Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Forward (+)

3287961 .. 3291247

Gene Structure 3287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G045300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCCGTGGTCGGCGAAAGCTCTTCAGCTTTGGCTAAGTCTCCGGAAGACAAGCCGGTGATCGTTAGGGTTAAACGCAAAGCATTACAGTCTCCACTTGACGCTTTCTGGCTGGAAATCAATGAGAGGCCGCAGAAGCGTCCGTTACTGGATTTCGAGAACCTTTCAATGTCTGATTCAGCTGCAAAGGCAGAGGAATTGAAGACCAAGAAGGTTTTCGTGCAGCATGTGGAGACAGTAAGCAGCTTTCACACCACTGTTGATGTTGTGAAATCGTTCGTGGACCTAAATTCCGATGATGTGTGCGATCGTAAAACAAGGAATGAAGAACGCAAAGATACTTTTAAAAAGGAGAATCAGAAACAAGATCAGATTTTGTCTAAAGCTAGACAGAAACAGGAGGTTGTCGCGAAAAATGCACGTTTCGAACAAATATGGAGGAGCAGAAAGGGAAACAAAGAAACATCACATGAGAAATTACATGAAATGTGTCATTTCTATGATGTTGTTCGTGTTGATGTTGAGGAAAGATCTAATGAGTTGCAACAGGAGGATGAGATATCTTTGGAGGACCAGAGGATGTTAAATAGTTACTTGCCTCTACTGAGAGAGTTCATTCCAAGTGCTGCTTCGGAGATTGAATCAGATTTATCTGCTAACAGCTCCAAACAAGCATCCGAAGATGGGTATGTATATGACTTGTATGCTGTGAAGGAGGAAATGGATATAGATACTGAAAATTCTTCAAAGTCATTTCCCTTGGTACAAGTTGATGACGAGGATTTATATGACGGGCCTGATGAATCAGAATATGATACTGATGATTCTAATGCTGAAAACAACCCGCTCAATGATTATCCGGAAGAGATATCTGAAGAGGAATCAGAGAGTGACACCTCCGATAATGAATCAGAAGAAAATGAGAGTTCCAGTGAAAAATCTTCAGAACCGAAGGGTTTAGAAGACAATGACTTTTTAGAAGATGATATGTATGATGGGAATGATGATGGTGATGACTTTGATTATGATGTTGATCAGAGTGATGATGGCGAAGATCGGAGATGGTCTTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

359

Amino Acids

41.25

Weight (kDa)

4.29

Isoelectric Point (pI)

