Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Reverse (-)

18526981 .. 18531239

Gene Structure 4259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27270.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCTACCGGTGACCAAACAGGGCCTTCGGAACAGAAGGCGGTGATTGTAAGGGTTAAGCGCAAAGCCAACCAGTCTCCCATTGATGCTTTCTGGCTTGAAATCAATGAGAGGCCGCTCAAGCGTCCTCTTTTGGATTTGGCCAAGCTTTCACTCTCTGATTCACCAGGAAAAGCAACAGCAGAAGAATTGAAGACAAAGAAGGTTTTTGTGCAGCATGTAGAGACTGTAAGCAGCTTTGACATCACGATTGACCTTGTGAAATCATTTGTGGAAGCTACTACGGATGGAGTGTCCGAAAGTAAAACAAAGAGTGAAGAACGGAGACACTCTTTAAAAAAGGATAATAAACAAGAGCAGCTTTTGTCTAAAGCCAAACAGAGGCAAGAGGCCGTAGCAAAAAATGCCCGTTTTGAACAAATATGGAGGAGCCGAAAGGGAAAGGAAGAAGAATCTGATAAATTACAGGAAATGTGTCATTTCTATGATGTTATTCGTGTTGATACCGAGGAAAGATCTAATGAACAGAAACAGCAGGATGAGTTATCGTTGGAGGACCAGAGGATTTTGCAGAGCTACTTGCCTCTACTGAGAGAATTCATTCCCAGTGCGGCTTTAGAAGTTGAATCAGATTTGCATGCTCAAAAACAAGAATCTGAAGATGAGTATGTATATGACGTCTATGCTGTGAACGATGAAATGCATATAGCGGATGAAGATTCTTCCCACCCATTTCCTTTGGTGCAAGTTGATGATGAGGATGTCTATGATGTGCCTGATGAATCAGAACATGACTCTGAGGATTCAAATGATGAAAACAATCCAAATTTTGATTACCCGGATGAGGAATCTGAAGATGAAGAAGAGGAATCGGACAGTGAAGCATCTGATAATGAATCAAAAGATGAGAGTGTCAGTGATAGATCCTTAGAATCCAAGGATTTAGAGGAGTATGCGATTTCAGGTGATGATCTTTCTTTTGATCATGAAGATGATAGGGATGATGGTGAAGACTGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

341

Amino Acids

39.17

Weight (kDa)

4.31

Isoelectric Point (pI)

