Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006031

Physical Location & Seq

Genomic Coordinates Reverse (-)

4548739 .. 4553210

Gene Structure 4472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G065700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCCGGTTATCTTTGCTCGTGAGGCTCCCAAGCTATGGAGGAAAGTATGCGCAGAGACGTCAACTGAAATTTCGCTTCTTGCCGGGAATTGGAAGTATTTTCTTGCTGGTCTCGTTTTTCAGTATCTTCATGGACTAGCTGCTCATGGTGTTCATTATTTACATCGGCCAGGACCGACGCTTCAGGATGCTGGGTTCTTTTTCCTCCCGGAACTTGGTCAAGACAGAACTTATCTTAGTGAGACTCTCTTTTCAGTCATCTTTTTCTCCTTTGTCTTGTGGACTTTTCACCCCTTTGTTTTCCAGTACAAAAAGATATATACAGTTCTGATATGGTGCAGAGTATTTGCTTATTTAGGCGTCTCTCAAATGCTCCGGATTATAACCTTCTACTCAACTCTGCTTCCTGGTCCAAACTATCATTGCCGCGAGGGCTCAAAACTTGCCAGGCTGCCCCCTCCAGAGAGTGCACTTGAAGTGCTCTTAATCAACTTTCCCCGAGGAGTAATGTATGGTTGTGGTGATTTGATCTTTTCATCACATATGATTTTTACCTTAGTATTTGTGCGCACATATCAGAAATATGGAACAAAGAGGTGCATTAAGCAGATTGCTTGGTTAGTGGCTGTTATTCAGAGCCTCCTGATTGTAGCATCTCGCAAACATTACACTGTTGACATTGTTGTTGCCTGGTACACTGTAAATTTGGTAGTGTTCTTTATTGACCAAAAATTGCCAGAATTGCCTGATCGGTCTCTTGGTTCTACATCTCAACAACTGCTACCAATAAGCAGCAGAGATAAAGATAGCAAGAACAGAGAAGAGCTTGACAAATTCCGGAATGGAAATTCTGCCAACATTACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

290

Amino Acids

33.22

Weight (kDa)

