Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Reverse (-)

47266048 .. 47269566

Gene Structure 3519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCGGTGGTGGGCGAAAGCTCTTCGGCTCCGCCGGAACAGAAGCCGGTGATCGTTAGGGTCAAGCGCAAAGCCAACCAGTCTCCAATCGACGCTTTCTGGCTTGAAATCAATGAGAGGCCACCCAAGCGTCCGCTTTTGGATTTGGCCAAACTTTCACTCTCTGATTCATCTCCAAAAGCAGCAGCAGAAGAATTGAAGGCGAAGAAGGTTTTCGTGCAGCATGTAGAGACTGTAAGCAGCTTTGACACCACTATTGACATTGTCAAATCATTTGTGGACCCTACTACGGATCAAGTGTCTGAAAGTAAAACAAAGAGTGAAGAACGGAGACACTCTTTAAAAAAGGACAATAAACAAGAGCAGATTTTGTCTAAAGCCAGACAGACGCAAGAGGTTGTAGCAAAAAATGCCCGTTTTGAACAAATATGGAGGAGCCGAAAGGGAAAGACAGAAGAATCCGATAAATTACAGGAAATGTGTCATTTCTATGATGTTCTTCGTGTTGATGCCGATGAAAGATCTAATGAACTGAAACAACAGGAAGAGTTATCTTTGGAGGACCAGAGGATTTTGCAGAGTTACTTGCCTCTACTCAGAGAATTCATCCCAAGTGCGGCTTTAGAGGTTGAATCAGATTTGCATGCTCAAAAACAAGAATCTGAAGATGAGTATGTATATGATGTCTATGCTGTGAATGATGAAATGGATGTAGCGGATGAAGATTCTTCCCACCCATTTCCTTTAGTGCAAGTTGATGATGAGGATTTCTATGATGTGCCTGATGAATCAGAACATGACACTGAGGATTCAAATGATGAAAACAATCCAAATTTTGATTATCCGGATGAGGAATCTGAAGATGAAGAAGAGGAATCGGACGGTGAAGCATCTGATAATGAATCAAAAGATGAGAGTGCCAGTGACAGATCCTTCGAATCCAAGGATGATGAAAACAATCCAAATTTTGATTGTCCGGATGAGGAATCTGAAGATGAAGAAGAGGAATCGGACGGTGAAGCATCTGATAATGAATCAAAAGATGAGAGTGCCAGTGACAGATCCTTCGAATCCAAGGATTTAGAGGAACATGTAATTTCAGGAGATGATCTTTCTTTGGATTATGATGATGGTGGTGATGATGGGGATGATGGTGAAAACTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

389

Amino Acids

44.35

Weight (kDa)

4.13

Isoelectric Point (pI)

