Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006031

Physical Location & Seq

Genomic Coordinates Reverse (-)

17106260 .. 17110147

Gene Structure 3888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCCGTTTTACTTTGCTCGTGAGGCTCCTAAGTTGTGGAGGAAAATATGCAATGAGTCGTCAGCTGAAGCTTCGCTTCTGGCTGGGAATTGGAAGTTTGTTCTTGCTGGTCTCATTTGTCAGTATCTTCATGGACTAGCTGTGCACGGAGTTCATTATCTACATCGGCCAGGACCAATACTTCAGGATGCTGGCTTCTTTATACTCCCGGAACTTGGACAAGACAAAACTTATCTGAGTGAGACTCTGTTTGCTGTTGTATTTTTTTCTTTTATCTTGTGGACATTTCACCCGTTTGTTTTTCAGAGCAAAAAAATCTATACAGTTCTGATATGGTGCAGGGTACTTGCTTATTTAGCTGTGTCTCAGTTTCTCCGGATCATCACCTTCTACGCCACTCAGCTTCCTGGTCCTAACTATCATTGCCGCGAGGGCTCAGAACTTGCCAGGCTGCCCCCTCCAAAGAGTGCACTTGAAGTGCTCTTAATCAACTTTCCCCAAGGTGTTATGTATGGCTGTGGTGATTTGATTTTTTCATCGCACATGATTTTCACTTTAGTATTTGTGCGCACATTTCAGAAATACGGAACAAGGAGGTGCATCAAGCAGTTTGCTTGGTTAGTTTCTGTGATTCTAAGTGTCTTGATTATAGCATCTCGTAAACATTACACCGTTGATGTTGTTGTTGCCTGGTACACTGTAAATTTGGTAGTTTCCTTTGTCGACCAAAAATTGCCAGAATTGCCTGATCGGTCCCTGGGTTCTACATCTCCACCGCTACTACCAACAAGCACCAAGGATAGGGATGGCAAAAACAGAGAAGAGCTTGAAAAATTCCGGAATGGAAATTCTTCTGACATCAGCACACGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

291

Amino Acids

33.19

Weight (kDa)

