Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Reverse (-)

4696169 .. 4699983

Gene Structure 3815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1058300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCGGTGGTCGCCGAGAGCTCTTCTGCTTCGCCCAACCCGTCGGAGGACAAGCCGGTGATCGTTAGGGTTAAACGCAAGGCATTGCAGTCCCCACTCGACGCTTTCTGGCTGGAAATCAATGAGAGGCCGGCGAAGCGTCCGTTGTTGGATTTTGAGAAGCTGTCAATGTCGGATTCAGCTGGAAAGGGTAATGAGCCGTTGGTGGATTCAGCTGGAATGGAAGAACTGAAAACCAAGAAGGTTTTGGTACAGCATGTAGAGACAGTAAGCAGCTTCGGCACCAGTGTTGACGTTGTGAAATCATTTCTGGACCCTAATTCTGGTGATGTGCATGATCGTAAAACAAAGATTGGAGAACGCAAATACGCTCTGAGAAAGGAGAATAAACAAGATCTGATTTTGTCTAAAGCCAGACAGAGGAAGGAGGTTGTGGCAAAAAATGCGCGTTTTGAACAAATATGGAGGAGCAGAAGAGGAAACAAAGAAACATCACATGAGAATTTACGTGAAATTTGTCATGTCTATGATGTTATACGTGTTGACGTTGCTGAAAAACCCAAGGATGAAATATCTTTGGAGGACCAGAAGATTTTGAACAGTTACTTGCCTCTGCTGAGAGAGTTCATCCCATCTGCCGCTTCCGAGATCGAATCAGATTTATACACTAACAGTTCCAAACAAGATTCTGAAGATGAGTATGTTTATGACTTGTATGCTGTGAAGGAGGAAAGTGATATGGCTGTCGAATTATCTTCAAATCCATTCCCCTTGGTCCAAGTTGATGACGAGGATTTCTATGATGGGCCTGATGAATCCGAATATGAATCTGATGATTCAAATGCTGAAAACAACCCGCTTAATGATTATCCGGATGAGATCTCTGAAGAGGAAGAAGAGGAATCAGAGAACGAAGACTCCGATGATGAATCAGAAGAGAAGGAGAGTTCCAGCGACAAATCATCAGAACCCGAGGATTTAGAAGAAAATGACTTTCTTGAAGATGATATGTATGATGAAAACAATGACGGCCATGACTTTGATTACGATGTTGATCCAAGTGATGATGGTGAAGACCGCAATATGGTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

365

Amino Acids

41.54

Weight (kDa)

4.26

Isoelectric Point (pI)

