTCTTTTCCTTTATCTTGTGGACATTTCACCCTTTTGTTTTCCAGTTGAAAAAGATATATACAGTCCTGATATGGTGCAGAGTATTTGTGTATTTAGCCGTGTGTCAAATGCTCCGGATCATCACCTTCTACTCCACTCTACTTCCTGGTCCAAGCTACCATTGTCGTGAGGGCTCTAATCTTGCCAGGCTGCCCCCTCCAGAGAGTGCACTTGAAGTGCTCTTGATCAACTTTCCCCAAGGCATTGTGTATGGTTGTGGTGATTTGATTTTTTCATCACACATGATTTTTACCTTAGTATTTGTGCGCACATATCAGAAATATGGAACAAGGAGGTGCTTTAAGCAGCTTGCTTGGTCAGTTGCTGTGGTTCAGAGCCTCCTGATTCTAGCTTCTCGCAAACATTACACAGTGGACGTTGTTGTTGCCTGGTATACCGTGAATTTGGTAGTGTTCTTTATAGACCAAAAATTGCCAGAACTGCCTGATCGATCTACATCTCAACCACTGCTACCAATGAACACCAGAGAGAAGGATAGCAAGAACAGAGAAGAGCTTGACAAATTCCGTAACGGAAATTCTGCCAACATTACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

287

Amino Acids

32.84

Weight (kDa)

