FvH4_3g37390

phosphatidylinositol ceramide inositolphosphotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006031
Physical Location & Seq
Forward (+)
32086326 .. 32090437
4112 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37390.t2

Sequence Viewer

Length: 864 bp
ATGCCGTTCTACTTTGCTCGTGAGGCTCCCAAGCTATGGAGGAAAATCTGCAATGAGTCGTCGACTGAAGTTTCGCTTCTGGCTGGCAATTGGAAGTTTGTTCTTGCTGGTCTCATTTGTCAGTATCTTCATGGACTAGCGGCGCATGGAGTTCACTATCTACATCGGCCAGGACCAACACTTCAGGATGCTGGCTTCTTTTTACTCCCGGAACTTGGACAAGACAAAATTTTTCTCAGTGAGACTCTGTTTGCTGCTGTATTTTTTTCTTTTATATTGTGGACATTTCACCCATTTGTTTTTCAGAGCAAAAAAATCTATACAGTTCTGATATGGTGCAGGGTCTTTGCTTATCTAGCTGTTTCTCAGTTTCTGCGGATCATCACCTTCTACTCCACTCAGCTTCCTGGTCCAAACTATCATTGCCGCGAGGGCTCAGAAGTTGCCAGGCTGCCCCCTCCAAAGAGTGCGCTTGAAGTTCTCTACTTTCCCCGAGCTGTTATGTATGGCTGTGGTGATTTGATTTTTTCATCACACATGATTTTCACTTTAGTATTTGTGCGTACATTTCAGAAATATGGAACAAGGAGGTGCATCAAGCAGTTTGCTTGGTTAGTTGCTGTGATTCTGAGTCTCTTGATTATAGCATCTCGTAAACACTACACTGTTGATATTGTTGTTGCCTGGTACACTGTAAATTTGGTGGTGTTCTTTGTGGACCAAAAATTGCCAGAATTGCCTGATCGGTCCGTAGGTTCTACATCTCCACCGCTACTACCAACGAGTACCAAGGATAGGGATAGCAGACTCGGAGAAGAGCTTGAAAAATTCCGAAATGGAAATTCTTCTGACATCACTACATAA

Protein Analysis

288

Amino Acids

32.85

Weight (kDa)

