Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Reverse (-)

3879973 .. 3883533

Gene Structure 3561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05000.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCGGTGGTCGCCGAGAGCTCTTCGGCTTCGCCCAACCCACCGGAAGACAAGCCGGTGATCGTTAGGGTTAAACGCAAGGCATTGCAGTTCTCACTTGACGCTTTCTGGCTGGAAATCAATGAGAGGCCGGTGAAGCGTCCGTTGGTGGATTTTGAGAAGCTTTCAATGTTGGATTCAGCTGGAAAGGGTAACGAATGTTGTTGGATATCAATTGACAAGGCAGCAGAACTGAAAACCAAGAAGCTTTTGGTACAGCATGTAGAGACAGTAAGCAGCTTTGACACGAGTATTGATGTTGTGAAATCATTTCTGGACCCTAATACTGGTGATGTGCGTGATCGTAAAACAAAGATTGGAGAACGTAAATATGCTTTGAGAAAGGAGAATCAGAAACAAGATCTGATTTTGTCTAAAGCCAGACAGAGGAAGGAGGTTGTAGCAAAAAATGCACGTTTTGAACAAATATGGAGGAGCAGAAGAGGAAACAAAGAAACATCACATGAGAATTTGCATGAAATGTGTCATTTCTATGATATTATACGTGTTGACGTTGCAGAAAAACCTAAGGATGAGATATCTTTGGAGGACCAGAAGCTTTTGAACAGTTACTTGCCTCTGCTGAGAGAGTTCATCCCATTTGCTGCTTCTGAGATCGAATCAGATTTATACGCTAACAGTTCCAAACAAGATTCGGAAGATGAGTATGTGTATGACTTATATGCTGTGAAGGAGGAAAGTGATATGGCTATTGAAGAAACTTCAAACCCATTCCCCTTGGTCCAAGTTGATGACGAGGATTTCTATGATGGGCCTGATGAATCTGAATATGAATCTGATGATTCAAATGCCGAAAACAACCCGCTAAATGATTATCCGGATGAGATATCTGAAGAAGAAGAAGAAGAGGAATCAGCGAACAAAGACTCCGATGATGAATCAGAAGAAAATGAAAGTTCCAGCGACAAATCATCAGAACCTGAGGATTTAGATGAAAATGACTTTTTTGAAGATTATATATACGATGAAAACAACGACGGCCATGACTTTGATTACCATGTTGATCCAAGTGATGAAGGTGAAGACCGGAATACGATCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

368

Amino Acids

42.34

Weight (kDa)

