Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006239

Physical Location & Seq

Genomic Coordinates Reverse (-)

13085886 .. 13089287

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGAGAAGAGAGAAGACGAACAACAAAAGCGCGACGATTCTAGATTCAATCAAACACTCAAGAACGTCCAAGGGTTTCTTAAAGGTAGAAGTATTCCTGGTAAGGTATTGTTGACTAGGAGATCAGATCCTCCTCCATACCCAATCTCTCCAACATATCAACGGAGCTTATCTGAGAATGACGCCGGAAGAAATGAGCTATTCGAAAGTCCTGTTGAGGTGGAGGATCACAATTCAAGCAAGAAACATGATAATACATATGCTGGTAAGCTACGATCAAACTCTAGTGCTGAAAGGAGTGTGAAAGAAGTTCAAAACTTGAAGATAGGTGTTCGATCAAGTGACTCTGCTAGAGTTATGAAGTTCAACAAAGTGCTTTCAGAAACAACTGTCATATTAGAGAAACTGCGCGAGCTAGCATGGAATGGTGTACCACACTATATGCGGCCTGATGTCTGGCGGCTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGCTGTTCTGAGAAGAAAACGTCTTGAATATCTGGAATCTGTTGGCCAATTTTATGACCTTCCAGATTCCGAACGTTCTGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGACTGTCCGAGGACTGTACCAGATGTCAGTTTCTTTCAGCAAGAACAGGTGCAGAAATCACTGGAGCGTATTCTTTACACGTGGGCCATTAGACATCCAGCAAGCGGATATGTTCAGGGAATAAATGACCTGGTCACGCCCTTCCTAGTGATTTTCTTGTCAGAATATCTAGATGGCGGTGTAGACAGTTGGTCAATGGATGATCTATCTGCTGAAAAAGTCTCAGATGTAGAAGCGGATTGCTACTGGTGCTTAACAAAGCTCCTTGACGGTATGCAAGATCATTACACGTTTGCTCAACCTGGAATCCAGAGACTTGTGTTTAAGCTGAAGGAACTGGTCAGGCGTATCGATGAACCTGTTTCAAGACACATGGAAGAGCATGGGCTAGAGTTTCTTCAATTTGCTTTCCGGTGGTATAATTGTCTTCTGATTCGTGAGATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGTGGTCTGATGAGCTGAAGAAGCTAGATTTTCAAGAAATGGTAATGTTCCTGCAACACCTTCCGACACATAACTGGTCAGACCAAGAGCTCGAAATGGTTTTGTCAAGAGCTTACATGTGGCATAGTATGTTCAATAATTCCCCAAACCATTTGGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

440

Amino Acids

51.51

Weight (kDa)