9.19

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2_C PF14360 170 - 201 1.6e-07 PAP2 superfamily C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 36
AccI GTMKAC 1 cut(s) 62
AccII CGCG 1 cut(s) 429
AciI CCGC 4 cut(s) 140, 376, 427, 770
AclWI GGATC 1 cut(s) 386
AcoI YGGCCR 1 cut(s) 167
AcsI RAATTY 4 cut(s) 228, 697, 827, 841
AcuI CTGAAG 2 cut(s) 87, 167
AfaI GTAC 3 cut(s) 565, 689, 787
AfiI CCNNNNNNNGG 3 cut(s) 36, 215, 795
AgsI TTSAA 2 cut(s) 476, 824
AjnI CCWGG 4 cut(s) 169, 406, 446, 683
AluBI AGCT 5 cut(s) 34, 359, 403, 497, 820
AluI AGCT 5 cut(s) 34, 359, 403, 497, 820
Alw26I GTCTC 3 cut(s) 116, 236, 638
AlwI GGATC 1 cut(s) 386
AlwNI CAGNNNCTG 1 cut(s) 373
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 254, 451
ApoI RAATTY 4 cut(s) 228, 697, 827, 841
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
Asp700I GAANNNNTTC 1 cut(s) 844
AspLEI GCGC 2 cut(s) 145, 472
AspS9I GGNCC 4 cut(s) 173, 410, 718, 747
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 281, 376, 527
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 4 cut(s) 173, 410, 718, 747
BanII GRGCYC 1 cut(s) 437
BauI CACGAG 1 cut(s) 18
BbvI GCAGC 2 cut(s) 241, 438
BciT130I CCWGG 4 cut(s) 171, 408, 448, 685
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 3 cut(s) 116, 236, 638
BfaI CTAG 2 cut(s) 137, 356
BglI GCCNNNNNGGC 1 cut(s) 432
BisI GCNGC 4 cut(s) 141, 255, 427, 452
BlsI GCNGC 4 cut(s) 142, 256, 428, 453
Bme1390I CCNGG 5 cut(s) 171, 209, 408, 448, 685
Bme18I GGWCC 4 cut(s) 173, 410, 718, 747
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 4 cut(s) 173, 410, 718, 747
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 5 cut(s) 171, 209, 408, 448, 685
BmsI GCATC 3 cut(s) 178, 603, 656
BpuMI CCSGG 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 789
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 215, 795
Bse3DI GCAATG 2 cut(s) 58, 421
BseBI CCWGG 4 cut(s) 171, 408, 448, 685
BseDI CCNNGG 1 cut(s) 789
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 3 cut(s) 36, 215, 795
BseMI GCAATG 2 cut(s) 58, 421
BseMII CTCAG 5 cut(s) 250, 380, 413, 450, 620
BseXI GCAGC 2 cut(s) 241, 438
BsgI GTGCAG 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 36, 215, 795
BsmAI GTCTC 3 cut(s) 116, 236, 638
BsnI GGCC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 437
Bsp143I GATC 2 cut(s) 378, 742
BspACI CCGC 4 cut(s) 140, 376, 427, 770
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 5 cut(s) 249, 379, 412, 449, 621
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 1 cut(s) 386
BspQI GCTCTTC 1 cut(s) 810
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 2 cut(s) 58, 421
BssECI CCNNGG 1 cut(s) 789
BssMI GATC 2 cut(s) 378, 742
BssSI CACGAG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 789
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 4 cut(s) 171, 408, 448, 685
Bst4CI ACNGT 3 cut(s) 325, 667, 694
Bst6I CTCTTC 1 cut(s) 810
BstC8I GCNNGC 2 cut(s) 85, 193
BstDEI CTNAG 5 cut(s) 236, 366, 399, 436, 629
BstF5I GGATG 1 cut(s) 193
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 2 cut(s) 145, 472
BstKTI GATC 2 cut(s) 381, 745
BstMAI GTCTC 3 cut(s) 116, 236, 638
BstMBI GATC 2 cut(s) 378, 742
BstMWI GCNNNNNNNGC 4 cut(s) 23, 356, 432, 736
BstNI CCWGG 4 cut(s) 171, 408, 448, 685
BstSCI CCNGG 5 cut(s) 169, 207, 406, 446, 683
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 241, 438
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 3 cut(s) 244, 663, 690
Cac8I GCNNGC 2 cut(s) 85, 193
CaiI CAGNNNCTG 1 cut(s) 373
CfoI GCGC 2 cut(s) 145, 472
Cfr13I GGNCC 4 cut(s) 173, 410, 718, 747
CpoI CGGWCCG 1 cut(s) 747
Csp6I GTAC 3 cut(s) 564, 688, 786
CspI CGGWCCG 1 cut(s) 747
CviAII CATG 3 cut(s) 131, 146, 538
CviQI GTAC 3 cut(s) 564, 688, 786
DdeI CTNAG 5 cut(s) 236, 366, 399, 436, 629
DpnI GATC 2 cut(s) 380, 744
DpnII GATC 2 cut(s) 378, 742
EaeI YGGCCR 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Eco130I CCWWGG 1 cut(s) 789
Eco24I GRGCYC 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 4 cut(s) 173, 410, 718, 747
