Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Reverse (-)

5238947 .. 5251226

Gene Structure 12280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1060500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCGGTGGTCGCCGAGAGCTCTTCGGCTTCGCCTAACCCGCCGGAAGACAAGCCGGTGATCGTTAGGGTTAAACGCAAGGCATTGCAGTCCTCACTCGACGCTTTCTGGCTGGAAATCAATGAGAGGCCGGTGAAGCGTCCGTTGGTGGATTTTGAGAAGCTTTCGATGTTGGATTCAGCTGGAAAGGAACTGAAAACCAAGAAGGTTTTGGTACAGCATGTAGAGACAGTAAGCAGCTTTGACACCAGTGTTGATGTTGTGAAATCATTTCTGGACCCTAATACTGGTGACATGCGTGATCGTAAAACAAAGATTGGAGAACGTAAATACGCTTTGAGAAAGGAGAATAAACAAGATCTGATTTTGTCTAAAGCCAGACAGAGGAAGGAGGTTGTAGCAAAAAATGCACGTTTTGAACAAATATGGAGGAGCAGAAGAGGAAACAAAGAAACATCACATGAGAATTTACATGAAATGTGTCATTTCTATGATATTATACGTGTTGATGTTGCAGAAAAACCTAAGGATGAGATATCTTTGGAGGACCAGAAGCTTTTGAACAGTTACTTGCCTCTGCTGAGAGAGTTCATCCCAATTGCTGCTTCTGAGATCGAATCAGATTTATACGCTAACAGTTCCAAACAAGATTCGGAAGATGAGTATGTGTATGACTTGTATGCTGTGAAGGAGGAAAGTGATATGGCTATTGAAGAAACTTCAAACCCATTCCCCTTGGTCCAAGTTGATGACGAGGATTTCTATGATGGGCCTGATGAATCTGAATATGAATCTGATGATTCAAATGCTGAAAACAACCCGCTAAATGATTATCCGGATGAGATATCTGAAGAGGAAGAAGAGGAATCAGCGAAGGAAAACTCCGATGATGAATCAGAAGAAAATGAAAGTTCCAGCGACAAATCATCAGAACCTGAGGATTTAGATGAAAATGACTTTTTTGAAGATTATATATACGATGAAAACAACGACGGCCATGACTCTGATTACCATGTTGATCCAAGTGATGAAGGTGAAGACCGGAATACGGTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

353

Amino Acids

40.54

Weight (kDa)

4.33

Isoelectric Point (pI)

