Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Reverse (-)

12909551 .. 12912416

Gene Structure 2866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGATGGGGTGGGTGAAAGTTCGACTCAAAATGAGGTAGAAGAGAAGCCTGTGATTGTTAGAGTTAAGCGAAAAGTTGGACAGTCTCTGCTCGATGCTTTCTGGTTGGAGATAAATGAAAGACCACTCAAACGGCCGACTCTGGATTTCTCAAAGCTATCTATTTCAGATTCAGGGGAGAGAGGTCCTTCTGTGGCAGAGGATGTGAAACCGAAGAAGGTGCTAGTGCGGCATTTGGAGACAGTTACGGACTCTGAAACCACAGCTGATATTATCCACTCTTTCTTTGAGTCTGATCATAATGAGAAAAGTTGCAGTAAAGGAAAGTTTGAGGAGAGGAAAATTGCTTTCAAGAAAGACAATAGAAAGGAACAGCGCCTGACCAAATCTGTACAAAAGCAACAGATTGCTTCAGAGAATGCTCGGTTTGAGCAAATATGGCGGAGTAGGAAGGGAAACAAGGAAGGCATCCATGAGAAGTGTCATTTCTTTGACGTTATTCGTGTTGATACTGAAGAAAGACGAGACAATGCACAAGAGTTTACATCCCTGGAGGACCAGAAAATGCTCGCTAGTTTCTTGCCTCTCCTTAGAGAATGTATTCCAACAGCAGCTGAAGAGATTGAAGCTGATATACAATCTAGTCACACCGAAGAATACGTTTATGATTATTATGCTGTGAACGAAGAGATGGATATCAGCGAAGATAGTTCCAAGAATCAGTTTCCTCTTGTCATAGTAGAGGATGAAGAAGAATTCTGTGATGGATCTGATGAATCAGACTACGACTCTGAAGATTCAAACGCTGAAGATCATCCAAAGACTGATTACCCAGAGGAGGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGAATCAGAAGAAGAAAAGAGTGAAGCCTCTGATGAATCAGACGACGAGGAGACTTCAAAACGACATGTGAGAAGTGTCCTTGGAGATGACGAGTTTGATGATTACGCAGAGGATGTGTATGGTTACAGCGAGAGCGATGAGGAGTTTGAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

346

Amino Acids

40.08

Weight (kDa)

4.27

Isoelectric Point (pI)

