Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Forward (+)

24949531 .. 24953114

Gene Structure 3584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG159500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCGGTGGTGGGCGAAAGCTCTTCGGCACCGCCGGAACAGAAGCCGGTGATCGTTAGGGTCAAGCGCAAAGCCAACCAGTCTCCAATCGACGCTTTCTGGCTCGAAATCAATGAGAGGCCACCCAAGCGTCCACTTTTAGATTTGGCCAACCTTTCACTCTCTGATTCATCTCCAAAAGCAGCAGCAGAAGAATTGAAGGCGAAGAAGATTTTCGTGCAGCATGTAGAGACTGTAAGCAGCTTTGACACCACTTTTGACATTGTCAAATCATTTGTGGAACCTACTACGGATCAAGTGTCTGAAAGTAAAACAAAGAGTGAAGAACGGAGACACTCTTTAAAAAAGGACAATAAACAAGAGCAGATTTTGTCTAAAGCCAGACAGACGCAACAGGTTGTAGCAAAAAATGCCCGTTTTGAACAAATATGGAGGAGCCGAAAGGGAAAGACAGAAGAATCCGATAAATTACAGGAAATGTGTCATTTCTATGATGTTCTTCGTGTTGATGCCGATGAAAGATCTAATGAACTGAAACAACAGGAAGAGTTATCTTTGGAGGACCAGAGGATTTTGCAGAGTTACTTGCCTCTACTCAGAGAATTCATCCCTAGTGCGGCTTTAGAGGTTGAATCAGATTTGCATGCTCAAAAACGAGAATCTGAAGATGAGTATGTATATGATGTCTATGCTGTGAATGATGAAATGGATATAGCGGATGAAGATTCTTCCCACCCATTTCCTTTAGTGCAAGTTGATGATGAGGATTTCTATGATGTGCCTGATGAATCCGAACATGACACTGAGGATTCAAATGATGAAAACAATCCAAATTTTGATTACCCGGATGAAGAATCTGAAGATGAAGAAGAGGAATCGGACGATGAAGCATCTGATAATGAATCAAAAGATGAGAGTGCCAGTGACAGATCCTTAGAATCTAAGGATTTAGAGGAACATGTCATTTCAGGAGATGATCTTTCTTTGGATTATGATGATGGCGGTGATGATGAGGATGATGGTGAAAACTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

345

Amino Acids

39.59

Weight (kDa)

4.24

Isoelectric Point (pI)