5.51

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	148 - 392	3.6e-47	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	284 - 406	1.2e-07	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30710
fragaria_vesca	FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760
malus_domestica	MD03G1229700.v1.1 MD04G1046900.v1.1 MD11G1250200.v1.1
prunus_persica	Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.4G179600_v2.0.a1 Prupe.4G179600_v2.0.a1
pyrus_communis	pycom03g17730 pycom04g04070
rosa_chinensis	RchiOBHm_Chr5g0033161
rosa_laevigata	RLG00000033452
rosa_multiflora	Rmu_sc0009377.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046810
rosa_rugosa	Rorug05G0137100
rosa_samantha	Rh5AG228900 Rh5BG230000 Rh5DG234700
rosa_wichuraiana	Rw5G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	801
AccII	CGCG	2 cut(s)	33, 411
AciI	CCGC	5 cut(s)	445, 460, 723, 795, 854
AclI	AACGTT	1 cut(s)	577
AclWI	GGATC	3 cut(s)	122, 234, 1054
AcoI	YGGCCR	1 cut(s)	547
AcuI	CTGAAG	3 cut(s)	968, 1125, 1196
AcvI	CACGTG	1 cut(s)	699
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	432, 636
AfiI	CCNNNNNNNGG	1 cut(s)	722
AflIII	ACRYGT	3 cut(s)	696, 906, 1275
AhdI	GACNNNNNGTC	1 cut(s)	808
AjiI	CACGTC	1 cut(s)	1161
AjnI	CCWGG	4 cut(s)	97, 747, 919, 1128
Alw21I	GWGCWC	1 cut(s)	1251
Alw26I	GTCTC	2 cut(s)	844, 925
AlwI	GGATC	3 cut(s)	122, 234, 1054
AoxI	GGCC	3 cut(s)	446, 547, 702
AspLEI	GCGC	2 cut(s)	33, 411
AspS9I	GGNCC	1 cut(s)	702
AsuII	TTCGAA	1 cut(s)	204
AsuNHI	GCTAGC	3 cut(s)	415, 1145, 1316
BalI	TGGCCA	1 cut(s)	549
BanII	GRGCYC	1 cut(s)	1251
BbrPI	CACGTG	1 cut(s)	699
BbsI	GAAGAC	2 cut(s)	21, 1037
Bbv12I	GWGCWC	1 cut(s)	1251
BccI	CCATC	1 cut(s)	785
BciT130I	CCWGG	4 cut(s)	99, 749, 921, 1130
BcoDI	GTCTC	2 cut(s)	844, 925
BisI	GCNGC	2 cut(s)	446, 461
BlsI	GCNGC	2 cut(s)	447, 462
Bme1390I	CCNGG	4 cut(s)	99, 749, 921, 1130
BmeRI	GACNNNNNGTC	1 cut(s)	808
BmgBI	CACGTC	1 cut(s)	1161
BmgT120I	GGNCC	1 cut(s)	702
BmrFI	CCNGG	4 cut(s)	99, 749, 921, 1130
BmsI	GCATC	1 cut(s)	1102
BmtI	GCTAGC	3 cut(s)	419, 1149, 1320
BpiI	GAAGAC	2 cut(s)	21, 1037
BpmI	CTGGAG	1 cut(s)	701
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	969
BsaAI	YACGTR	1 cut(s)	699
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	70, 626
BsaWI	WCCGGW	1 cut(s)	1029
Bsc4I	CCNNNNNNNGG	1 cut(s)	722
Bse1I	ACTGG	4 cut(s)	684, 869, 960, 1238
BseBI	CCWGG	4 cut(s)	99, 749, 921, 1130
BseCI	ATCGAT	1 cut(s)	969
BseDI	CCNNGG	2 cut(s)	70, 626
BseGI	GGATG	2 cut(s)	712, 823
BseLI	CCNNNNNNNGG	1 cut(s)	722
BseMII	CTCAG	3 cut(s)	165, 503, 855
BseNI	ACTGG	4 cut(s)	684, 869, 960, 1238
BseRI	GAGGAG	1 cut(s)	123
BsgI	GTGCAG	1 cut(s)	689
Bsh1236I	CGCG	2 cut(s)	33, 411
BshFI	GGCC	3 cut(s)	448, 549, 704
BshVI	ATCGAT	1 cut(s)	969
BsiHKAI	GWGCWC	1 cut(s)	1251
BsiSI	CCGG	2 cut(s)	186, 1030
BslFI	GGGAC	1 cut(s)	1103
BslI	CCNNNNNNNGG	1 cut(s)	722
BsmAI	GTCTC	2 cut(s)	844, 925
BsmFI	GGGAC	1 cut(s)	1103
BsnI	GGCC	3 cut(s)	448, 549, 704
Bsp119I	TTCGAA	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	1251
Bsp143I	GATC	9 cut(s)	122, 127, 226, 275, 335, 591, 820, 898, 1059
BspACI	CCGC	5 cut(s)	445, 460, 723, 795, 854
BspANI	GGCC	3 cut(s)	448, 549, 704
BspCNI	CTCAG	3 cut(s)	166, 504, 854
BspDI	ATCGAT	1 cut(s)	969
BspFNI	CGCG	2 cut(s)	33, 411
BspOI	GCTAGC	3 cut(s)	419, 1149, 1320
BspPI	GGATC	3 cut(s)	122, 234, 1054
BspQI	GCTCTTC	1 cut(s)	990
BspT104I	TTCGAA	1 cut(s)	204
BsrI	ACTGG	4 cut(s)	684, 869, 960, 1238
BssECI	CCNNGG	2 cut(s)	70, 626
BssMI	GATC	9 cut(s)	122, 127, 226, 275, 335, 591, 820, 898, 1059