74.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	681
AccBSI	CCGCTC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	4 cut(s)	41, 116, 611, 710
AclWI	GGATC	1 cut(s)	918
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	596, 826
AcuI	CTGAAG	2 cut(s)	678, 873
AcyI	GRCGYC	1 cut(s)	678
AfiI	CCNNNNNNNGG	2 cut(s)	381, 844
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	5 cut(s)	101, 193, 416, 626, 807
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	5 cut(s)	148, 237, 278, 361, 576
AluI	AGCT	5 cut(s)	148, 237, 278, 361, 576
Alw26I	GTCTC	3 cut(s)	81, 218, 319
AlwI	GGATC	1 cut(s)	918
AoxI	GGCC	4 cut(s)	23, 113, 141, 390
ApeKI	GCWGC	3 cut(s)	214, 234, 358
ApoI	RAATTY	2 cut(s)	596, 826
AsiGI	ACCGGT	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	600
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	23, 556
AsuC2I	CCSGG	1 cut(s)	839
AsuHPI	GGTGA	5 cut(s)	23, 55, 156, 977, 1019
AvaII	GGWCC	1 cut(s)	556
BalI	TGGCCA	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	200, 1017
BbvI	GCAGC	3 cut(s)	226, 246, 370
BccI	CCATC	2 cut(s)	281, 998
BceAI	ACGGC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	168
BclI	TGATCA	1 cut(s)	982
BcnI	CCSGG	1 cut(s)	839
BcoDI	GTCTC	3 cut(s)	81, 218, 319
BglII	AGATCT	1 cut(s)	515
BisI	GCNGC	5 cut(s)	116, 215, 235, 359, 612
BlsI	GCNGC	5 cut(s)	117, 216, 236, 360, 613
Bme1390I	CCNGG	2 cut(s)	168, 839
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	2 cut(s)	23, 556
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	2 cut(s)	168, 839
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	2 cut(s)	76, 893
BmuI	ACTGGG	1 cut(s)	600
BpiI	GAAGAC	2 cut(s)	200, 1017
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	839
BsaHI	GRCGYC	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	507, 936
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 844
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	3 cut(s)	73, 606, 1019
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	507, 936
BseGI	GGATG	7 cut(s)	292, 544, 718, 766, 847, 1006, 1023
BseLI	CCNNNNNNNGG	2 cut(s)	381, 844
BseMII	CTCAG	2 cut(s)	581, 789
BseNI	ACTGG	3 cut(s)	73, 606, 1019
BseRI	GAGGAG	2 cut(s)	442, 962
BseXI	GCAGC	3 cut(s)	226, 246, 370
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	4 cut(s)	25, 115, 143, 392
BshTI	ACCGGT	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	9, 839
BslI	CCNNNNNNNGG	2 cut(s)	381, 844
BsmAI	GTCTC	3 cut(s)	81, 218, 319
BsnI	GGCC	4 cut(s)	25, 115, 143, 392
Bsp143I	GATC	4 cut(s)	515, 923, 970, 982
BspACI	CCGC	4 cut(s)	41, 116, 611, 710
BspANI	GGCC	4 cut(s)	25, 115, 143, 392
BspCNI	CTCAG	2 cut(s)	582, 790
BspHI	TCATGA	1 cut(s)	985
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	918
BsrBI	CCGCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	3 cut(s)	73, 606, 1019
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	507, 936
BssMI	GATC	4 cut(s)	515, 923, 970, 982
BssNI	GRCGYC	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	936
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	229, 878
Bst6I	CTCTTC	1 cut(s)	858
BstACI	GRCGYC	1 cut(s)	678
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	3 cut(s)	590, 798, 928
BstEII	GGTNACC	1 cut(s)	11
BstF5I	GGATG	7 cut(s)	292, 544, 718, 766, 847, 1006, 1023
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	4 cut(s)	518, 926, 973, 985
BstMAI	GTCTC	3 cut(s)	81, 218, 319
BstMBI	GATC	4 cut(s)	515, 923, 970, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 404
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	2 cut(s)	221, 641
BstPI	GGTNACC	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	166, 837
BstV1I	GCAGC	3 cut(s)	226, 246, 370
BstV2I	GAAGAC	2 cut(s)	200, 1017
BstX2I	RGATCY	2 cut(s)	515, 923
BstYI	RGATCY	2 cut(s)	515, 923
BsuRI	GGCC	4 cut(s)	25, 115, 143, 392
BtsCI	GGATG	7 cut(s)	292, 544, 718, 766, 847, 1006, 1023
BtsIMutI	CAGTG	3 cut(s)	613, 883, 922
Cac8I	GCNNGC	1 cut(s)	639
CciI	TCATGA	1 cut(s)	985
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	23, 556
CseI	GACGC	1 cut(s)	113
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	4 cut(s)	218, 638, 791, 986
DdeI	CTNAG	3 cut(s)	590, 798, 928
DpnI	GATC	4 cut(s)	517, 925, 972, 984
DpnII	GATC	4 cut(s)	515, 923, 970, 982
DraI	TTTAAA	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	936