69.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	844, 976
AciI	CCGC	5 cut(s)	5, 32, 134, 617, 716
AclWI	GGATC	3 cut(s)	300, 924, 1056
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	602, 832, 964
AcuI	CTGAAG	3 cut(s)	684, 879, 1011
AfiI	CCNNNNNNNGG	2 cut(s)	289, 616
AflIII	ACRYGT	1 cut(s)	1090
AgsI	TTSAA	5 cut(s)	107, 199, 422, 632, 813
AluBI	AGCT	2 cut(s)	21, 243
AluI	AGCT	2 cut(s)	21, 243
Alw26I	GTCTC	3 cut(s)	87, 224, 325
AlwI	GGATC	3 cut(s)	300, 924, 1056
Aor13HI	TCCGGA	2 cut(s)	844, 976
AoxI	GGCC	2 cut(s)	119, 147
ApeKI	GCWGC	4 cut(s)	182, 185, 220, 240
ApoI	RAATTY	3 cut(s)	602, 832, 964
ArsI	GACNNNNNNTTYG	4 cut(s)	917, 949, 1049, 1081
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	280, 562
AsuHPI	GGTGA	5 cut(s)	61, 896, 1028, 1148, 1166
AsuII	TTCGAA	2 cut(s)	936, 1068
AvaII	GGWCC	2 cut(s)	280, 562
BalI	TGGCCA	1 cut(s)	149
BbvI	GCAGC	4 cut(s)	194, 197, 232, 252
BccI	CCATC	3 cut(s)	1124, 1136, 1145
BcoDI	GTCTC	3 cut(s)	87, 224, 325
BglII	AGATCT	1 cut(s)	521
BisI	GCNGC	5 cut(s)	183, 186, 221, 241, 618
BlsI	GCNGC	5 cut(s)	184, 187, 222, 242, 619
Bme18I	GGWCC	2 cut(s)	280, 562
BmgT120I	GGNCC	2 cut(s)	280, 562
BmiI	GGNNCC	3 cut(s)	30, 282, 437
BmsI	GCATC	3 cut(s)	499, 899, 1031
Bpu14I	TTCGAA	2 cut(s)	936, 1068
BsaJI	CCNNGG	2 cut(s)	942, 1074
BsaWI	WCCGGW	2 cut(s)	844, 976
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 616
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	4 cut(s)	79, 921, 1053, 1166
BseAI	TCCGGA	2 cut(s)	844, 976
BseDI	CCNNGG	2 cut(s)	942, 1074
BseGI	GGATG	8 cut(s)	606, 715, 724, 853, 952, 985, 1153, 1170
BseLI	CCNNNNNNNGG	2 cut(s)	289, 616
BseMII	CTCAG	2 cut(s)	610, 795
BseNI	ACTGG	4 cut(s)	79, 921, 1053, 1166
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	4 cut(s)	194, 197, 232, 252
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	121, 149
BsiSI	CCGG	4 cut(s)	35, 47, 845, 977
BslI	CCNNNNNNNGG	2 cut(s)	289, 616
BsmAI	GTCTC	3 cut(s)	87, 224, 325
BsnI	GGCC	2 cut(s)	121, 149
Bsp119I	TTCGAA	2 cut(s)	936, 1068
Bsp13I	TCCGGA	2 cut(s)	844, 976
Bsp143I	GATC	6 cut(s)	51, 292, 521, 929, 1061, 1108
BspACI	CCGC	5 cut(s)	5, 32, 134, 617, 716
BspANI	GGCC	2 cut(s)	121, 149
BspCNI	CTCAG	2 cut(s)	609, 796
BspEI	TCCGGA	2 cut(s)	844, 976
BspLI	GGNNCC	3 cut(s)	30, 282, 437
BspPI	GGATC	3 cut(s)	300, 924, 1056
BspQI	GCTCTTC	1 cut(s)	28
BspT104I	TTCGAA	2 cut(s)	936, 1068
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	4 cut(s)	79, 921, 1053, 1166
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	942, 1074
BssMI	GATC	6 cut(s)	51, 292, 521, 929, 1061, 1108
BssT1I	CCWWGG	2 cut(s)	942, 1074
Bst4CI	ACNGT	3 cut(s)	235, 884, 1016
Bst6I	CTCTTC	4 cut(s)	28, 540, 864, 996
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBI	TTCGAA	2 cut(s)	936, 1068
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	2 cut(s)	596, 804
BstF5I	GGATG	8 cut(s)	606, 715, 724, 853, 952, 985, 1153, 1170
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	6 cut(s)	54, 295, 524, 932, 1064, 1111
BstMAI	GTCTC	3 cut(s)	87, 224, 325
BstMBI	GATC	6 cut(s)	51, 292, 521, 929, 1061, 1108
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 410
BstNSI	RCATGY	3 cut(s)	227, 647, 1094
BstV1I	GCAGC	4 cut(s)	194, 197, 232, 252
BstX2I	RGATCY	3 cut(s)	521, 929, 1061
BstYI	RGATCY	3 cut(s)	521, 929, 1061
BsuRI	GGCC	2 cut(s)	121, 149
BtsCI	GGATG	8 cut(s)	606, 715, 724, 853, 952, 985, 1153, 1170
BtsIMutI	CAGTG	3 cut(s)	801, 928, 1060
Cac8I	GCNNGC	1 cut(s)	645
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	280, 562
CseI	GACGC	3 cut(s)	101, 119, 397
CviAII	CATG	4 cut(s)	224, 644, 797, 1091
DdeI	CTNAG	2 cut(s)	596, 804
DpnI	GATC	6 cut(s)	53, 294, 523, 931, 1063, 1110
DpnII	GATC	6 cut(s)	51, 292, 521, 929, 1061, 1108