66.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	847
AccII	CGCG	1 cut(s)	410
AccIII	TCCGGA	2 cut(s)	43, 859
AciI	CCGC	2 cut(s)	131, 845
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	289, 739
AcuI	CTGAAG	3 cut(s)	9, 894, 927
AfaI	GTAC	1 cut(s)	765
AfiI	CCNNNNNNNGG	1 cut(s)	684
AgsI	TTSAA	4 cut(s)	168, 202, 641, 747
AjuI	GAANNNNNNNTTGG	4 cut(s)	200, 232, 613, 645
AluBI	AGCT	6 cut(s)	21, 29, 182, 246, 386, 663
AluI	AGCT	6 cut(s)	21, 29, 182, 246, 386, 663
Alw26I	GTCTC	3 cut(s)	45, 96, 227
Aor13HI	TCCGGA	2 cut(s)	43, 859
AoxI	GGCC	3 cut(s)	3, 128, 794
ApeKI	GCWGC	4 cut(s)	182, 223, 243, 626
ApoI	RAATTY	2 cut(s)	289, 739
Asp700I	GAANNNNTTC	2 cut(s)	215, 275
AspS9I	GGNCC	3 cut(s)	283, 571, 794
AsuHPI	GGTGA	2 cut(s)	70, 1022
AsuII	TTCGAA	1 cut(s)	426
AvaII	GGWCC	2 cut(s)	283, 571
BbsI	GAAGAC	3 cut(s)	54, 209, 969
BbvI	GCAGC	4 cut(s)	169, 235, 255, 613
BccI	CCATC	5 cut(s)	677, 989, 1001, 1040, 1056
BclI	TGATCA	1 cut(s)	1033
BcoDI	GTCTC	3 cut(s)	45, 96, 227
BfaI	CTAG	1 cut(s)	387
BglII	AGATCT	1 cut(s)	530
BisI	GCNGC	5 cut(s)	131, 183, 224, 244, 627
BlsI	GCNGC	5 cut(s)	132, 184, 225, 245, 628
Bme18I	GGWCC	2 cut(s)	283, 571
BmgT120I	GGNCC	3 cut(s)	283, 571, 794
BmsI	GCATC	1 cut(s)	683
BpiI	GAAGAC	3 cut(s)	54, 209, 969
Bpu14I	TTCGAA	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	1032
BsaJI	CCNNGG	2 cut(s)	6, 759
BsaWI	WCCGGW	2 cut(s)	43, 859
Bsc4I	CCNNNNNNNGG	1 cut(s)	684
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	153, 930
Bse8I	GATNNNNATC	1 cut(s)	1032
BseAI	TCCGGA	2 cut(s)	43, 859
BseDI	CCNNGG	2 cut(s)	6, 759
BseGI	GGATG	3 cut(s)	559, 585, 674
BseJI	GATNNNNATC	1 cut(s)	1032
BseLI	CCNNNNNNNGG	1 cut(s)	684
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	2 cut(s)	153, 930
BseRI	GAGGAG	1 cut(s)	454
BseXI	GCAGC	4 cut(s)	169, 235, 255, 613
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	410
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	3 cut(s)	5, 130, 796
BsiEI	CGRYCG	1 cut(s)	310
BsiSI	CCGG	3 cut(s)	44, 56, 860
BslI	CCNNNNNNNGG	1 cut(s)	684
BsmAI	GTCTC	3 cut(s)	45, 96, 227
BsnI	GGCC	3 cut(s)	5, 130, 796
Bsp119I	TTCGAA	1 cut(s)	426
Bsp13I	TCCGGA	2 cut(s)	43, 859
Bsp143I	GATC	6 cut(s)	60, 307, 367, 530, 1033, 1054
Bsp68I	TCGCGA	1 cut(s)	410
BspACI	CCGC	2 cut(s)	131, 845
BspANI	GGCC	3 cut(s)	5, 130, 796
BspCNI	CTCAG	1 cut(s)	597
BspEI	TCCGGA	2 cut(s)	43, 859
BspFNI	CGCG	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	426
BsrBI	CCGCTC	1 cut(s)	847
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	153, 930
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	6, 759
BssMI	GATC	6 cut(s)	60, 307, 367, 530, 1033, 1054
BssT1I	CCWWGG	1 cut(s)	759
Bst4CI	ACNGT	3 cut(s)	90, 238, 259
Bst6I	CTCTTC	3 cut(s)	28, 858, 870
BstBI	TTCGAA	1 cut(s)	426
BstDEI	CTNAG	2 cut(s)	36, 605
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	559, 585, 674
BstFNI	CGCG	1 cut(s)	410
BstKTI	GATC	6 cut(s)	63, 310, 370, 533, 1036, 1057
BstMAI	GTCTC	3 cut(s)	45, 96, 227
BstMBI	GATC	6 cut(s)	60, 307, 367, 530, 1033, 1054
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 188, 416
BstNSI	RCATGY	1 cut(s)	230
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	4 cut(s)	169, 235, 255, 613
BstV2I	GAAGAC	3 cut(s)	54, 209, 969
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	5, 130, 796
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	559, 585, 674
BtsIMutI	CAGTG	2 cut(s)	255, 937
BtuMI	TCGCGA	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	283, 571, 794
CseI	GACGC	2 cut(s)	110, 128
Csp6I	GTAC	1 cut(s)	764
CviAII	CATG	3 cut(s)	227, 470, 482
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	2 cut(s)	36, 605
DpnI	GATC	6 cut(s)	62, 309, 369, 532, 1035, 1056
DpnII	GATC	6 cut(s)	60, 307, 367, 530, 1033, 1054
DraI	TTTAAA	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	28, 858, 870