70.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AciI	CCGC	5 cut(s)	5, 32, 617, 716, 1002
AclWI	GGATC	2 cut(s)	300, 924
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	602, 832
AcuI	CTGAAG	2 cut(s)	684, 879
AfiI	CCNNNNNNNGG	1 cut(s)	616
AflIII	ACRYGT	1 cut(s)	958
AgsI	TTSAA	4 cut(s)	199, 422, 632, 813
AluBI	AGCT	2 cut(s)	21, 243
AluI	AGCT	2 cut(s)	21, 243
Alw26I	GTCTC	3 cut(s)	87, 224, 325
AlwI	GGATC	2 cut(s)	300, 924
AoxI	GGCC	2 cut(s)	119, 147
ApeKI	GCWGC	4 cut(s)	182, 185, 220, 240
ApoI	RAATTY	2 cut(s)	602, 832
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	562
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	3 cut(s)	61, 1016, 1034
AvaII	GGWCC	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	28
BbvI	GCAGC	4 cut(s)	194, 197, 232, 252
BccI	CCATC	2 cut(s)	992, 1013
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	3 cut(s)	87, 224, 325
BfaI	CTAG	1 cut(s)	612
BglII	AGATCT	1 cut(s)	521
BisI	GCNGC	5 cut(s)	183, 186, 221, 241, 618
BlsI	GCNGC	5 cut(s)	184, 187, 222, 242, 619
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	3 cut(s)	30, 282, 437
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	2 cut(s)	499, 899
BpuMI	CCSGG	1 cut(s)	845
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	3 cut(s)	79, 921, 1034
BseGI	GGATG	5 cut(s)	606, 724, 853, 1021, 1038
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	610, 795
BseNI	ACTGG	3 cut(s)	79, 921, 1034
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	4 cut(s)	194, 197, 232, 252
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	121, 149
BshNI	GGYRCC	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	35, 47, 845
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	3 cut(s)	87, 224, 325
BsnI	GGCC	2 cut(s)	121, 149
Bsp143I	GATC	5 cut(s)	51, 292, 521, 929, 976
BspACI	CCGC	5 cut(s)	5, 32, 617, 716, 1002
BspANI	GGCC	2 cut(s)	121, 149
BspCNI	CTCAG	2 cut(s)	609, 796
BspLI	GGNNCC	3 cut(s)	30, 282, 437
BspPI	GGATC	2 cut(s)	300, 924
BspQI	GCTCTTC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	3 cut(s)	79, 921, 1034
BssAI	RCCGGY	1 cut(s)	46
BssMI	GATC	5 cut(s)	51, 292, 521, 929, 976
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	3 cut(s)	28, 540, 864
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	4 cut(s)	596, 804, 934, 942
BstF5I	GGATG	5 cut(s)	606, 724, 853, 1021, 1038
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	5 cut(s)	54, 295, 524, 932, 979
BstMAI	GTCTC	3 cut(s)	87, 224, 325
BstMBI	GATC	5 cut(s)	51, 292, 521, 929, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 410
BstNSI	RCATGY	3 cut(s)	227, 647, 962
BstSCI	CCNGG	1 cut(s)	843
BstV1I	GCAGC	4 cut(s)	194, 197, 232, 252
BstX2I	RGATCY	2 cut(s)	521, 929
BstYI	RGATCY	2 cut(s)	521, 929
BsuRI	GGCC	2 cut(s)	121, 149
BtsCI	GGATG	5 cut(s)	606, 724, 853, 1021, 1038
BtsIMutI	CAGTG	2 cut(s)	801, 928
Cac8I	GCNNGC	1 cut(s)	645
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	562
CseI	GACGC	3 cut(s)	101, 119, 397
CviAII	CATG	4 cut(s)	224, 644, 797, 959
DdeI	CTNAG	4 cut(s)	596, 804, 934, 942
DpnI	GATC	5 cut(s)	53, 294, 523, 931, 978
DpnII	GATC	5 cut(s)	51, 292, 521, 929, 976
DraI	TTTAAA	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	3 cut(s)	28, 540, 864
EarI	CTCTTC	3 cut(s)	28, 540, 864
Eco47I	GGWCC	1 cut(s)	562
Eco57I	CTGAAG	2 cut(s)	684, 879
EcoRI	GAATTC	1 cut(s)	602
FaeI	CATG	4 cut(s)	227, 647, 800, 962
FatI	CATG	4 cut(s)	223, 643, 796, 958
Fnu4HI	GCNGC	5 cut(s)	183, 186, 221, 241, 618
FokI	GGATG	4 cut(s)	593, 731, 860, 1028
Fsp4HI	GCNGC	5 cut(s)	183, 186, 221, 241, 618
FspBI	CTAG	1 cut(s)	612
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	5 cut(s)	183, 186, 221, 241, 618
HaeIII	GGCC	2 cut(s)	121, 149
HapII	CCGG	3 cut(s)	35, 47, 845
HgaI	GACGC	3 cut(s)	101, 119, 397
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	227, 647, 800, 962
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HpaII	CCGG	3 cut(s)	35, 47, 845
HphI	GGTGA	3 cut(s)	61, 1016, 1034
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188III	TCNNGA	1 cut(s)	969
Hpy8I	GTNNAC	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	220, 577, 643, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 410
HpyF3I	CTNAG	4 cut(s)	596, 804, 934, 942
Hsp92II	CATG	4 cut(s)	227, 647, 800, 962
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	51, 292, 521, 929, 976
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	435
Lsp1109I	GCAGC	4 cut(s)	194, 197, 232, 252
LweI	GCATC	2 cut(s)	499, 899
MaeI	CTAG	1 cut(s)	612
MaeIII	GTNAC	2 cut(s)	581, 923
MalI	GATC	5 cut(s)	53, 294, 523, 931, 978
MboI	GATC	5 cut(s)	51, 292, 521, 929, 976
MflI	RGATCY	2 cut(s)	521, 929
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	4 cut(s)	194, 467, 602, 832
MluNI	TGGCCA	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	3 cut(s)	35, 47, 845
MspR9I	CCNGG	1 cut(s)	845
MwoI	GCNNNNNNNGC	2 cut(s)	127, 410
NciI	CCSGG	1 cut(s)	845
NdeII	GATC	5 cut(s)	51, 292, 521, 929, 976
NlaIII	CATG	4 cut(s)	227, 647, 800, 962
NlaIV	GGNNCC	3 cut(s)	30, 282, 437
NmuCI	GTSAC	1 cut(s)	923
NspI	RCATGY	3 cut(s)	227, 647, 962
PaeI	GCATGC	1 cut(s)	647
PciI	ACATGT	1 cut(s)	958
PciSI	GCTCTTC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	212
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	5 cut(s)	184, 187, 222, 242, 619
PscI	ACATGT	1 cut(s)	958
PspN4I	GGNNCC	3 cut(s)	30, 282, 437
PspPI	GGNCC	1 cut(s)	562
PsuI	RGATCY	2 cut(s)	521, 929
PsyI	GACNNNGTC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	5 cut(s)	183, 186, 221, 241, 618
Sau3AI	GATC	5 cut(s)	51, 292, 521, 929, 976
Sau96I	GGNCC	1 cut(s)	562
ScrFI	CCNGG	1 cut(s)	845
SetI	ASST	6 cut(s)	23, 156, 245, 286, 399, 630
SfaNI	GCATC	2 cut(s)	499, 899
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	489
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	4 cut(s)	194, 467, 602, 832
SsiI	CCGC	5 cut(s)	5, 32, 617, 716, 1002
SspMI	CTAG	1 cut(s)	612
StyD4I	CCNGG	1 cut(s)	843
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	90, 105
TasI	AATT	4 cut(s)	194, 467, 602, 832
TauI	GCSGC	1 cut(s)	620
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	2 cut(s)	808, 928
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	4 cut(s)	182, 185, 220, 240
Tsp45I	GTSAC	1 cut(s)	923
TspGWI	ACGGA	2 cut(s)	305, 343
TspRI	CASTG	2 cut(s)	808, 928
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	2 cut(s)	602, 832
XceI	RCATGY	3 cut(s)	227, 647, 962
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.