Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Reverse (-)

44365795 .. 44368575

Gene Structure 2781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCGGTGGTTGGCGAAAGCTCTTCGGCTCCGCCGGAACAGAAGCCGGTGATCGTTAGGGTCAAGCGCAAAGCCAACCAGTCTCCAATCGACGCTTTCTGGCTTGAAATCAATGAGAGGCCACCCAAGCGTCCACTTTTGGATTTGGCCAACCTTTCACTCTCTGATTCATCTCCAAAAGCAGCAGAAGAATTGAAGGCGAAGAAGGTTTTCGTGCAGCATGTAGAGACCGTGAGCAGCTTTGACACCACTATAGACATTTTCAAATCATTTGTGGACTCTACTACGGATCAAGCGTCTGAAAGTAAAACAAAGAGTGAAGAACGGAGACACTCTTTAAAAAAGGACAATAAACAAGAGCAGATTTTATCTAAAGCCAGACAGACGCAAGAGGTTGTAGCAAAAAATGCCCGTTTTGAACAAATATGGAGGAGCCGAAAGGGAAAGACAGAAGAATCCGATAAATTACAGGAAATGTGTCATTTCTATGATGTTCTTCGTGTTGATGCCGATGAAAGATCTAATGAACTGAAACAACAGGAAGAGTTATCTTTGGAGGACCAGAGGATTTTGCAGAGTTATTTGCCTCTACTCAGAGAATTCATCCCAAGTGCGGCTTTAGAGGTTGAATCAGATTTGCATGCTCAAAAACAAGAATCTGAAGATGAGTATGTATATGATGTATATGCTGTGAATGATGAAATGGATATAGCGGATGAAGATTCTTCCCACCCATTTCCTTTAGTGCAAGTTGATGATGATGATTTCTATGATGTGCCTGATGAATCAGAACATGACACTGAGGATTCAAATGATGAAAACAATCCAAATTTTGATTACCCGGATGAGGAATCTGAAGATGAAGAAGAGGAATCGGACGGTGAAGCATCTGATAATGAATCAAAAGATGAGAGTGCCAGTGACAGATCCTTCGAATCCAAGGATTTAGAGGAACATGTCATTTCAGGAGATGATATTTCTTTGGATTATGATGATGGTGGTGATGATGGGGATGGTGAAAACTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

344

Amino Acids

39.22

Weight (kDa)

4.24

Isoelectric Point (pI)