Eco47I	GGWCC	1 cut(s)	556
Eco57I	CTGAAG	2 cut(s)	678, 873
Eco91I	GGTNACC	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	11
EcoRI	GAATTC	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	936
EcoT22I	ATGCAT	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	936
FaeI	CATG	4 cut(s)	221, 641, 794, 989
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	4 cut(s)	217, 637, 790, 985
FbaI	TGATCA	1 cut(s)	982
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	116, 215, 235, 359, 612
FokI	GGATG	6 cut(s)	299, 551, 725, 773, 854, 1013
Fsp4HI	GCNGC	5 cut(s)	116, 215, 235, 359, 612
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	5 cut(s)	116, 215, 235, 359, 612
HaeIII	GGCC	4 cut(s)	25, 115, 143, 392
HapII	CCGG	2 cut(s)	9, 839
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	678
Hin1II	CATG	4 cut(s)	221, 641, 794, 989
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	146
HpaII	CCGG	2 cut(s)	9, 839
HphI	GGTGA	5 cut(s)	23, 55, 156, 977, 1019
Hpy166II	GTNNAC	2 cut(s)	6, 691
Hpy188III	TCNNGA	2 cut(s)	247, 986
Hpy8I	GTNNAC	2 cut(s)	6, 691
HpyAV	CCTTC	3 cut(s)	31, 36, 196
HpyCH4III	ACNGT	2 cut(s)	229, 878
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	5 cut(s)	214, 571, 637, 703, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 404
HpyF3I	CTNAG	3 cut(s)	590, 798, 928
HpySE526I	ACGT	1 cut(s)	678
Hsp92I	GRCGYC	1 cut(s)	678
Hsp92II	CATG	4 cut(s)	221, 641, 794, 989
HspAI	GCGC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	982
Kzo9I	GATC	4 cut(s)	515, 923, 970, 982
LmnI	GCTCC	1 cut(s)	429
Lsp1109I	GCAGC	3 cut(s)	226, 246, 370
LweI	GCATC	2 cut(s)	76, 893
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	4 cut(s)	517, 925, 972, 984
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	4 cut(s)	515, 923, 970, 982
MflI	RGATCY	2 cut(s)	515, 923
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	4 cut(s)	188, 461, 596, 826
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	788
MmeI	TCCRAC	1 cut(s)	531
Mox20I	TGGCCA	1 cut(s)	143
Mph1103I	ATGCAT	1 cut(s)	705
MroXI	GAANNNNTTC	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	2 cut(s)	57, 335
MslI	CAYNNNNRTG	2 cut(s)	483, 990
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	2 cut(s)	9, 839
MspR9I	CCNGG	2 cut(s)	168, 839
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	121, 404
NciI	CCSGG	1 cut(s)	839
NdeII	GATC	4 cut(s)	515, 923, 970, 982
NlaIII	CATG	4 cut(s)	221, 641, 794, 989
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	11
NsiI	ATGCAT	1 cut(s)	705
NspI	RCATGY	2 cut(s)	221, 641
PaeI	GCATGC	1 cut(s)	641
PagI	TCATGA	1 cut(s)	985
PdmI	GAANNNNTTC	1 cut(s)	600
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	5 cut(s)	117, 216, 236, 360, 613
PleI	GAGTC	1 cut(s)	788
PpsI	GAGTC	1 cut(s)	788
Psp6I	CCWGG	1 cut(s)	166
PspEI	GGTNACC	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	2 cut(s)	23, 556
PsuI	RGATCY	2 cut(s)	515, 923
RseI	CAYNNNNRTG	2 cut(s)	483, 990
SaqAI	TTAA	2 cut(s)	57, 335
SatI	GCNGC	5 cut(s)	116, 215, 235, 359, 612
Sau3AI	GATC	4 cut(s)	515, 923, 970, 982
Sau96I	GGNCC	2 cut(s)	23, 556
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	2 cut(s)	168, 839
SetI	ASST	9 cut(s)	150, 207, 239, 258, 280, 363, 578, 681, 967
SfaNI	GCATC	2 cut(s)	76, 893
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	2 cut(s)	483, 990
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SphI	GCATGC	1 cut(s)	641
Sse9I	AATT	4 cut(s)	188, 461, 596, 826
SsiI	CCGC	4 cut(s)	41, 116, 611, 710
StyD4I	CCNGG	2 cut(s)	166, 837
StyI	CCWWGG	1 cut(s)	936
TaaI	ACNGT	2 cut(s)	229, 878
TaiI	ACGT	1 cut(s)	681
TasI	AATT	4 cut(s)	188, 461, 596, 826
TauI	GCSGC	2 cut(s)	118, 614
Tru1I	TTAA	2 cut(s)	57, 335
Tru9I	TTAA	2 cut(s)	57, 335
TscAI	CASTG	3 cut(s)	613, 883, 922
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	3 cut(s)	214, 234, 358
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	9 cut(s)	537, 589, 711, 729, 795, 828, 873, 909, 1002
TspGWI	ACGGA	2 cut(s)	299, 337
TspRI	CASTG	3 cut(s)	613, 883, 922
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	2 cut(s)	596, 826
XceI	RCATGY	2 cut(s)	221, 641
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	600
ZraI	GACGTC	1 cut(s)	679
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.