Eco57I CTGAAG 2 cut(s) 87, 167
Eco88I CYCGRG 1 cut(s) 492
EcoRII CCWGG 4 cut(s) 169, 406, 446, 683
EcoT14I CCWWGG 1 cut(s) 789
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 3 cut(s) 134, 149, 541
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 3 cut(s) 130, 145, 537
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 4 cut(s) 141, 255, 427, 452
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 4 cut(s) 141, 255, 427, 452
FspBI CTAG 2 cut(s) 137, 356
GlaI GCGC 2 cut(s) 144, 471
GluI GCNGC 4 cut(s) 141, 255, 427, 452
HaeIII GGCC 1 cut(s) 169
HapII CCGG 1 cut(s) 209
HhaI GCGC 2 cut(s) 145, 472
Hin1II CATG 3 cut(s) 134, 149, 541
Hin6I GCGC 2 cut(s) 143, 470
HinP1I GCGC 2 cut(s) 143, 470
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 5 cut(s) 56, 244, 625, 631, 807
HpaII CCGG 1 cut(s) 209
HphI GGTGA 3 cut(s) 281, 376, 527
Hpy166II GTNNAC 6 cut(s) 63, 154, 282, 656, 690, 718
Hpy188I TCNGA 8 cut(s) 306, 330, 439, 573, 630, 812, 833, 850
Hpy188III TCNNGA 3 cut(s) 20, 185, 637
Hpy8I GTNNAC 6 cut(s) 63, 154, 282, 656, 690, 718
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 3 cut(s) 325, 667, 694
HpyCH4V TGCA 3 cut(s) 51, 339, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 356, 432, 736
HpyF3I CTNAG 5 cut(s) 236, 366, 399, 436, 629
Hsp92II CATG 3 cut(s) 134, 149, 541
HspAI GCGC 2 cut(s) 143, 470
Kzo9I GATC 2 cut(s) 378, 742
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 2 cut(s) 241, 438
LweI GCATC 3 cut(s) 178, 603, 656
MaeI CTAG 2 cut(s) 137, 356
MalI GATC 2 cut(s) 380, 744
MboI GATC 2 cut(s) 378, 742
MboII GAAGA 3 cut(s) 119, 827, 837
MfeI CAATTG 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 437
MluCI AATT 7 cut(s) 88, 228, 697, 725, 734, 827, 841
MlyI GAGTC 4 cut(s) 65, 238, 640, 801
MnlI CCTC 5 cut(s) 16, 33, 424, 468, 582
MroXI GAANNNNTTC 1 cut(s) 844
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 5 cut(s) 171, 209, 408, 448, 685
MunI CAATTG 1 cut(s) 88
MvaI CCWGG 4 cut(s) 171, 408, 448, 685
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 4 cut(s) 23, 356, 432, 736
NciI CCSGG 1 cut(s) 209
NdeII GATC 2 cut(s) 378, 742
NlaIII CATG 3 cut(s) 134, 149, 541
NlaIV GGNNCC 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 810
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 1 cut(s) 625
PflMI CCANNNNNTGG 1 cut(s) 36
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 4 cut(s) 142, 256, 428, 453
PleI GAGTC 4 cut(s) 64, 238, 639, 801
PpsI GAGTC 4 cut(s) 64, 238, 639, 801
Psp6I CCWGG 4 cut(s) 169, 406, 446, 683
PspGI CCWGG 4 cut(s) 169, 406, 446, 683
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 4 cut(s) 173, 410, 718, 747
PstNI CAGNNNCTG 1 cut(s) 373
RsaI GTAC 3 cut(s) 565, 689, 787
RsaNI GTAC 3 cut(s) 564, 688, 786
Rsr2I CGGWCCG 1 cut(s) 747
RsrII CGGWCCG 1 cut(s) 747
SalI GTCGAC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 810
SatI GCNGC 4 cut(s) 141, 255, 427, 452
Sau3AI GATC 2 cut(s) 378, 742
Sau96I GGNCC 4 cut(s) 173, 410, 718, 747
SchI GAGTC 4 cut(s) 65, 238, 640, 801
ScrFI CCNGG 5 cut(s) 171, 209, 408, 448, 685
SduI GDGCHC 1 cut(s) 437
SetI ASST 8 cut(s) 36, 361, 389, 405, 499, 593, 757, 822
SfaNI GCATC 3 cut(s) 178, 603, 656
SinI GGWCC 4 cut(s) 173, 410, 718, 747
Sse9I AATT 7 cut(s) 88, 228, 697, 725, 734, 827, 841
SsiI CCGC 4 cut(s) 140, 376, 427, 770
SspMI CTAG 2 cut(s) 137, 356
StyD4I CCNGG 5 cut(s) 169, 207, 406, 446, 683
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 325, 667, 694
TaqI TCGA 1 cut(s) 62
TaqII GACCGA 1 cut(s) 735
TasI AATT 7 cut(s) 88, 228, 697, 725, 734, 827, 841
TauI GCSGC 2 cut(s) 143, 429
TfiI GAWTC 1 cut(s) 625
TscAI CASTG 3 cut(s) 244, 670, 697
TseI GCWGC 2 cut(s) 254, 451
TspDTI ATGAA 2 cut(s) 119, 519
TspGWI ACGGA 1 cut(s) 739
TspRI CASTG 3 cut(s) 244, 670, 697
Van91I CCANNNNNTGG 1 cut(s) 36
VpaK11BI GGWCC 4 cut(s) 173, 410, 718, 747
XapI RAATTY 4 cut(s) 228, 697, 827, 841
XmiI GTMKAC 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 2 cut(s) 137, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.