68.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 32, 614, 713
AclWI	GGATC	2 cut(s)	297, 921
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	599, 829
AcuI	CTGAAG	2 cut(s)	681, 876
AfiI	CCNNNNNNNGG	2 cut(s)	613, 847
AflIII	ACRYGT	1 cut(s)	955
AgsI	TTSAA	6 cut(s)	107, 196, 265, 419, 629, 810
AluBI	AGCT	2 cut(s)	21, 240
AluI	AGCT	2 cut(s)	21, 240
Alw26I	GTCTC	3 cut(s)	87, 221, 322
AlwI	GGATC	2 cut(s)	297, 921
AoxI	GGCC	2 cut(s)	119, 147
ApeKI	GCWGC	3 cut(s)	182, 217, 237
ApoI	RAATTY	2 cut(s)	599, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	914, 946
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	559
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	4 cut(s)	61, 893, 1013, 1028
AsuII	TTCGAA	1 cut(s)	933
AvaII	GGWCC	1 cut(s)	559
BalI	TGGCCA	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	194, 229, 249
BccI	CCATC	3 cut(s)	989, 1001, 1007
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	3 cut(s)	87, 221, 322
BfmI	CTRYAG	1 cut(s)	252
BglII	AGATCT	1 cut(s)	518
BisI	GCNGC	4 cut(s)	183, 218, 238, 615
BlsI	GCNGC	4 cut(s)	184, 219, 239, 616
Bme1390I	CCNGG	1 cut(s)	842
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	2 cut(s)	30, 434
BmrFI	CCNGG	1 cut(s)	842
BmsI	GCATC	2 cut(s)	496, 896
Bpu14I	TTCGAA	1 cut(s)	933
BpuMI	CCSGG	1 cut(s)	842
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	939
Bsc4I	CCNNNNNNNGG	2 cut(s)	613, 847
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	3 cut(s)	79, 918, 1028
BseDI	CCNNGG	1 cut(s)	939
BseGI	GGATG	5 cut(s)	603, 721, 850, 1018, 1032
BseLI	CCNNNNNNNGG	2 cut(s)	613, 847
BseMII	CTCAG	2 cut(s)	607, 792
BseNI	ACTGG	3 cut(s)	79, 918, 1028
BseRI	GAGGAG	1 cut(s)	445
BseXI	GCAGC	3 cut(s)	194, 229, 249
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	121, 149
BsiSI	CCGG	3 cut(s)	35, 47, 842
BslI	CCNNNNNNNGG	2 cut(s)	613, 847
BsmAI	GTCTC	3 cut(s)	87, 221, 322
BsnI	GGCC	2 cut(s)	121, 149
Bso31I	GGTCTC	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	933
Bsp143I	GATC	4 cut(s)	51, 289, 518, 926
BspACI	CCGC	4 cut(s)	5, 32, 614, 713
BspANI	GGCC	2 cut(s)	121, 149
BspCNI	CTCAG	2 cut(s)	606, 793
BspLI	GGNNCC	2 cut(s)	30, 434
BspPI	GGATC	2 cut(s)	297, 921
BspQI	GCTCTTC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	933
BspTNI	GGTCTC	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	3 cut(s)	79, 918, 1028
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	939
BssMI	GATC	4 cut(s)	51, 289, 518, 926
BssT1I	CCWWGG	1 cut(s)	939
Bst4CI	ACNGT	2 cut(s)	232, 881
Bst6I	CTCTTC	3 cut(s)	28, 537, 861
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	933
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	2 cut(s)	593, 801
BstF5I	GGATG	5 cut(s)	603, 721, 850, 1018, 1032
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	4 cut(s)	54, 292, 521, 929
BstMAI	GTCTC	3 cut(s)	87, 221, 322
BstMBI	GATC	4 cut(s)	51, 289, 518, 926
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 407
BstNSI	RCATGY	3 cut(s)	224, 644, 959
BstSCI	CCNGG	1 cut(s)	840
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	194, 229, 249
BstX2I	RGATCY	2 cut(s)	518, 926
BstYI	RGATCY	2 cut(s)	518, 926
BsuRI	GGCC	2 cut(s)	121, 149
BtsCI	GGATG	5 cut(s)	603, 721, 850, 1018, 1032
BtsIMutI	CAGTG	2 cut(s)	798, 925
Cac8I	GCNNGC	1 cut(s)	642
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	559
CseI	GACGC	4 cut(s)	101, 119, 285, 394
CviAII	CATG	4 cut(s)	221, 641, 794, 956
DdeI	CTNAG	2 cut(s)	593, 801
DpnI	GATC	4 cut(s)	53, 291, 520, 928
DpnII	GATC	4 cut(s)	51, 289, 518, 926