4.31

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	877
AciI	CCGC	2 cut(s)	5, 863
AclWI	GGATC	1 cut(s)	1058
AcoI	YGGCCR	1 cut(s)	1039
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	912
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	326, 426
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	7 cut(s)	168, 461, 604, 755, 765, 846, 1010
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AloI	GAACNNNNNNTCC	2 cut(s)	911, 943
AluBI	AGCT	6 cut(s)	21, 163, 182, 247, 279, 598
AluI	AGCT	6 cut(s)	21, 163, 182, 247, 279, 598
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	1058
AlwNI	CAGNNNCTG	1 cut(s)	980
Aor13HI	TCCGGA	1 cut(s)	877
AoxI	GGCC	3 cut(s)	128, 812, 1039
ApeKI	GCWGC	3 cut(s)	224, 276, 644
ApoI	RAATTY	1 cut(s)	508
AspS9I	GGNCC	4 cut(s)	316, 589, 781, 812
AsuHPI	GGTGA	4 cut(s)	70, 145, 341, 1091
AvaII	GGWCC	3 cut(s)	316, 589, 781
AxyI	CCTNAGG	2 cut(s)	567, 981
BanII	GRGCYC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	286
BbsI	GAAGAC	2 cut(s)	54, 1089
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	236, 288, 631
BccI	CCATC	1 cut(s)	803
BceAI	ACGGC	1 cut(s)	1054
BcoDI	GTCTC	1 cut(s)	260
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	3 cut(s)	225, 277, 645
BlsI	GCNGC	3 cut(s)	226, 278, 646
Bme18I	GGWCC	3 cut(s)	316, 589, 781
BmgT120I	GGNCC	4 cut(s)	316, 589, 781, 812
BmiI	GGNNCC	1 cut(s)	318
BpiI	GAAGAC	2 cut(s)	54, 1089
BsaAI	YACGTR	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	777
BsaWI	WCCGGW	3 cut(s)	43, 877, 1086
BsaXI	ACNNNNNCTCC	2 cut(s)	911, 941
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 426
Bse118I	RCCGGY	2 cut(s)	55, 130
Bse1I	ACTGG	1 cut(s)	331
Bse21I	CCTNAGG	2 cut(s)	567, 981
Bse3DI	GCAATG	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	877
BseDI	CCNNGG	1 cut(s)	777
BseGI	GGATG	3 cut(s)	577, 633, 886
BseLI	CCNNNNNNNGG	2 cut(s)	326, 426
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	3 cut(s)	614, 642, 972
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	3 cut(s)	236, 288, 631
BshFI	GGCC	3 cut(s)	130, 814, 1041
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	5 cut(s)	44, 56, 131, 878, 1087
BslI	CCNNNNNNNGG	2 cut(s)	326, 426
BsmAI	GTCTC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	130, 814, 1041
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp13I	TCCGGA	1 cut(s)	877
Bsp143I	GATC	6 cut(s)	60, 340, 400, 654, 1063, 1095
BspACI	CCGC	2 cut(s)	5, 863
BspANI	GGCC	3 cut(s)	130, 814, 1041
BspCNI	CTCAG	3 cut(s)	615, 643, 973
BspEI	TCCGGA	1 cut(s)	877
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	1058
BspQI	GCTCTTC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	83
BsrFI	RCCGGY	2 cut(s)	55, 130
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	2 cut(s)	55, 130
BssECI	CCNNGG	1 cut(s)	777
BssMI	GATC	6 cut(s)	60, 340, 400, 654, 1063, 1095
BssSI	CACGAG	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	286
Bst4CI	ACNGT	3 cut(s)	271, 608, 680
Bst6I	CTCTTC	3 cut(s)	28, 475, 900
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	545
BstDEI	CTNAG	4 cut(s)	567, 623, 651, 981
BstF5I	GGATG	3 cut(s)	577, 633, 886
BstKTI	GATC	6 cut(s)	63, 343, 403, 657, 1066, 1098
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	6 cut(s)	60, 340, 400, 654, 1063, 1095
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 136, 449
BstNSI	RCATGY	1 cut(s)	263
BstV1I	GCAGC	3 cut(s)	236, 288, 631
BstV2I	GAAGAC	2 cut(s)	54, 1089
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
Bsu36I	CCTNAGG	2 cut(s)	567, 981
BsuRI	GGCC	3 cut(s)	130, 814, 1041
BtsCI	GGATG	3 cut(s)	577, 633, 886
CaiI	CAGNNNCTG	1 cut(s)	980
Cfr10I	RCCGGY	2 cut(s)	55, 130
Cfr13I	GGNCC	4 cut(s)	316, 589, 781, 812
CseI	GACGC	2 cut(s)	110, 128
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	5 cut(s)	260, 503, 515, 1043, 1058