EarI	CTCTTC	3 cut(s)	28, 858, 870
Eco130I	CCWWGG	1 cut(s)	759
Eco32I	GATATC	2 cut(s)	561, 870
Eco47I	GGWCC	2 cut(s)	283, 571
Eco57I	CTGAAG	3 cut(s)	9, 894, 927
EcoRV	GATATC	2 cut(s)	561, 870
EcoT14I	CCWWGG	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	3 cut(s)	230, 473, 485
FalI	AAGNNNNNCTT	2 cut(s)	613, 645
FatI	CATG	3 cut(s)	226, 469, 481
FauI	CCCGC	1 cut(s)	852
FbaI	TGATCA	1 cut(s)	1033
Fnu4HI	GCNGC	5 cut(s)	131, 183, 224, 244, 627
FokI	GGATG	3 cut(s)	566, 592, 661
Fsp4HI	GCNGC	5 cut(s)	131, 183, 224, 244, 627
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	5 cut(s)	131, 183, 224, 244, 627
HaeIII	GGCC	3 cut(s)	5, 130, 796
HapII	CCGG	3 cut(s)	44, 56, 860
HgaI	GACGC	2 cut(s)	110, 128
Hin1II	CATG	3 cut(s)	230, 473, 485
HinfI	GANTC	7 cut(s)	176, 355, 641, 803, 824, 881, 908
HpaII	CCGG	3 cut(s)	44, 56, 860
HphI	GGTGA	2 cut(s)	70, 1022
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188III	TCNNGA	4 cut(s)	44, 157, 409, 860
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	205, 706, 946
HpyCH4III	ACNGT	3 cut(s)	90, 238, 259
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	4 cut(s)	185, 223, 419, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 188, 416
HpyF3I	CTNAG	2 cut(s)	36, 605
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	230, 473, 485
Kpn2I	TCCGGA	2 cut(s)	43, 859
Ksp22I	TGATCA	1 cut(s)	1033
Kzo9I	GATC	6 cut(s)	60, 307, 367, 530, 1033, 1054
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	441, 668
Lsp1109I	GCAGC	4 cut(s)	169, 235, 255, 613
LweI	GCATC	1 cut(s)	683
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	3 cut(s)	144, 590, 890
MalI	GATC	6 cut(s)	62, 309, 369, 532, 1035, 1056
MbiI	CCGCTC	1 cut(s)	847
MboI	GATC	6 cut(s)	60, 307, 367, 530, 1033, 1054
MflI	RGATCY	1 cut(s)	530
MluCI	AATT	4 cut(s)	197, 289, 476, 739
MroI	TCCGGA	2 cut(s)	43, 859
MroXI	GAANNNNTTC	2 cut(s)	215, 275
MseI	TTAA	3 cut(s)	72, 345, 584
MslI	CAYNNNNRTG	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	3 cut(s)	44, 56, 860
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	3 cut(s)	136, 188, 416
NdeII	GATC	6 cut(s)	60, 307, 367, 530, 1033, 1054
NlaIII	CATG	3 cut(s)	230, 473, 485
NmuCI	GTSAC	1 cut(s)	890
NruI	TCGCGA	1 cut(s)	410
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	28
PdmI	GAANNNNTTC	2 cut(s)	215, 275
PfeI	GAWTC	7 cut(s)	176, 355, 641, 803, 824, 881, 908
PkrI	GCNGC	5 cut(s)	132, 184, 225, 245, 628
Ple19I	CGATCG	1 cut(s)	310
PspPI	GGNCC	3 cut(s)	283, 571, 794
PsuI	RGATCY	1 cut(s)	530
PvuI	CGATCG	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	182
RruI	TCGCGA	1 cut(s)	410
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
RseI	CAYNNNNRTG	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	3 cut(s)	72, 345, 584
SatI	GCNGC	5 cut(s)	131, 183, 224, 244, 627
Sau3AI	GATC	6 cut(s)	60, 307, 367, 530, 1033, 1054
Sau96I	GGNCC	3 cut(s)	283, 571, 794
SfaNI	GCATC	1 cut(s)	683
SfuI	TTCGAA	1 cut(s)	426
SinI	GGWCC	2 cut(s)	283, 571
SmiMI	CAYNNNNRTG	1 cut(s)	498
Sse9I	AATT	4 cut(s)	197, 289, 476, 739
SsiI	CCGC	2 cut(s)	131, 845
SspMI	CTAG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	3 cut(s)	90, 238, 259
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	156, 426
TasI	AATT	4 cut(s)	197, 289, 476, 739
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	7 cut(s)	176, 355, 641, 803, 824, 881, 908
Tru1I	TTAA	3 cut(s)	72, 345, 584
Tru9I	TTAA	3 cut(s)	72, 345, 584
TscAI	CASTG	2 cut(s)	262, 937
TseFI	GTSAC	1 cut(s)	890
TseI	GCWGC	4 cut(s)	182, 223, 243, 626
Tsp45I	GTSAC	1 cut(s)	890
TspDTI	ATGAA	5 cut(s)	339, 498, 604, 816, 921
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	262, 937
VpaK11BI	GGWCC	2 cut(s)	283, 571
XapI	RAATTY	2 cut(s)	289, 739
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	2 cut(s)	215, 275
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.