9.27

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2_C	PF14360	172 - 241	5.5e-23	PAP2 superfamily C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29525 AT2G29525 AT2G29525 AT2G29525 AT2G29525
fragaria_vesca	FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390
malus_domestica	MD03G1081100.v1.1
prunus_persica	Prupe.6G065700_v2.0.a1
pyrus_communis	pycom03g06470
rosa_chinensis	RchiOBHm_Chr5g0067241
rosa_laevigata	RLG00000035918
rosa_multiflora	Rmu_sc0000015.1_g000016
rosa_roxburghii	Rroxscaffold_1G00013890
rosa_rugosa	Rorug05G0383100 Rorug05G0383100 Rorug05G0383200
rosa_samantha	Rh5AG442600 Rh5BG459700 Rh5CG482100 Rh5DG474600
rosa_wichuraiana	Rw5G041360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	723
AccII	CGCG	1 cut(s)	429
AccIII	TCCGGA	2 cut(s)	375, 837
AciI	CCGC	2 cut(s)	427, 776
AclWI	GGATC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	3 cut(s)	703, 833, 847
AcuI	CTGAAG	2 cut(s)	87, 167
AfaI	GTAC	2 cut(s)	345, 695
AfiI	CCNNNNNNNGG	2 cut(s)	215, 801
AgsI	TTSAA	2 cut(s)	476, 830
AjnI	CCWGG	5 cut(s)	169, 406, 446, 689, 756
AluBI	AGCT	6 cut(s)	65, 71, 140, 359, 403, 826
AluI	AGCT	6 cut(s)	65, 71, 140, 359, 403, 826
Alw21I	GWGCWC	3 cut(s)	147, 472, 483
Alw26I	GTCTC	3 cut(s)	116, 236, 369
Alw44I	GTGCAC	2 cut(s)	143, 468
AlwI	GGATC	1 cut(s)	386
Aor13HI	TCCGGA	2 cut(s)	375, 837
AoxI	GGCC	1 cut(s)	167
ApaLI	GTGCAC	2 cut(s)	143, 468
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	3 cut(s)	703, 833, 847
Asp700I	GAANNNNTTC	1 cut(s)	850
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	3 cut(s)	173, 410, 753
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	281, 376, 533
AvaII	GGWCC	3 cut(s)	173, 410, 753
BaeGI	GKGCMC	2 cut(s)	147, 472
BanII	GRGCYC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	3 cut(s)	147, 472, 483
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	1 cut(s)	800
BciT130I	CCWGG	5 cut(s)	171, 408, 448, 691, 758
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	3 cut(s)	116, 236, 369
BfaI	CTAG	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	432
BisI	GCNGC	2 cut(s)	427, 452
BlsI	GCNGC	2 cut(s)	428, 453
Bme1390I	CCNGG	6 cut(s)	171, 209, 408, 448, 691, 758
Bme18I	GGWCC	3 cut(s)	173, 410, 753
BmgT120I	GGNCC	3 cut(s)	173, 410, 753
BmiI	GGNNCC	2 cut(s)	27, 755
BmrFI	CCNGG	6 cut(s)	171, 209, 408, 448, 691, 758
BmsI	GCATC	3 cut(s)	178, 609, 662
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpuMI	CCSGG	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	4 cut(s)	499, 756, 757, 795
BsaWI	WCCGGW	2 cut(s)	375, 837
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 801
Bse3DI	GCAATG	2 cut(s)	58, 421
BseAI	TCCGGA	2 cut(s)	375, 837
BseBI	CCWGG	5 cut(s)	171, 408, 448, 691, 758
BseDI	CCNNGG	4 cut(s)	499, 756, 757, 795
BseGI	GGATG	2 cut(s)	193, 811
BseLI	CCNNNNNNNGG	2 cut(s)	215, 801
BseMI	GCAATG	2 cut(s)	58, 421
BseMII	CTCAG	4 cut(s)	227, 380, 413, 450
BseSI	GKGCMC	2 cut(s)	147, 472
BseXI	GCAGC	1 cut(s)	438
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	169
BsiHKAI	GWGCWC	3 cut(s)	147, 472, 483
BsiSI	CCGG	3 cut(s)	209, 376, 838
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	2 cut(s)	215, 801
BsmAI	GTCTC	3 cut(s)	116, 236, 369
BsmFI	GGGAC	1 cut(s)	739
BsnI	GGCC	1 cut(s)	169
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	4 cut(s)	147, 437, 472, 483
Bsp13I	TCCGGA	2 cut(s)	375, 837
Bsp143I	GATC	2 cut(s)	378, 748
BspACI	CCGC	2 cut(s)	427, 776
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	4 cut(s)	228, 379, 412, 449
BspEI	TCCGGA	2 cut(s)	375, 837
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	27, 755
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	816
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	58, 421
BssECI	CCNNGG	4 cut(s)	499, 756, 757, 795
BssMI	GATC	2 cut(s)	378, 748
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	499, 795
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	5 cut(s)	171, 408, 448, 691, 758
Bst4CI	ACNGT	3 cut(s)	325, 673, 700
Bst6I	CTCTTC	1 cut(s)	816
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	6 cut(s)	30, 236, 366, 399, 436, 635
BstF5I	GGATG	2 cut(s)	193, 811
BstFNI	CGCG	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	2 cut(s)	381, 751
BstMAI	GTCTC	3 cut(s)	116, 236, 369
BstMBI	GATC	2 cut(s)	378, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 356, 432, 742
BstNI	CCWGG	5 cut(s)	171, 408, 448, 691, 758
BstSCI	CCNGG	6 cut(s)	169, 207, 406, 446, 689, 756
BstSLI	GKGCMC	2 cut(s)	147, 472
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	193, 811