69.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iwr1	PF08574	218 - 281	1.6e-08	Transcription factor Iwr1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	229, 442
AclWI	GGATC	1 cut(s)	775
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	755
AcuI	CTGAAG	5 cut(s)	396, 534, 636, 813, 828
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	838
AflIII	ACRYGT	1 cut(s)	949
AgsI	TTSAA	4 cut(s)	352, 626, 801, 942
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	4 cut(s)	157, 266, 614, 629
AluI	AGCT	4 cut(s)	157, 266, 614, 629
Alw26I	GTCTC	4 cut(s)	90, 233, 519, 929
AlwI	GGATC	1 cut(s)	775
AlwNI	CAGNNNCTG	3 cut(s)	88, 379, 614
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	1 cut(s)	755
Asp700I	GAANNNNTTC	1 cut(s)	600
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	185, 556
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	185, 556
BarI	GAAGNNNNNNTAC	2 cut(s)	618, 650
BbvI	GCAGC	1 cut(s)	623
BccI	CCATC	2 cut(s)	685, 758
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	1 cut(s)	551
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	4 cut(s)	90, 233, 519, 929
BfaI	CTAG	3 cut(s)	224, 573, 642
BfoI	RGCGCY	1 cut(s)	379
BisI	GCNGC	2 cut(s)	230, 612
BlsI	GCNGC	2 cut(s)	231, 613
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	2 cut(s)	185, 556
BmgT120I	GGNCC	2 cut(s)	185, 556
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	85, 477
BpmI	CTGGAG	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	695
BsaJI	CCNNGG	2 cut(s)	549, 964
BsaXI	ACNNNNNCTCC	1 cut(s)	1019
Bsc4I	CCNNNNNNNGG	1 cut(s)	838
Bse8I	GATNNNNATC	1 cut(s)	695
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	2 cut(s)	549, 964
BseGI	GGATG	7 cut(s)	10, 208, 468, 545, 751, 814, 1003
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	1 cut(s)	838
BseRI	GAGGAG	4 cut(s)	347, 851, 947, 1040
BseX3I	CGGCCG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	623
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	136
BsiEI	CGRYCG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	838
BsmAI	GTCTC	4 cut(s)	90, 233, 519, 929
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	136
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	295, 767, 811
BspACI	CCGC	2 cut(s)	229, 442
BspANI	GGCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	775
BsrGI	TGTACA	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	549, 964
BssMI	GATC	3 cut(s)	295, 767, 811
BssT1I	CCWWGG	1 cut(s)	964
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	84, 244
Bst6I	CTCTTC	3 cut(s)	36, 612, 681
BstAUI	TGTACA	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	2 cut(s)	590, 1038
BstF5I	GGATG	7 cut(s)	10, 208, 468, 545, 751, 814, 1003
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	3 cut(s)	298, 770, 814
BstMAI	GTCTC	4 cut(s)	90, 233, 519, 929
BstMBI	GATC	3 cut(s)	295, 767, 811
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 439
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	1 cut(s)	953
BstSCI	CCNGG	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	623
BstX2I	RGATCY	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	767
BstZI	CGGCCG	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	1035
BtsCI	GGATG	7 cut(s)	10, 208, 468, 545, 751, 814, 1003
Cac8I	GCNNGC	1 cut(s)	570
CaiI	CAGNNNCTG	3 cut(s)	88, 379, 614
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	2 cut(s)	185, 556
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	2 cut(s)	473, 950
CviJI	RGCY	7 cut(s)	49, 136, 157, 266, 614, 629, 911
CviKI_1	RGCY	7 cut(s)	49, 136, 157, 266, 614, 629, 911
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	2 cut(s)	590, 1038
DpnI	GATC	3 cut(s)	297, 769, 813
DpnII	GATC	3 cut(s)	295, 767, 811
EaeI	YGGCCR	1 cut(s)	134
EagI	CGGCCG	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	36, 612, 681
EarI	CTCTTC	3 cut(s)	36, 612, 681
EciI	GGCGGA	1 cut(s)	457
EclXI	CGGCCG	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	964
Eco32I	GATATC	1 cut(s)	697
Eco47I	GGWCC	2 cut(s)	185, 556
Eco52I	CGGCCG	1 cut(s)	134
Eco57I	CTGAAG	5 cut(s)	396, 534, 636, 813, 828
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	549
EcoRV	GATATC	1 cut(s)	697
EcoT14I	CCWWGG	1 cut(s)	964
ErhI	CCWWGG	1 cut(s)	964
FaeI	CATG	2 cut(s)	476, 953
FaiI	YATR	9 cut(s)	300, 439, 474, 635, 666, 675, 737, 951, 1005
FatI	CATG	2 cut(s)	472, 949
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	230, 612
FokI	GGATG	7 cut(s)	17, 215, 455, 532, 758, 801, 1010
Fsp4HI	GCNGC	2 cut(s)	230, 612
FspBI	CTAG	3 cut(s)	224, 573, 642
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	230, 612
GsuI	CTGGAG	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	476, 953
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	543, 682
Hpy188III	TCNNGA	2 cut(s)	143, 352
Hpy8I	GTNNAC	2 cut(s)	543, 682
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	4 cut(s)	198, 211, 445, 458
HpyCH4III	ACNGT	2 cut(s)	84, 244
HpyCH4IV	ACGT	2 cut(s)	495, 660
HpyCH4V	TGCA	2 cut(s)	315, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 439
HpyF3I	CTNAG	2 cut(s)	590, 1038
HpySE526I	ACGT	2 cut(s)	495, 660
Hsp92II	CATG	2 cut(s)	476, 953
HspAI	GCGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	295, 767, 811
LpnPI	CCDG	9 cut(s)	63, 88, 128, 159, 392, 536, 563, 572, 846
Lsp1109I	GCAGC	1 cut(s)	623
LweI	GCATC	2 cut(s)	85, 477
MaeI	CTAG	3 cut(s)	224, 573, 642
MaeII	ACGT	2 cut(s)	495, 660
MaeIII	GTNAC	3 cut(s)	244, 644, 1007
MalI	GATC	3 cut(s)	297, 769, 813
MboI	GATC	3 cut(s)	295, 767, 811
MflI	RGATCY	1 cut(s)	767
MluCI	AATT	2 cut(s)	342, 755
MlyI	GAGTC	5 cut(s)	19, 133, 245, 299, 782
MmeI	TCCRAC	3 cut(s)	58, 87, 629
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	1 cut(s)	66
MspA1I	CMGCKG	2 cut(s)	266, 614
MspR9I	CCNGG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	2 cut(s)	229, 439
NdeII	GATC	3 cut(s)	295, 767, 811
NlaIII	CATG	2 cut(s)	476, 953
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	1 cut(s)	953
PciI	ACATGT	1 cut(s)	949
PctI	GAATGC	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	6 cut(s)	170, 718, 776, 797, 887, 920
PkrI	GCNGC	2 cut(s)	231, 613
PleI	GAGTC	5 cut(s)	19, 133, 245, 298, 782
PpsI	GAGTC	5 cut(s)	19, 133, 245, 298, 782
PpuMI	RGGWCCY	1 cut(s)	185
PscI	ACATGT	1 cut(s)	949
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspPI	GGNCC	2 cut(s)	185, 556
PspPPI	RGGWCCY	1 cut(s)	185
PstNI	CAGNNNCTG	3 cut(s)	88, 379, 614
PsuI	RGATCY	1 cut(s)	767
PvuII	CAGCTG	2 cut(s)	266, 614
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	230, 612
Sau3AI	GATC	3 cut(s)	295, 767, 811
Sau96I	GGNCC	2 cut(s)	185, 556
SchI	GAGTC	5 cut(s)	19, 133, 245, 299, 782
ScrFI	CCNGG	1 cut(s)	551
SetI	ASST	9 cut(s)	39, 159, 187, 222, 268, 498, 616, 631, 663
SfaNI	GCATC	2 cut(s)	85, 477
SinI	GGWCC	2 cut(s)	185, 556
Sse9I	AATT	2 cut(s)	342, 755
SsiI	CCGC	2 cut(s)	229, 442
SspMI	CTAG	3 cut(s)	224, 573, 642
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	964
TaaI	ACNGT	2 cut(s)	84, 244
TaiI	ACGT	2 cut(s)	498, 663
TaqI	TCGA	2 cut(s)	23, 93
TasI	AATT	2 cut(s)	342, 755
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	6 cut(s)	170, 718, 776, 797, 887, 920
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	5 cut(s)	132, 762, 789, 900, 933
TspGWI	ACGGA	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	185, 556
XapI	RAATTY	1 cut(s)	755
XceI	RCATGY	1 cut(s)	953
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	3 cut(s)	224, 573, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.