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	3 cut(s)	28, 537, 861
EarI	CTCTTC	3 cut(s)	28, 537, 861
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	939
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	681, 876
EcoRI	GAATTC	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	939
ErhI	CCWWGG	1 cut(s)	939
FaeI	CATG	4 cut(s)	224, 644, 797, 959
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FatI	CATG	4 cut(s)	220, 640, 793, 955
Fnu4HI	GCNGC	4 cut(s)	183, 218, 238, 615
FokI	GGATG	4 cut(s)	590, 728, 857, 1025
Fsp4HI	GCNGC	4 cut(s)	183, 218, 238, 615
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	4 cut(s)	183, 218, 238, 615
HaeIII	GGCC	2 cut(s)	121, 149
HapII	CCGG	3 cut(s)	35, 47, 842
HgaI	GACGC	4 cut(s)	101, 119, 285, 394
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	224, 644, 797, 959
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HpaII	CCGG	3 cut(s)	35, 47, 842
HphI	GGTGA	4 cut(s)	61, 893, 1013, 1028
Hpy166II	GTNNAC	2 cut(s)	134, 277
Hpy188III	TCNNGA	1 cut(s)	966
Hpy8I	GTNNAC	2 cut(s)	134, 277
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	190, 199, 940
HpyCH4III	ACNGT	2 cut(s)	232, 881
HpyCH4V	TGCA	4 cut(s)	217, 574, 640, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 407
HpyF3I	CTNAG	2 cut(s)	593, 801
Hsp92II	CATG	4 cut(s)	224, 644, 797, 959
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	51, 289, 518, 926
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	34, 432
Lsp1109I	GCAGC	3 cut(s)	194, 229, 249
LweI	GCATC	2 cut(s)	496, 896
MaeIII	GTNAC	1 cut(s)	920
MalI	GATC	4 cut(s)	53, 291, 520, 928
MboI	GATC	4 cut(s)	51, 289, 518, 926
MflI	RGATCY	2 cut(s)	518, 926
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	4 cut(s)	191, 464, 599, 829
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	272
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	3 cut(s)	35, 47, 842
MspR9I	CCNGG	1 cut(s)	842
MwoI	GCNNNNNNNGC	2 cut(s)	127, 407
NciI	CCSGG	1 cut(s)	842
NdeII	GATC	4 cut(s)	51, 289, 518, 926
NlaIII	CATG	4 cut(s)	224, 644, 797, 959
NlaIV	GGNNCC	2 cut(s)	30, 434
NmuCI	GTSAC	1 cut(s)	920
NspI	RCATGY	3 cut(s)	224, 644, 959
NspV	TTCGAA	1 cut(s)	933
PaeI	GCATGC	1 cut(s)	644
PciI	ACATGT	1 cut(s)	955
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	184, 219, 239, 616
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PscI	ACATGT	1 cut(s)	955
PspN4I	GGNNCC	2 cut(s)	30, 434
PspPI	GGNCC	1 cut(s)	559
PsuI	RGATCY	2 cut(s)	518, 926
RseI	CAYNNNNRTG	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	4 cut(s)	183, 218, 238, 615
Sau3AI	GATC	4 cut(s)	51, 289, 518, 926
Sau96I	GGNCC	1 cut(s)	559
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	842
SetI	ASST	6 cut(s)	23, 156, 210, 242, 396, 627
SfaNI	GCATC	2 cut(s)	496, 896
SfcI	CTRYAG	1 cut(s)	252
SfuI	TTCGAA	1 cut(s)	933
SinI	GGWCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	486
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	4 cut(s)	191, 464, 599, 829
SsiI	CCGC	4 cut(s)	5, 32, 614, 713
StyD4I	CCNGG	1 cut(s)	840
StyI	CCWWGG	1 cut(s)	939
TaaI	ACNGT	2 cut(s)	232, 881
TaqI	TCGA	2 cut(s)	90, 933
TasI	AATT	4 cut(s)	191, 464, 599, 829
TauI	GCSGC	1 cut(s)	617
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	2 cut(s)	805, 925
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	3 cut(s)	182, 217, 237
Tsp45I	GTSAC	1 cut(s)	920
TspGWI	ACGGA	2 cut(s)	302, 340
TspRI	CASTG	2 cut(s)	805, 925
VpaK11BI	GGWCC	1 cut(s)	559
XapI	RAATTY	2 cut(s)	599, 829
XceI	RCATGY	3 cut(s)	224, 644, 959
XmnI	GAANNNNTTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.