DraI	TTTAAA	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	4 cut(s)	28, 540, 864, 996
EarI	CTCTTC	4 cut(s)	28, 540, 864, 996
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	942, 1074
Eco47I	GGWCC	2 cut(s)	280, 562
Eco57I	CTGAAG	3 cut(s)	684, 879, 1011
EcoRI	GAATTC	1 cut(s)	602
EcoT14I	CCWWGG	2 cut(s)	942, 1074
ErhI	CCWWGG	2 cut(s)	942, 1074
FaeI	CATG	4 cut(s)	227, 647, 800, 1094
FalI	AAGNNNNNCTT	2 cut(s)	604, 636
FatI	CATG	4 cut(s)	223, 643, 796, 1090
Fnu4HI	GCNGC	5 cut(s)	183, 186, 221, 241, 618
FokI	GGATG	7 cut(s)	593, 722, 731, 860, 959, 992, 1160
Fsp4HI	GCNGC	5 cut(s)	183, 186, 221, 241, 618
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	5 cut(s)	183, 186, 221, 241, 618
HaeIII	GGCC	2 cut(s)	121, 149
HapII	CCGG	4 cut(s)	35, 47, 845, 977
HgaI	GACGC	3 cut(s)	101, 119, 397
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	227, 647, 800, 1094
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HpaII	CCGG	4 cut(s)	35, 47, 845, 977
HphI	GGTGA	5 cut(s)	61, 896, 1028, 1148, 1166
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188III	TCNNGA	3 cut(s)	845, 977, 1101
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	193, 202, 943, 1075
HpyCH4III	ACNGT	3 cut(s)	235, 884, 1016
HpyCH4V	TGCA	4 cut(s)	220, 577, 643, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 410
HpyF3I	CTNAG	2 cut(s)	596, 804
Hsp92II	CATG	4 cut(s)	227, 647, 800, 1094
HspAI	GCGC	1 cut(s)	67
Kpn2I	TCCGGA	2 cut(s)	844, 976
Kzo9I	GATC	6 cut(s)	51, 292, 521, 929, 1061, 1108
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	34, 435
Lsp1109I	GCAGC	4 cut(s)	194, 197, 232, 252
LweI	GCATC	3 cut(s)	499, 899, 1031
MaeIII	GTNAC	3 cut(s)	581, 923, 1055
MalI	GATC	6 cut(s)	53, 294, 523, 931, 1063, 1110
MboI	GATC	6 cut(s)	51, 292, 521, 929, 1061, 1108
MflI	RGATCY	3 cut(s)	521, 929, 1061
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	6 cut(s)	194, 467, 602, 832, 964, 1095
MluNI	TGGCCA	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	149
MroI	TCCGGA	2 cut(s)	844, 976
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	4 cut(s)	35, 47, 845, 977
MwoI	GCNNNNNNNGC	2 cut(s)	127, 410
NdeII	GATC	6 cut(s)	51, 292, 521, 929, 1061, 1108
NlaIII	CATG	4 cut(s)	227, 647, 800, 1094
NlaIV	GGNNCC	3 cut(s)	30, 282, 437
NmuCI	GTSAC	2 cut(s)	923, 1055
NspI	RCATGY	3 cut(s)	227, 647, 1094
NspV	TTCGAA	2 cut(s)	936, 1068
PaeI	GCATGC	1 cut(s)	647
PciI	ACATGT	1 cut(s)	1090
PciSI	GCTCTTC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	212
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	5 cut(s)	184, 187, 222, 242, 619
PscI	ACATGT	1 cut(s)	1090
PspN4I	GGNNCC	3 cut(s)	30, 282, 437
PspPI	GGNCC	2 cut(s)	280, 562
PsuI	RGATCY	3 cut(s)	521, 929, 1061
PsyI	GACNNNGTC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	5 cut(s)	183, 186, 221, 241, 618
Sau3AI	GATC	6 cut(s)	51, 292, 521, 929, 1061, 1108
Sau96I	GGNCC	2 cut(s)	280, 562
SetI	ASST	5 cut(s)	23, 213, 245, 399, 630
SfaNI	GCATC	3 cut(s)	499, 899, 1031
SfuI	TTCGAA	2 cut(s)	936, 1068
SinI	GGWCC	2 cut(s)	280, 562
SmiMI	CAYNNNNRTG	1 cut(s)	489
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	6 cut(s)	194, 467, 602, 832, 964, 1095
SsiI	CCGC	5 cut(s)	5, 32, 134, 617, 716
StyI	CCWWGG	2 cut(s)	942, 1074
TaaI	ACNGT	3 cut(s)	235, 884, 1016
TaqI	TCGA	3 cut(s)	90, 936, 1068
TasI	AATT	6 cut(s)	194, 467, 602, 832, 964, 1095
TauI	GCSGC	1 cut(s)	620
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	3 cut(s)	808, 928, 1060
TseFI	GTSAC	2 cut(s)	923, 1055
TseI	GCWGC	4 cut(s)	182, 185, 220, 240
Tsp45I	GTSAC	2 cut(s)	923, 1055
TspGWI	ACGGA	2 cut(s)	305, 343
TspRI	CASTG	3 cut(s)	808, 928, 1060
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	280, 562
XapI	RAATTY	3 cut(s)	602, 832, 964
XceI	RCATGY	3 cut(s)	227, 647, 1094
XmnI	GAANNNNTTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.