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	4 cut(s)	567, 623, 651, 981
DpnI	GATC	6 cut(s)	62, 342, 402, 656, 1065, 1097
DpnII	GATC	6 cut(s)	60, 340, 400, 654, 1063, 1095
EaeI	YGGCCR	1 cut(s)	1039
Eam1104I	CTCTTC	3 cut(s)	28, 475, 900
EarI	CTCTTC	3 cut(s)	28, 475, 900
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	23
Eco32I	GATATC	3 cut(s)	210, 579, 888
Eco47I	GGWCC	3 cut(s)	316, 589, 781
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	912
Eco81I	CCTNAGG	2 cut(s)	567, 981
EcoICRI	GAGCTC	1 cut(s)	21
EcoRV	GATATC	3 cut(s)	210, 579, 888
EcoT14I	CCWWGG	1 cut(s)	777
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	5 cut(s)	263, 506, 518, 1046, 1061
FatI	CATG	5 cut(s)	259, 502, 514, 1042, 1057
FauI	CCCGC	1 cut(s)	870
Fnu4HI	GCNGC	3 cut(s)	225, 277, 645
FokI	GGATG	3 cut(s)	584, 620, 893
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	225, 277, 645
GluI	GCNGC	3 cut(s)	225, 277, 645
HaeIII	GGCC	3 cut(s)	130, 814, 1041
HapII	CCGG	5 cut(s)	44, 56, 131, 878, 1087
HgaI	GACGC	2 cut(s)	110, 128
Hin1II	CATG	5 cut(s)	263, 506, 518, 1046, 1061
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	3 cut(s)	161, 245, 596
HpaII	CCGG	5 cut(s)	44, 56, 131, 878, 1087
HphI	GGTGA	4 cut(s)	70, 145, 341, 1091
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188III	TCNNGA	2 cut(s)	314, 878
Hpy8I	GTNNAC	1 cut(s)	550
Hpy99I	CGWCG	1 cut(s)	1040
HpyAV	CCTTC	3 cut(s)	424, 724, 1070
HpyCH4III	ACNGT	3 cut(s)	271, 608, 680
HpyCH4IV	ACGT	4 cut(s)	364, 454, 544, 552
HpyCH4V	TGCA	4 cut(s)	88, 452, 514, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 136, 449
HpyF3I	CTNAG	4 cut(s)	567, 623, 651, 981
HpySE526I	ACGT	4 cut(s)	364, 454, 544, 552
Hsp92II	CATG	5 cut(s)	263, 506, 518, 1046, 1061
Kpn2I	TCCGGA	1 cut(s)	877
Kzo9I	GATC	6 cut(s)	60, 340, 400, 654, 1063, 1095
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	474
Lsp1109I	GCAGC	3 cut(s)	236, 288, 631
MaeII	ACGT	4 cut(s)	364, 454, 544, 552
MaeIII	GTNAC	2 cut(s)	191, 608
MalI	GATC	6 cut(s)	62, 342, 402, 656, 1065, 1097
MboI	GATC	6 cut(s)	60, 340, 400, 654, 1063, 1095
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	2 cut(s)	213, 508
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	2 cut(s)	153, 185
MroI	TCCGGA	1 cut(s)	877
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	5 cut(s)	44, 56, 131, 878, 1087
MunI	CAATTG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	11, 136, 449
NdeII	GATC	6 cut(s)	60, 340, 400, 654, 1063, 1095
NlaIII	CATG	5 cut(s)	263, 506, 518, 1046, 1061
NlaIV	GGNNCC	1 cut(s)	318
NmeAIII	GCCGAG	1 cut(s)	40
NspI	RCATGY	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	28
PfeI	GAWTC	9 cut(s)	176, 388, 659, 692, 821, 833, 842, 911, 938
PkrI	GCNGC	3 cut(s)	226, 278, 646
PleI	GAGTC	1 cut(s)	920
PpsI	GAGTC	1 cut(s)	920
Ppu21I	YACGTR	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	4 cut(s)	316, 589, 781, 812
PstNI	CAGNNNCTG	1 cut(s)	980
PsuI	RGATCY	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	225, 277, 645
Sau3AI	GATC	6 cut(s)	60, 340, 400, 654, 1063, 1095
Sau96I	GGNCC	4 cut(s)	316, 589, 781, 812
SchI	GAGTC	1 cut(s)	920
SduI	GDGCHC	1 cut(s)	23
SinI	GGWCC	3 cut(s)	316, 589, 781
SmiMI	CAYNNNNRTG	1 cut(s)	531
Sse9I	AATT	2 cut(s)	213, 508
SsiI	CCGC	2 cut(s)	5, 863
SstI	GAGCTC	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	3 cut(s)	271, 608, 680
TaiI	ACGT	4 cut(s)	367, 457, 547, 555
TaqI	TCGA	1 cut(s)	657
TasI	AATT	2 cut(s)	213, 508
TfiI	GAWTC	9 cut(s)	176, 388, 659, 692, 821, 833, 842, 911, 938
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	3 cut(s)	224, 276, 644
TspDTI	ATGAA	9 cut(s)	531, 622, 834, 846, 951, 966, 1008, 1041, 1089
TspGWI	ACGGA	1 cut(s)	132
VpaK11BI	GGWCC	3 cut(s)	316, 589, 781
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.