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	3 cut(s)	173, 410, 753
Csp6I	GTAC	2 cut(s)	344, 694
CviAII	CATG	2 cut(s)	131, 544
CviQI	GTAC	2 cut(s)	344, 694
DdeI	CTNAG	6 cut(s)	30, 236, 366, 399, 436, 635
DpnI	GATC	2 cut(s)	380, 750
DpnII	GATC	2 cut(s)	378, 748
EaeI	YGGCCR	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco130I	CCWWGG	2 cut(s)	499, 795
Eco24I	GRGCYC	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	3 cut(s)	173, 410, 753
Eco57I	CTGAAG	2 cut(s)	87, 167
EcoRII	CCWGG	5 cut(s)	169, 406, 446, 689, 756
EcoT14I	CCWWGG	2 cut(s)	499, 795
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	2 cut(s)	499, 795
FaeI	CATG	2 cut(s)	134, 547
FaiI	YATR	9 cut(s)	49, 132, 203, 321, 334, 509, 513, 545, 650
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	2 cut(s)	130, 543
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	2 cut(s)	427, 452
FokI	GGATG	2 cut(s)	200, 818
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	2 cut(s)	427, 452
FspAI	RTGCGCAY	1 cut(s)	569
FspBI	CTAG	1 cut(s)	137
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	2 cut(s)	427, 452
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	3 cut(s)	209, 376, 838
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	2 cut(s)	134, 547
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	3 cut(s)	56, 244, 631
HpaII	CCGG	3 cut(s)	209, 376, 838
HphI	GGTGA	3 cut(s)	281, 376, 533
Hpy166II	GTNNAC	6 cut(s)	145, 282, 470, 662, 696, 724
Hpy188I	TCNGA	7 cut(s)	237, 306, 330, 439, 579, 856, 875
Hpy188III	TCNNGA	5 cut(s)	20, 185, 376, 643, 838
Hpy8I	GTNNAC	6 cut(s)	145, 282, 470, 662, 696, 724
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	3 cut(s)	325, 673, 700
HpyCH4V	TGCA	5 cut(s)	51, 145, 339, 470, 600
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 356, 432, 742
HpyF3I	CTNAG	6 cut(s)	30, 236, 366, 399, 436, 635
Hsp92II	CATG	2 cut(s)	134, 547
HspAI	GCGC	1 cut(s)	568
Kpn2I	TCCGGA	2 cut(s)	375, 837
Kzo9I	GATC	2 cut(s)	378, 748
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	1 cut(s)	438
LweI	GCATC	3 cut(s)	178, 609, 662
MaeI	CTAG	1 cut(s)	137
MalI	GATC	2 cut(s)	380, 750
MboI	GATC	2 cut(s)	378, 748
MboII	GAAGA	3 cut(s)	119, 833, 843
MhlI	GDGCHC	4 cut(s)	147, 437, 472, 483
MluCI	AATT	6 cut(s)	88, 703, 731, 740, 833, 847
MlyI	GAGTC	2 cut(s)	65, 238
MnlI	CCTC	5 cut(s)	16, 33, 424, 468, 588
MroI	TCCGGA	2 cut(s)	375, 837
MroXI	GAANNNNTTC	1 cut(s)	850
MseI	TTAA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	3 cut(s)	209, 376, 838
MspR9I	CCNGG	6 cut(s)	171, 209, 408, 448, 691, 758
MvaI	CCWGG	5 cut(s)	171, 408, 448, 691, 758
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	23, 356, 432, 742
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	378, 748
NlaIII	CATG	2 cut(s)	134, 547
NlaIV	GGNNCC	2 cut(s)	27, 755
NsbI	TGCGCA	1 cut(s)	569
PasI	CCCWGGG	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	816
PdmI	GAANNNNTTC	1 cut(s)	850
PfeI	GAWTC	1 cut(s)	631
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	428, 453
PleI	GAGTC	2 cut(s)	64, 238
PpsI	GAGTC	2 cut(s)	64, 238
Psp6I	CCWGG	5 cut(s)	169, 406, 446, 689, 756
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	5 cut(s)	169, 406, 446, 689, 756
PspN4I	GGNNCC	2 cut(s)	27, 755
PspPI	GGNCC	3 cut(s)	173, 410, 753
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	345, 695
RsaNI	GTAC	2 cut(s)	344, 694
SalI	GTCGAC	1 cut(s)	722
SapI	GCTCTTC	1 cut(s)	816
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	2 cut(s)	427, 452
Sau3AI	GATC	2 cut(s)	378, 748
Sau96I	GGNCC	3 cut(s)	173, 410, 753
SchI	GAGTC	2 cut(s)	65, 238
ScrFI	CCNGG	6 cut(s)	171, 209, 408, 448, 691, 758
SduI	GDGCHC	4 cut(s)	147, 437, 472, 483
SetI	ASST	9 cut(s)	67, 73, 142, 361, 389, 405, 505, 599, 828
SfaNI	GCATC	3 cut(s)	178, 609, 662
SinI	GGWCC	3 cut(s)	173, 410, 753
Sse9I	AATT	6 cut(s)	88, 703, 731, 740, 833, 847
SsiI	CCGC	2 cut(s)	427, 776
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	6 cut(s)	169, 207, 406, 446, 689, 756
StyI	CCWWGG	2 cut(s)	499, 795
TaaI	ACNGT	3 cut(s)	325, 673, 700
TaqI	TCGA	1 cut(s)	723
TaqII	GACCGA	1 cut(s)	741
TasI	AATT	6 cut(s)	88, 703, 731, 740, 833, 847
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	1 cut(s)	703
TseI	GCWGC	1 cut(s)	451
TspDTI	ATGAA	3 cut(s)	119, 143, 525
TspGWI	ACGGA	2 cut(s)	162, 600
TspRI	CASTG	1 cut(s)	703
VneI	GTGCAC	2 cut(s)	143, 468
VpaK11BI	GGWCC	3 cut(s)	173, 410, 753
XapI	RAATTY	3 cut(s)	703, 833, 847
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	850
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.