61.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iwr1	PF08574	220 - 281	4.3e-06	Transcription factor Iwr1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	835
AciI	CCGC	3 cut(s)	5, 41, 821
AclWI	GGATC	1 cut(s)	1013
AcoI	YGGCCR	1 cut(s)	994
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	870
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	3 cut(s)	287, 384, 1048
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	6 cut(s)	419, 562, 713, 723, 804, 965
AjuI	GAANNNNNNNTTGG	4 cut(s)	128, 160, 589, 621
AluBI	AGCT	5 cut(s)	21, 163, 182, 240, 556
AluI	AGCT	5 cut(s)	21, 163, 182, 240, 556
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	1013
AlwNI	CAGNNNCTG	1 cut(s)	935
Aor13HI	TCCGGA	1 cut(s)	835
AoxI	GGCC	3 cut(s)	128, 770, 994
ApeKI	GCWGC	2 cut(s)	237, 602
ApoI	RAATTY	1 cut(s)	466
AspS9I	GGNCC	4 cut(s)	277, 547, 739, 770
AsuHPI	GGTGA	4 cut(s)	70, 145, 302, 1046
AvaII	GGWCC	3 cut(s)	277, 547, 739
AxyI	CCTNAGG	2 cut(s)	525, 936
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	54, 1044
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	249, 589
BccI	CCATC	1 cut(s)	761
BceAI	ACGGC	1 cut(s)	1009
BcoDI	GTCTC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	2 cut(s)	238, 603
BlsI	GCNGC	2 cut(s)	239, 604
Bme18I	GGWCC	3 cut(s)	277, 547, 739
BmgT120I	GGNCC	4 cut(s)	277, 547, 739, 770
BmiI	GGNNCC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	54, 1044
BsaAI	YACGTR	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	735
BsaWI	WCCGGW	2 cut(s)	835, 1041
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 384, 1048
Bse118I	RCCGGY	2 cut(s)	55, 130
Bse1I	ACTGG	2 cut(s)	249, 292
Bse21I	CCTNAGG	2 cut(s)	525, 936
Bse3DI	GCAATG	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	835
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	3 cut(s)	535, 591, 844
BseLI	CCNNNNNNNGG	3 cut(s)	287, 384, 1048
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	3 cut(s)	572, 600, 927
BseNI	ACTGG	2 cut(s)	249, 292
BseRI	GAGGAG	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	249, 589
BshFI	GGCC	3 cut(s)	130, 772, 996
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	5 cut(s)	44, 56, 131, 836, 1042
BslI	CCNNNNNNNGG	3 cut(s)	287, 384, 1048
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	130, 772, 996
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp13I	TCCGGA	1 cut(s)	835
Bsp143I	GATC	5 cut(s)	60, 301, 358, 612, 1018
BspACI	CCGC	3 cut(s)	5, 41, 821
BspANI	GGCC	3 cut(s)	130, 772, 996
BspCNI	CTCAG	3 cut(s)	573, 601, 928
BspEI	TCCGGA	1 cut(s)	835
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	1013
BspQI	GCTCTTC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	83
BsrFI	RCCGGY	2 cut(s)	55, 130
BsrI	ACTGG	2 cut(s)	249, 292
BssAI	RCCGGY	2 cut(s)	55, 130
BssECI	CCNNGG	1 cut(s)	735
BssMI	GATC	5 cut(s)	60, 301, 358, 612, 1018
BssT1I	CCWWGG	1 cut(s)	735
Bst4CI	ACNGT	4 cut(s)	232, 566, 638, 1051
Bst6I	CTCTTC	4 cut(s)	28, 433, 846, 855
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	503
BstDEI	CTNAG	4 cut(s)	525, 581, 609, 936
BstF5I	GGATG	3 cut(s)	535, 591, 844
BstKTI	GATC	5 cut(s)	63, 304, 361, 615, 1021
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	60, 301, 358, 612, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 40, 136, 407
BstNSI	RCATGY	2 cut(s)	224, 298
BstV1I	GCAGC	2 cut(s)	249, 589
BstV2I	GAAGAC	2 cut(s)	54, 1044
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
Bsu36I	CCTNAGG	2 cut(s)	525, 936
BsuRI	GGCC	3 cut(s)	130, 772, 996
BtsCI	GGATG	3 cut(s)	535, 591, 844
BtsIMutI	CAGTG	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	935
Cfr10I	RCCGGY	2 cut(s)	55, 130
Cfr13I	GGNCC	4 cut(s)	277, 547, 739, 770
CseI	GACGC	2 cut(s)	110, 128
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	6 cut(s)	221, 295, 461, 473, 998, 1013