65.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iwr1	PF08574	232 - 293	7.8e-06	Transcription factor Iwr1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	448
AccIII	TCCGGA	1 cut(s)	871
AciI	CCGC	4 cut(s)	5, 639, 857, 1078
AclWI	GGATC	1 cut(s)	1049
AcoI	YGGCCR	1 cut(s)	1030
AcsI	RAATTY	2 cut(s)	502, 513
AcuI	CTGAAG	2 cut(s)	711, 906
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	4 cut(s)	46, 323, 420, 1084
AflIII	ACRYGT	1 cut(s)	538
AgsI	TTSAA	5 cut(s)	455, 598, 759, 840, 1001
AloI	GAACNNNNNNTCC	2 cut(s)	902, 934
AluBI	AGCT	5 cut(s)	21, 163, 182, 215, 276
AluI	AGCT	5 cut(s)	21, 163, 182, 215, 276
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	1049
Ama87I	CYCGRG	1 cut(s)	971
Aor13HI	TCCGGA	1 cut(s)	871
AoxI	GGCC	3 cut(s)	128, 806, 1030
ApeKI	GCWGC	1 cut(s)	273
ApoI	RAATTY	2 cut(s)	502, 513
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	4 cut(s)	313, 583, 775, 806
AsuHPI	GGTGA	3 cut(s)	70, 338, 1082
AvaI	CYCGRG	1 cut(s)	971
AvaII	GGWCC	3 cut(s)	313, 583, 775
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	921, 1080
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	3 cut(s)	640, 797, 1061
BceAI	ACGGC	2 cut(s)	184, 1045
BcoDI	GTCTC	1 cut(s)	257
BglII	AGATCT	2 cut(s)	394, 879
BisI	GCNGC	2 cut(s)	274, 639
BlsI	GCNGC	2 cut(s)	275, 640
Bme18I	GGWCC	3 cut(s)	313, 583, 775
BmeT110I	CYCGRG	1 cut(s)	971
BmgT120I	GGNCC	4 cut(s)	313, 583, 775, 806
BmiI	GGNNCC	2 cut(s)	283, 315
BpiI	GAAGAC	2 cut(s)	921, 1080
BsaAI	YACGTR	2 cut(s)	509, 539
BsaBI	GATNNNNATC	1 cut(s)	1053
BsaJI	CCNNGG	3 cut(s)	561, 771, 972
BsaWI	WCCGGW	1 cut(s)	871
BsaXI	ACNNNNNCTCC	2 cut(s)	902, 932
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 323, 420, 1084
Bse118I	RCCGGY	2 cut(s)	55, 130
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	1053
BseAI	TCCGGA	1 cut(s)	871
BseDI	CCNNGG	3 cut(s)	561, 771, 972
BseGI	GGATG	3 cut(s)	571, 627, 880
BseJI	GATNNNNATC	1 cut(s)	1053
BseLI	CCNNNNNNNGG	4 cut(s)	46, 323, 420, 1084
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	365, 608
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	3 cut(s)	130, 808, 1032
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	971
BsiSI	CCGG	3 cut(s)	56, 131, 872
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	4 cut(s)	46, 323, 420, 1084
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	130, 808, 1032
BsoBI	CYCGRG	1 cut(s)	971
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp13I	TCCGGA	1 cut(s)	871
Bsp143I	GATC	6 cut(s)	60, 337, 394, 648, 879, 1054
BspACI	CCGC	4 cut(s)	5, 639, 857, 1078
BspANI	GGCC	3 cut(s)	130, 808, 1032
BspCNI	CTCAG	2 cut(s)	366, 609
BspEI	TCCGGA	1 cut(s)	871
BspFNI	CGCG	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	283, 315
BspPI	GGATC	1 cut(s)	1049
BspQI	GCTCTTC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	83
BsrFI	RCCGGY	2 cut(s)	55, 130
BsrI	ACTGG	1 cut(s)	285
BssAI	RCCGGY	2 cut(s)	55, 130
BssECI	CCNNGG	3 cut(s)	561, 771, 972
BssMI	GATC	6 cut(s)	60, 337, 394, 648, 879, 1054
BssT1I	CCWWGG	2 cut(s)	561, 771
Bst4CI	ACNGT	3 cut(s)	268, 602, 674
Bst6I	CTCTTC	5 cut(s)	28, 469, 882, 891, 930
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstBAI	YACGTR	2 cut(s)	509, 539
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	374, 617
BstF5I	GGATG	3 cut(s)	571, 627, 880
BstFNI	CGCG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	6 cut(s)	63, 340, 397, 651, 882, 1057
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	6 cut(s)	60, 337, 394, 648, 879, 1054
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 136, 279, 443
BstNSI	RCATGY	1 cut(s)	260
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	285
BstV2I	GAAGAC	2 cut(s)	921, 1080
BstX2I	RGATCY	2 cut(s)	394, 879
BstYI	RGATCY	2 cut(s)	394, 879
BsuRI	GGCC	3 cut(s)	130, 808, 1032
BtsCI	GGATG	3 cut(s)	571, 627, 880
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	2 cut(s)	55, 130
Cfr13I	GGNCC	4 cut(s)	313, 583, 775, 806
CseI	GACGC	2 cut(s)	110, 128
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	5 cut(s)	257, 335, 497, 521, 1034
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	374, 617
DpnI	GATC	6 cut(s)	62, 339, 396, 650, 881, 1056
DpnII	GATC	6 cut(s)	60, 337, 394, 648, 879, 1054
EaeI	YGGCCR	1 cut(s)	1030