9.38

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29525 AT2G29525 AT2G29525 AT2G29525 AT2G29525
fragaria_vesca	FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390 FvH4_3g37390
malus_domestica	MD03G1081100.v1.1
prunus_persica	Prupe.6G065700_v2.0.a1
pyrus_communis	pycom03g06470
rosa_chinensis	RchiOBHm_Chr5g0067241
rosa_laevigata	RLG00000035918
rosa_multiflora	Rmu_sc0000015.1_g000016
rosa_roxburghii	Rroxscaffold_1G00013890
rosa_rugosa	Rorug05G0383100 Rorug05G0383100 Rorug05G0383200
rosa_samantha	Rh5AG442600 Rh5BG459700 Rh5CG482100 Rh5DG474600
rosa_wichuraiana	Rw5G041360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
AatII	GACGTC	1 cut(s)	62
Acc16I	TGCGCA	2 cut(s)	52, 569
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccII	CGCG	1 cut(s)	429
AccIII	TCCGGA	2 cut(s)	375, 837
AciI	CCGC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	4 cut(s)	69, 703, 833, 847
AcuI	CTGAAG	1 cut(s)	167
AcyI	GRCGYC	2 cut(s)	59, 360
AfaI	GTAC	2 cut(s)	308, 695
AfiI	CCNNNNNNNGG	3 cut(s)	36, 90, 215
AgsI	TTSAA	1 cut(s)	476
AjnI	CCWGG	4 cut(s)	169, 406, 446, 689
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	3 cut(s)	34, 140, 826
AluI	AGCT	3 cut(s)	34, 140, 826
Alw21I	GWGCWC	2 cut(s)	472, 483
Alw26I	GTCTC	5 cut(s)	50, 116, 236, 367, 759
Alw44I	GTGCAC	1 cut(s)	468
Ama87I	CYCGRG	1 cut(s)	498
Aor13HI	TCCGGA	2 cut(s)	375, 837
AoxI	GGCC	1 cut(s)	167
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	140, 451, 792
ApoI	RAATTY	4 cut(s)	69, 703, 833, 847
AspLEI	GCGC	2 cut(s)	53, 570
AspS9I	GGNCC	2 cut(s)	173, 410
AsuC2I	CCSGG	2 cut(s)	85, 209
AsuHPI	GGTGA	2 cut(s)	281, 533
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	2 cut(s)	173, 410
BaeGI	GKGCMC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	472, 483
BbvI	GCAGC	3 cut(s)	127, 438, 804
BciT130I	CCWGG	4 cut(s)	171, 408, 448, 691
BcnI	CCSGG	2 cut(s)	85, 209
BcoDI	GTCTC	5 cut(s)	50, 116, 236, 367, 759
BfaI	CTAG	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	432
BisI	GCNGC	4 cut(s)	141, 427, 452, 793
BlsI	GCNGC	4 cut(s)	142, 428, 453, 794
Bme1390I	CCNGG	6 cut(s)	85, 171, 209, 408, 448, 691
Bme18I	GGWCC	2 cut(s)	173, 410
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	2 cut(s)	173, 410
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	6 cut(s)	85, 171, 209, 408, 448, 691
BmsI	GCATC	2 cut(s)	178, 662
BpmI	CTGGAG	1 cut(s)	444
BpuMI	CCSGG	2 cut(s)	85, 209
BsaHI	GRCGYC	2 cut(s)	59, 360
BsaI	GGTCTC	2 cut(s)	116, 759
BsaJI	CCNNGG	1 cut(s)	499
BsaWI	WCCGGW	2 cut(s)	375, 837
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 90, 215
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	421
BseAI	TCCGGA	2 cut(s)	375, 837
BseBI	CCWGG	4 cut(s)	171, 408, 448, 691
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	3 cut(s)	36, 90, 215
BseMI	GCAATG	1 cut(s)	421
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	516
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	127, 438, 804
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	472, 483
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	5 cut(s)	5, 84, 209, 376, 838
BslI	CCNNNNNNNGG	3 cut(s)	36, 90, 215
BsmAI	GTCTC	5 cut(s)	50, 116, 236, 367, 759
BsmBI	CGTCTC	2 cut(s)	50, 367
BsnI	GGCC	1 cut(s)	169
Bso31I	GGTCTC	2 cut(s)	116, 759
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	3 cut(s)	437, 472, 483
Bsp13I	TCCGGA	2 cut(s)	375, 837
Bsp143I	GATC	2 cut(s)	528, 748
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	1 cut(s)	169
BspEI	TCCGGA	2 cut(s)	375, 837
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	816
BspTNI	GGTCTC	2 cut(s)	116, 759
BsrDI	GCAATG	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	2 cut(s)	528, 748
BssNI	GRCGYC	2 cut(s)	59, 360
BssSI	CACGAG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	4 cut(s)	171, 408, 448, 691
Bst4CI	ACNGT	3 cut(s)	325, 673, 700
Bst6I	CTCTTC	1 cut(s)	816
BstACI	GRCGYC	2 cut(s)	59, 360
BstDEI	CTNAG	2 cut(s)	236, 556
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	429
BstHHI	GCGC	2 cut(s)	53, 570
BstKTI	GATC	2 cut(s)	531, 751
BstMAI	GTCTC	5 cut(s)	50, 116, 236, 367, 759
BstMBI	GATC	2 cut(s)	528, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 432, 742
BstNI	CCWGG	4 cut(s)	171, 408, 448, 691
BstSCI	CCNGG	6 cut(s)	83, 169, 207, 406, 446, 689
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	127, 438, 804
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	669, 696
CfoI	GCGC	2 cut(s)	53, 570
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	173, 410
CseI	GACGC	2 cut(s)	187, 349