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	4 cut(s)	525, 581, 609, 936
DpnI	GATC	5 cut(s)	62, 303, 360, 614, 1020
DpnII	GATC	5 cut(s)	60, 301, 358, 612, 1018
EaeI	YGGCCR	1 cut(s)	994
Eam1104I	CTCTTC	4 cut(s)	28, 433, 846, 855
EarI	CTCTTC	4 cut(s)	28, 433, 846, 855
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	23
Eco32I	GATATC	2 cut(s)	537, 846
Eco47I	GGWCC	3 cut(s)	277, 547, 739
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	870
Eco81I	CCTNAGG	2 cut(s)	525, 936
EcoICRI	GAGCTC	1 cut(s)	21
EcoRV	GATATC	2 cut(s)	537, 846
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	6 cut(s)	224, 298, 464, 476, 1001, 1016
FatI	CATG	6 cut(s)	220, 294, 460, 472, 997, 1012
FauI	CCCGC	2 cut(s)	48, 828
Fnu4HI	GCNGC	2 cut(s)	238, 603
FokI	GGATG	3 cut(s)	542, 578, 851
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	238, 603
GluI	GCNGC	2 cut(s)	238, 603
HaeIII	GGCC	3 cut(s)	130, 772, 996
HapII	CCGG	5 cut(s)	44, 56, 131, 836, 1042
HgaI	GACGC	2 cut(s)	110, 128
Hin1II	CATG	6 cut(s)	224, 298, 464, 476, 1001, 1016
HindIII	AAGCTT	2 cut(s)	161, 554
HinfI	GANTC	9 cut(s)	176, 617, 650, 779, 791, 800, 866, 893, 1001
HpaII	CCGG	5 cut(s)	44, 56, 131, 836, 1042
HphI	GGTGA	4 cut(s)	70, 145, 302, 1046
Hpy188III	TCNNGA	2 cut(s)	275, 836
Hpy99I	CGWCG	2 cut(s)	104, 995
HpyAV	CCTTC	5 cut(s)	199, 382, 682, 868, 1025
HpyCH4III	ACNGT	4 cut(s)	232, 566, 638, 1051
HpyCH4IV	ACGT	3 cut(s)	325, 412, 502
HpyCH4V	TGCA	3 cut(s)	88, 410, 515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 40, 136, 407
HpyF3I	CTNAG	4 cut(s)	525, 581, 609, 936
HpySE526I	ACGT	3 cut(s)	325, 412, 502
Hsp92II	CATG	6 cut(s)	224, 298, 464, 476, 1001, 1016
Kpn2I	TCCGGA	1 cut(s)	835
Kzo9I	GATC	5 cut(s)	60, 301, 358, 612, 1018
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	432
Lsp1109I	GCAGC	2 cut(s)	249, 589
MaeII	ACGT	3 cut(s)	325, 412, 502
MaeIII	GTNAC	2 cut(s)	290, 566
MalI	GATC	5 cut(s)	62, 303, 360, 614, 1020
MboI	GATC	5 cut(s)	60, 301, 358, 612, 1018
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	2 cut(s)	466, 597
MlyI	GAGTC	1 cut(s)	995
MmeI	TCCRAC	1 cut(s)	153
MroI	TCCGGA	1 cut(s)	835
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	5 cut(s)	44, 56, 131, 836, 1042
MunI	CAATTG	1 cut(s)	597
MwoI	GCNNNNNNNGC	4 cut(s)	11, 40, 136, 407
NdeII	GATC	5 cut(s)	60, 301, 358, 612, 1018
NlaIII	CATG	6 cut(s)	224, 298, 464, 476, 1001, 1016
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	2 cut(s)	224, 298
PciSI	GCTCTTC	1 cut(s)	28
PfeI	GAWTC	8 cut(s)	176, 617, 650, 779, 791, 800, 866, 893
PkrI	GCNGC	2 cut(s)	239, 604
PleI	GAGTC	1 cut(s)	995
PpsI	GAGTC	1 cut(s)	995
Ppu21I	YACGTR	1 cut(s)	503
Psp124BI	GAGCTC	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	4 cut(s)	277, 547, 739, 770
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	489
SacI	GAGCTC	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	238, 603
Sau3AI	GATC	5 cut(s)	60, 301, 358, 612, 1018
Sau96I	GGNCC	4 cut(s)	277, 547, 739, 770
SchI	GAGTC	1 cut(s)	995
SduI	GDGCHC	1 cut(s)	23
SinI	GGWCC	3 cut(s)	277, 547, 739
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	2 cut(s)	466, 597
SsiI	CCGC	3 cut(s)	5, 41, 821
SstI	GAGCTC	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	4 cut(s)	232, 566, 638, 1051
TaiI	ACGT	3 cut(s)	328, 415, 505
TaqI	TCGA	3 cut(s)	99, 167, 615
TasI	AATT	2 cut(s)	466, 597
TfiI	GAWTC	8 cut(s)	176, 617, 650, 779, 791, 800, 866, 893
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	237, 602
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	9 cut(s)	489, 580, 792, 804, 906, 921, 963, 996, 1044
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	3 cut(s)	277, 547, 739
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	2 cut(s)	224, 298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.