9.28

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29525 AT2G29525 AT2G29525 AT2G29525 AT2G29525
fragaria_vesca	FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390
malus_domestica	MD03G1081100.v1.1
prunus_persica	Prupe.6G065700_v2.0.a1
pyrus_communis	pycom03g06470
rosa_chinensis	RchiOBHm_Chr5g0067241
rosa_laevigata	RLG00000035918
rosa_multiflora	Rmu_sc0000015.1_g000016
rosa_roxburghii	Rroxscaffold_1G00013890
rosa_rugosa	Rorug05G0383100 Rorug05G0383100 Rorug05G0383200
rosa_samantha	Rh5AG442600 Rh5BG459700 Rh5CG482100 Rh5DG474600
rosa_wichuraiana	Rw5G041360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	52, 569
AccI	GTMKAC	1 cut(s)	695
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	375
AclWI	GGATC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	3 cut(s)	703, 824, 838
AfiI	CCNNNNNNNGG	2 cut(s)	90, 215
AgsI	TTSAA	4 cut(s)	63, 185, 310, 476
AjnI	CCWGG	4 cut(s)	169, 406, 446, 689
AluBI	AGCT	7 cut(s)	34, 70, 140, 417, 610, 653, 817
AluI	AGCT	7 cut(s)	34, 70, 140, 417, 610, 653, 817
Alw21I	GWGCWC	2 cut(s)	472, 483
Alw26I	GTCTC	3 cut(s)	50, 116, 236
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	626
Aor13HI	TCCGGA	1 cut(s)	375
AoxI	GGCC	1 cut(s)	167
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	140, 451, 607
ApoI	RAATTY	3 cut(s)	703, 824, 838
AspLEI	GCGC	2 cut(s)	53, 570
AspS9I	GGNCC	2 cut(s)	173, 410
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	281, 376, 533
AvaII	GGWCC	2 cut(s)	173, 410
BaeGI	GKGCMC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	437
Bbv12I	GWGCWC	2 cut(s)	472, 483
BbvI	GCAGC	3 cut(s)	127, 438, 619
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	4 cut(s)	171, 408, 448, 691
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	3 cut(s)	50, 116, 236
BfaI	CTAG	1 cut(s)	650
BisI	GCNGC	3 cut(s)	141, 452, 608
BlsI	GCNGC	3 cut(s)	142, 453, 609
Bme1390I	CCNGG	5 cut(s)	171, 209, 408, 448, 691
Bme18I	GGWCC	2 cut(s)	173, 410
BmgT120I	GGNCC	2 cut(s)	173, 410
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	5 cut(s)	171, 209, 408, 448, 691
BmsI	GCATC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	751
BsaBI	GATNNNNATC	1 cut(s)	757
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	499
BsaWI	WCCGGW	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 215
Bse1I	ACTGG	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	757
BseAI	TCCGGA	1 cut(s)	375
BseBI	CCWGG	4 cut(s)	171, 408, 448, 691
BseCI	ATCGAT	1 cut(s)	751
BseDI	CCNNGG	1 cut(s)	499
BseJI	GATNNNNATC	1 cut(s)	757
BseLI	CCNNNNNNNGG	2 cut(s)	90, 215
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	127, 438, 619
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	169
BshVI	ATCGAT	1 cut(s)	751
BsiHKAI	GWGCWC	2 cut(s)	472, 483
BsiSI	CCGG	3 cut(s)	84, 209, 376
BslI	CCNNNNNNNGG	2 cut(s)	90, 215
BsmAI	GTCTC	3 cut(s)	50, 116, 236
BsnI	GGCC	1 cut(s)	169
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	437, 472, 483
Bsp13I	TCCGGA	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	378, 486, 748, 752
Bsp68I	TCGCGA	1 cut(s)	21
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	58
BspDI	ATCGAT	1 cut(s)	751
BspEI	TCCGGA	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	807
BspTNI	GGTCTC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	4 cut(s)	378, 486, 748, 752
BssNAI	GTATAC	1 cut(s)	696
BssT1I	CCWWGG	1 cut(s)	499
Bst1107I	GTATAC	1 cut(s)	696
Bst2UI	CCWGG	4 cut(s)	171, 408, 448, 691
Bst4CI	ACNGT	3 cut(s)	325, 673, 700
Bst6I	CTCTTC	2 cut(s)	254, 807
BstC8I	GCNNGC	2 cut(s)	19, 612
BstDEI	CTNAG	4 cut(s)	30, 66, 236, 556
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	53, 570
BstKTI	GATC	4 cut(s)	381, 489, 751, 755
BstMAI	GTCTC	3 cut(s)	50, 116, 236
BstMBI	GATC	4 cut(s)	378, 486, 748, 752
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 742
BstNI	CCWGG	4 cut(s)	171, 408, 448, 691
BstSCI	CCNGG	5 cut(s)	169, 207, 406, 446, 689
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	127, 438, 619
BstZ17I	GTATAC	1 cut(s)	696
Bsu15I	ATCGAT	1 cut(s)	751
BsuRI	GGCC	1 cut(s)	169
BsuTUI	ATCGAT	1 cut(s)	751
BtsI	GCAGTG	1 cut(s)	767
BtsIMutI	CAGTG	2 cut(s)	678, 767
BtuMI	TCGCGA	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	19, 612
