Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Forward (+)

4948393 .. 4953504

Gene Structure 5112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0039600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATGTTTAAAGACAGGAATCTGGTTACACAGCTTGTTAGAAGGGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTGCTGACACTCCAAGGCTCGGGCGCAGGGACGCTGATATCAAGAACAGGTTTACTATGACACCAAGTTTGACATTGAAAAACTTTGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCATATGTTGCTGGACTATTTGCCCGCTCTCTCAGCTGGAAGTGGGCGGTAAAGGATCGGAAATGGTATACCCAACAACAACTTGACGAGGTGCGCATTGAAGTAGCCGACTACTTACAGACTGCTGTAGATTCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

118

Amino Acids

13.6

Weight (kDa)

8.96

Isoelectric Point (pI)

19.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	2 - 86	5.1e-15	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	311
AccBSI	CCGCTC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	284
AciI	CCGC	2 cut(s)	241, 263
AclWI	GGATC	2 cut(s)	183, 279
AcsI	RAATTY	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	157, 167, 317
AluBI	AGCT	2 cut(s)	34, 252
AluI	AGCT	2 cut(s)	34, 252
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	183, 279
Ama87I	CYCGRG	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	130, 162
AspLEI	GCGC	2 cut(s)	105, 312
AvaI	CYCGRG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	355
BfmI	CTRYAG	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	92
BseJI	GATNNNNATC	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	39, 262
BsiHKCI	CYCGRG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	175, 271
BspACI	CCGC	2 cut(s)	241, 263
BspCNI	CTCAG	2 cut(s)	40, 261
BspPI	GGATC	2 cut(s)	183, 279
BspTNI	GGTCTC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	175, 271
BssNAI	GTATAC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	92
Bst1107I	GTATAC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	48, 248
BstHHI	GCGC	2 cut(s)	105, 312
BstKTI	GATC	2 cut(s)	178, 274
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	175, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 249
BstSFI	CTRYAG	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BstZ17I	GTATAC	1 cut(s)	285
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	2 cut(s)	105, 312
CseI	GACGC	1 cut(s)	119
CviJI	RGCY	6 cut(s)	34, 47, 56, 97, 252, 323
CviKI_1	RGCY	6 cut(s)	34, 47, 56, 97, 252, 323
DdeI	CTNAG	2 cut(s)	48, 248
DpnI	GATC	2 cut(s)	177, 273
DpnII	GATC	2 cut(s)	175, 271
DraI	TTTAAA	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	98
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaiI	YATR	4 cut(s)	137, 220, 222, 285
FaqI	GGGAC	1 cut(s)	122
FauI	CCCGC	1 cut(s)	248
FauNDI	CATATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	284
FspAI	RTGCGCAY	1 cut(s)	311
FspBI	CTAG	1 cut(s)	355
FspI	TGCGCA	1 cut(s)	311
GlaI	GCGC	2 cut(s)	104, 311
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	2 cut(s)	105, 312
Hin6I	GCGC	2 cut(s)	103, 310
HinP1I	GCGC	2 cut(s)	103, 310
HinfI	GANTC	3 cut(s)	19, 203, 347
Hpy166II	GTNNAC	2 cut(s)	132, 285
Hpy188I	TCNGA	2 cut(s)	276, 352
Hpy188III	TCNNGA	2 cut(s)	121, 207
Hpy8I	GTNNAC	2 cut(s)	132, 285
HpyAV	CCTTC	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 249
HpyF3I	CTNAG	2 cut(s)	48, 248
HspAI	GCGC	2 cut(s)	103, 310
Kzo9I	GATC	2 cut(s)	175, 271
LpnPI	CCDG	7 cut(s)	8, 42, 91, 112, 192, 213, 238
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	25, 59
MalI	GATC	2 cut(s)	177, 273
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	2 cut(s)	175, 271
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	1 cut(s)	169
MnlI	CCTC	3 cut(s)	45, 86, 298
MseI	TTAA	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	53, 249
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	2 cut(s)	175, 271
NsbI	TGCGCA	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	19, 203, 347
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	175, 271
SetI	ASST	4 cut(s)	36, 131, 254, 309
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	2 cut(s)	241, 263
SspMI	CTAG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	92
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	3 cut(s)	19, 203, 347
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	85
TspRI	CASTG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	284
XspI	CTAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.