Csp6I	GTAC	2 cut(s)	307, 694
CviAII	CATG	2 cut(s)	131, 146
CviJI	RGCY	9 cut(s)	26, 34, 140, 169, 435, 451, 626, 639, 826
CviKI_1	RGCY	9 cut(s)	26, 34, 140, 169, 435, 451, 626, 639, 826
CviQI	GTAC	2 cut(s)	307, 694
DdeI	CTNAG	2 cut(s)	236, 556
DpnI	GATC	2 cut(s)	530, 750
DpnII	GATC	2 cut(s)	528, 748
EaeI	YGGCCR	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco24I	GRGCYC	1 cut(s)	437
Eco31I	GGTCTC	2 cut(s)	116, 759
Eco47I	GGWCC	2 cut(s)	173, 410
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	498
EcoRII	CCWGG	4 cut(s)	169, 406, 446, 689
EcoT38I	GRGCYC	1 cut(s)	437
Esp3I	CGTCTC	2 cut(s)	50, 367
FaeI	CATG	2 cut(s)	134, 149
FatI	CATG	2 cut(s)	130, 145
FauNDI	CATATG	1 cut(s)	543
Fnu4HI	GCNGC	4 cut(s)	141, 427, 452, 793
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	4 cut(s)	141, 427, 452, 793
FspAI	RTGCGCAY	1 cut(s)	569
FspBI	CTAG	1 cut(s)	137
FspI	TGCGCA	2 cut(s)	52, 569
GlaI	GCGC	2 cut(s)	52, 569
GluI	GCNGC	4 cut(s)	141, 427, 452, 793
GsaI	CCCAGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	5 cut(s)	5, 84, 209, 376, 838
HgaI	GACGC	2 cut(s)	187, 349
HhaI	GCGC	2 cut(s)	53, 570
Hin1I	GRCGYC	2 cut(s)	59, 360
Hin1II	CATG	2 cut(s)	134, 149
Hin6I	GCGC	2 cut(s)	51, 568
HinP1I	GCGC	2 cut(s)	51, 568
HincII	GTYRAC	2 cut(s)	63, 676
HindII	GTYRAC	2 cut(s)	63, 676
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	5 cut(s)	5, 84, 209, 376, 838
HphI	GGTGA	2 cut(s)	281, 533
Hpy166II	GTNNAC	5 cut(s)	63, 282, 470, 676, 696
Hpy188I	TCNGA	3 cut(s)	330, 579, 636
Hpy188III	TCNNGA	7 cut(s)	20, 185, 221, 376, 461, 643, 838
Hpy8I	GTNNAC	5 cut(s)	63, 282, 470, 676, 696
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	3 cut(s)	325, 673, 700
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	339, 470, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 432, 742
HpyF3I	CTNAG	2 cut(s)	236, 556
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	2 cut(s)	59, 360
Hsp92II	CATG	2 cut(s)	134, 149
HspAI	GCGC	2 cut(s)	51, 568
Kpn2I	TCCGGA	2 cut(s)	375, 837
Kzo9I	GATC	2 cut(s)	528, 748
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	2 cut(s)	31, 378
Lsp1109I	GCAGC	3 cut(s)	127, 438, 804
LweI	GCATC	2 cut(s)	178, 662
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	59
MalI	GATC	2 cut(s)	530, 750
MboI	GATC	2 cut(s)	528, 748
MboII	GAAGA	2 cut(s)	119, 833
MhlI	GDGCHC	3 cut(s)	437, 472, 483
MluCI	AATT	7 cut(s)	69, 88, 703, 731, 740, 833, 847
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	8 cut(s)	16, 33, 215, 424, 468, 494, 588, 650
MroI	TCCGGA	2 cut(s)	375, 837
MseI	TTAA	2 cut(s)	485, 603
MspI	CCGG	5 cut(s)	5, 84, 209, 376, 838
MspR9I	CCNGG	6 cut(s)	85, 171, 209, 408, 448, 691
MvaI	CCWGG	4 cut(s)	171, 408, 448, 691
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	23, 432, 742
NciI	CCSGG	2 cut(s)	85, 209
NdeI	CATATG	1 cut(s)	543
NdeII	GATC	2 cut(s)	528, 748
NlaIII	CATG	2 cut(s)	134, 149
NlaIV	GGNNCC	1 cut(s)	27
NsbI	TGCGCA	2 cut(s)	52, 569
PciSI	GCTCTTC	1 cut(s)	816
PflMI	CCANNNNNTGG	1 cut(s)	36
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	142, 428, 453, 794
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PsiI	TTATAA	1 cut(s)	383
Psp6I	CCWGG	4 cut(s)	169, 406, 446, 689
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	4 cut(s)	169, 406, 446, 689
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	173, 410
RsaI	GTAC	2 cut(s)	308, 695
RsaNI	GTAC	2 cut(s)	307, 694
SapI	GCTCTTC	1 cut(s)	816
SaqAI	TTAA	2 cut(s)	485, 603
SatI	GCNGC	4 cut(s)	141, 427, 452, 793
Sau3AI	GATC	2 cut(s)	528, 748
Sau96I	GGNCC	2 cut(s)	173, 410
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	6 cut(s)	85, 171, 209, 408, 448, 691
SduI	GDGCHC	3 cut(s)	437, 472, 483
SetI	ASST	7 cut(s)	36, 62, 142, 389, 557, 599, 828
SfaNI	GCATC	2 cut(s)	178, 662
SinI	GGWCC	2 cut(s)	173, 410
Sse9I	AATT	7 cut(s)	69, 88, 703, 731, 740, 833, 847
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	6 cut(s)	83, 169, 207, 406, 446, 689
TaaI	ACNGT	3 cut(s)	325, 673, 700
TaiI	ACGT	1 cut(s)	62
TaqII	GACCGA	2 cut(s)	190, 741
TasI	AATT	7 cut(s)	69, 88, 703, 731, 740, 833, 847
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	429
Tru1I	TTAA	2 cut(s)	485, 603
Tru9I	TTAA	2 cut(s)	485, 603
TscAI	CASTG	2 cut(s)	676, 703
TseI	GCWGC	3 cut(s)	140, 451, 792
TspDTI	ATGAA	3 cut(s)	119, 143, 525
TspRI	CASTG	2 cut(s)	676, 703
Van91I	CCANNNNNTGG	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	468
VpaK11BI	GGWCC	2 cut(s)	173, 410
XapI	RAATTY	4 cut(s)	69, 703, 833, 847
XspI	CTAG	1 cut(s)	137
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.