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	2 cut(s)	53, 570
Cfr13I	GGNCC	2 cut(s)	173, 410
ClaI	ATCGAT	1 cut(s)	751
CviAII	CATG	3 cut(s)	131, 146, 544
DdeI	CTNAG	4 cut(s)	30, 66, 236, 556
DpnI	GATC	4 cut(s)	380, 488, 750, 754
DpnII	GATC	4 cut(s)	378, 486, 748, 752
EaeI	YGGCCR	1 cut(s)	167
Eam1104I	CTCTTC	2 cut(s)	254, 807
EarI	CTCTTC	2 cut(s)	254, 807
Eco130I	CCWWGG	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	173, 410
EcoRII	CCWGG	4 cut(s)	169, 406, 446, 689
EcoT14I	CCWWGG	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	3 cut(s)	134, 149, 547
FatI	CATG	3 cut(s)	130, 145, 543
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	3 cut(s)	141, 452, 608
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	3 cut(s)	141, 452, 608
FspAI	RTGCGCAY	1 cut(s)	569
FspBI	CTAG	1 cut(s)	650
FspI	TGCGCA	2 cut(s)	52, 569
GlaI	GCGC	2 cut(s)	52, 569
GluI	GCNGC	3 cut(s)	141, 452, 608
GsaI	CCCAGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	3 cut(s)	84, 209, 376
HhaI	GCGC	2 cut(s)	53, 570
Hin1II	CATG	3 cut(s)	134, 149, 547
Hin6I	GCGC	2 cut(s)	51, 568
HinP1I	GCGC	2 cut(s)	51, 568
HinfI	GANTC	3 cut(s)	150, 244, 646
HpaII	CCGG	3 cut(s)	84, 209, 376
HphI	GGTGA	3 cut(s)	281, 376, 533
Hpy166II	GTNNAC	4 cut(s)	282, 470, 676, 696
Hpy188I	TCNGA	2 cut(s)	579, 636
Hpy188III	TCNNGA	8 cut(s)	20, 185, 328, 376, 428, 461, 484, 643
Hpy8I	GTNNAC	4 cut(s)	282, 470, 676, 696
HpyAV	CCTTC	3 cut(s)	191, 397, 787
HpyCH4III	ACNGT	3 cut(s)	325, 673, 700
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	2 cut(s)	339, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 742
HpyF3I	CTNAG	4 cut(s)	30, 66, 236, 556
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	3 cut(s)	134, 149, 547
HspAI	GCGC	2 cut(s)	51, 568
Kpn2I	TCCGGA	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	378, 486, 748, 752
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	2 cut(s)	31, 378
Lsp1109I	GCAGC	3 cut(s)	127, 438, 619
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	1 cut(s)	830
MalI	GATC	4 cut(s)	380, 488, 750, 754
MboI	GATC	4 cut(s)	378, 486, 748, 752
MboII	GAAGA	4 cut(s)	119, 241, 253, 824
MhlI	GDGCHC	3 cut(s)	437, 472, 483
MluCI	AATT	6 cut(s)	88, 229, 703, 731, 824, 838
MlyI	GAGTC	2 cut(s)	159, 238
MnlI	CCTC	6 cut(s)	16, 33, 424, 468, 588, 650
MroI	TCCGGA	1 cut(s)	375
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	3 cut(s)	84, 209, 376
MspR9I	CCNGG	5 cut(s)	171, 209, 408, 448, 691
MvaI	CCWGG	4 cut(s)	171, 408, 448, 691
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	23, 742
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	4 cut(s)	378, 486, 748, 752
NlaIII	CATG	3 cut(s)	134, 149, 547
NlaIV	GGNNCC	1 cut(s)	27
NruI	TCGCGA	1 cut(s)	21
NsbI	TGCGCA	2 cut(s)	52, 569
PciSI	GCTCTTC	1 cut(s)	807
PfeI	GAWTC	1 cut(s)	646
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	142, 453, 609
PleI	GAGTC	2 cut(s)	158, 238
PpsI	GAGTC	2 cut(s)	158, 238
Psp6I	CCWGG	4 cut(s)	169, 406, 446, 689
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	4 cut(s)	169, 406, 446, 689
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	173, 410
PstNI	CAGNNNCTG	1 cut(s)	626
RruI	TCGCGA	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	3 cut(s)	141, 452, 608
Sau3AI	GATC	4 cut(s)	378, 486, 748, 752
Sau96I	GGNCC	2 cut(s)	173, 410
SchI	GAGTC	2 cut(s)	159, 238
ScrFI	CCNGG	5 cut(s)	171, 209, 408, 448, 691
SduI	GDGCHC	3 cut(s)	437, 472, 483
SfaNI	GCATC	1 cut(s)	178
SinI	GGWCC	2 cut(s)	173, 410
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	6 cut(s)	88, 229, 703, 731, 824, 838
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	5 cut(s)	169, 207, 406, 446, 689
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	3 cut(s)	325, 673, 700
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	1 cut(s)	751
TasI	AATT	6 cut(s)	88, 229, 703, 731, 824, 838
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	2 cut(s)	678, 774
TseI	GCWGC	3 cut(s)	140, 451, 607
TspDTI	ATGAA	3 cut(s)	119, 525, 794
TspGWI	ACGGA	2 cut(s)	818, 849
TspRI	CASTG	2 cut(s)	678, 774
VneI	GTGCAC	1 cut(s)	468
VpaK11BI	GGWCC	2 cut(s)	173, 410
XapI	RAATTY	3 cut(s)	703, 824, 838
XmiI	GTMKAC	1 cut(s)	695
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.