Eam1104I	CTCTTC	5 cut(s)	28, 469, 882, 891, 930
EarI	CTCTTC	5 cut(s)	28, 469, 882, 891, 930
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	561, 771
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	3 cut(s)	313, 583, 775
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	2 cut(s)	711, 906
Eco88I	CYCGRG	1 cut(s)	971
EcoICRI	GAGCTC	1 cut(s)	21
EcoT14I	CCWWGG	2 cut(s)	561, 771
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	2 cut(s)	561, 771
FaeI	CATG	5 cut(s)	260, 338, 500, 524, 1037
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	5 cut(s)	256, 334, 496, 520, 1033
FauI	CCCGC	1 cut(s)	864
Fnu4HI	GCNGC	2 cut(s)	274, 639
FokI	GGATG	3 cut(s)	578, 614, 887
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	274, 639
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	2 cut(s)	274, 639
HaeIII	GGCC	3 cut(s)	130, 808, 1032
HapII	CCGG	3 cut(s)	56, 131, 872
HgaI	GACGC	2 cut(s)	110, 128
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	5 cut(s)	260, 338, 500, 524, 1037
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	2 cut(s)	292, 544
HindII	GTYRAC	2 cut(s)	292, 544
HpaII	CCGG	3 cut(s)	56, 131, 872
HphI	GGTGA	3 cut(s)	70, 338, 1082
Hpy166II	GTNNAC	2 cut(s)	292, 544
Hpy188III	TCNNGA	3 cut(s)	311, 872, 998
Hpy8I	GTNNAC	2 cut(s)	292, 544
Hpy99I	CGWCG	2 cut(s)	46, 104
HpyAV	CCTTC	4 cut(s)	235, 418, 718, 934
HpyCH4III	ACNGT	3 cut(s)	268, 602, 674
HpyCH4IV	ACGT	4 cut(s)	294, 508, 538, 546
HpyCH4V	TGCA	2 cut(s)	88, 334
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 136, 279, 443
HpyF3I	CTNAG	2 cut(s)	374, 617
HpySE526I	ACGT	4 cut(s)	294, 508, 538, 546
Hsp92II	CATG	5 cut(s)	260, 338, 500, 524, 1037
HspAI	GCGC	1 cut(s)	446
Kpn2I	TCCGGA	1 cut(s)	871
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Kzo9I	GATC	6 cut(s)	60, 337, 394, 648, 879, 1054
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	1 cut(s)	285
MaeII	ACGT	4 cut(s)	294, 508, 538, 546
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	6 cut(s)	62, 339, 396, 650, 881, 1056
MboI	GATC	6 cut(s)	60, 337, 394, 648, 879, 1054
MflI	RGATCY	2 cut(s)	394, 879
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	4 cut(s)	319, 502, 513, 749
MlyI	GAGTC	1 cut(s)	911
MmeI	TCCRAC	3 cut(s)	24, 129, 153
MroI	TCCGGA	1 cut(s)	871
MroNI	GCCGGC	1 cut(s)	130
MseI	TTAA	2 cut(s)	72, 861
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	182, 215
MspI	CCGG	3 cut(s)	56, 131, 872
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	11, 136, 279, 443
NaeI	GCCGGC	1 cut(s)	132
NdeII	GATC	6 cut(s)	60, 337, 394, 648, 879, 1054
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	5 cut(s)	260, 338, 500, 524, 1037
NlaIV	GGNNCC	2 cut(s)	283, 315
NmeAIII	GCCGAG	1 cut(s)	40
NspI	RCATGY	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 918
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	9 cut(s)	176, 209, 653, 686, 815, 827, 836, 902, 929
PkrI	GCNGC	2 cut(s)	275, 640
PleI	GAGTC	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	911
Ppu21I	YACGTR	2 cut(s)	509, 539
Psp124BI	GAGCTC	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	283, 315
PspPI	GGNCC	4 cut(s)	313, 583, 775, 806
PsuI	RGATCY	2 cut(s)	394, 879
PvuII	CAGCTG	2 cut(s)	182, 215
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	72, 861
SatI	GCNGC	2 cut(s)	274, 639
Sau3AI	GATC	6 cut(s)	60, 337, 394, 648, 879, 1054
Sau96I	GGNCC	4 cut(s)	313, 583, 775, 806
SchI	GAGTC	1 cut(s)	911
SduI	GDGCHC	1 cut(s)	23
SinI	GGWCC	3 cut(s)	313, 583, 775
SmiMI	CAYNNNNRTG	1 cut(s)	525
Sse9I	AATT	4 cut(s)	319, 502, 513, 749
SsiI	CCGC	4 cut(s)	5, 639, 857, 1078
SstI	GAGCTC	1 cut(s)	23
StyI	CCWWGG	2 cut(s)	561, 771
TaaI	ACNGT	3 cut(s)	268, 602, 674
TaiI	ACGT	4 cut(s)	297, 511, 541, 549
TaqI	TCGA	3 cut(s)	99, 651, 747
TasI	AATT	4 cut(s)	319, 502, 513, 749
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	9 cut(s)	176, 209, 653, 686, 815, 827, 836, 902, 929
Tru1I	TTAA	2 cut(s)	72, 861
Tru9I	TTAA	2 cut(s)	72, 861
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	1 cut(s)	273
TspDTI	ATGAA	6 cut(s)	582, 616, 828, 840, 942, 1032
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	3 cut(s)	313, 583, 775
XapI	RAATTY	2 cut(s)	502, 513
XceI	RCATGY	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.