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	4 cut(s)	99, 749, 921, 1130
Bst4CI	ACNGT	5 cut(s)	391, 623, 634, 806, 890
Bst6I	CTCTTC	2 cut(s)	2, 990
BstACI	GRCGYC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	699
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	5 cut(s)	413, 417, 721, 1147, 1318
BstDEI	CTNAG	3 cut(s)	174, 512, 841
BstF5I	GGATG	2 cut(s)	712, 823
BstFNI	CGCG	2 cut(s)	33, 411
BstHHI	GCGC	2 cut(s)	33, 411
BstKTI	GATC	9 cut(s)	125, 130, 229, 278, 338, 594, 823, 901, 1062
BstMAI	GTCTC	2 cut(s)	844, 925
BstMBI	GATC	9 cut(s)	122, 127, 226, 275, 335, 591, 820, 898, 1059
BstMWI	GCNNNNNNNGC	2 cut(s)	867, 1180
BstNI	CCWGG	4 cut(s)	99, 749, 921, 1130
BstNSI	RCATGY	1 cut(s)	1279
BstSCI	CCNGG	4 cut(s)	97, 747, 919, 1128
BstUI	CGCG	2 cut(s)	33, 411
BstV2I	GAAGAC	2 cut(s)	21, 1037
BstX2I	RGATCY	2 cut(s)	127, 1059
BstYI	RGATCY	2 cut(s)	127, 1059
Bsu15I	ATCGAT	1 cut(s)	969
BsuRI	GGCC	3 cut(s)	448, 549, 704
BsuTUI	ATCGAT	1 cut(s)	969
BtrI	CACGTC	1 cut(s)	1161
BtsCI	GGATG	2 cut(s)	712, 823
BtsIMutI	CAGTG	1 cut(s)	677
Cac8I	GCNNGC	5 cut(s)	413, 417, 721, 1147, 1318
CfoI	GCGC	2 cut(s)	33, 411
Cfr13I	GGNCC	1 cut(s)	702
ClaI	ATCGAT	1 cut(s)	969
CseI	GACGC	1 cut(s)	191
CsiI	ACCWGGT	1 cut(s)	747
Csp6I	GTAC	2 cut(s)	431, 635
CviAII	CATG	5 cut(s)	248, 420, 991, 1001, 1276
CviQI	GTAC	2 cut(s)	431, 635
DdeI	CTNAG	3 cut(s)	174, 512, 841
DpnI	GATC	9 cut(s)	124, 129, 228, 277, 337, 593, 822, 900, 1061
DpnII	GATC	9 cut(s)	122, 127, 226, 275, 335, 591, 820, 898, 1059
DriI	GACNNNNNGTC	1 cut(s)	808
EaeI	YGGCCR	1 cut(s)	547
Eam1104I	CTCTTC	2 cut(s)	2, 990
Eam1105I	GACNNNNNGTC	1 cut(s)	808
EarI	CTCTTC	2 cut(s)	2, 990
Ecl136II	GAGCTC	1 cut(s)	1249
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	1251
Eco53kI	GAGCTC	1 cut(s)	1249
Eco57I	CTGAAG	3 cut(s)	968, 1125, 1196
Eco72I	CACGTG	1 cut(s)	699
EcoICRI	GAGCTC	1 cut(s)	1249
EcoRII	CCWGG	4 cut(s)	97, 747, 919, 1128
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	1251
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	5 cut(s)	251, 423, 994, 1004, 1279
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	1103
FatI	CATG	5 cut(s)	247, 419, 990, 1000, 1275
FauNDI	CATATG	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	2 cut(s)	446, 461
FokI	GGATG	2 cut(s)	699, 830
FriOI	GRGCYC	1 cut(s)	1251
Fsp4HI	GCNGC	2 cut(s)	446, 461
GlaI	GCGC	2 cut(s)	32, 410
GluI	GCNGC	2 cut(s)	446, 461
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	3 cut(s)	448, 549, 704
HapII	CCGG	2 cut(s)	186, 1030
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	33, 411
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	251, 423, 994, 1004, 1279
Hin6I	GCGC	2 cut(s)	31, 409
HinP1I	GCGC	2 cut(s)	31, 409
HincII	GTYRAC	2 cut(s)	114, 619
HindII	GTYRAC	2 cut(s)	114, 619
HinfI	GANTC	7 cut(s)	38, 45, 344, 539, 569, 924, 1051
HpaII	CCGG	2 cut(s)	186, 1030
Hpy166II	GTNNAC	4 cut(s)	114, 431, 619, 802
Hpy8I	GTNNAC	4 cut(s)	114, 431, 619, 802
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	6 cut(s)	492, 572, 769, 943, 1100, 1229
HpyCH4III	ACNGT	5 cut(s)	391, 623, 634, 806, 890
HpyCH4IV	ACGT	6 cut(s)	66, 523, 577, 698, 908, 1160
HpyCH4V	TGCA	4 cut(s)	479, 670, 895, 1213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	867, 1180
HpyF3I	CTNAG	3 cut(s)	174, 512, 841
HpySE526I	ACGT	6 cut(s)	66, 523, 577, 698, 908, 1160
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	251, 423, 994, 1004, 1279
HspAI	GCGC	2 cut(s)	31, 409
Kzo9I	GATC	9 cut(s)	122, 127, 226, 275, 335, 591, 820, 898, 1059
LguI	GCTCTTC	1 cut(s)	990
LmnI	GCTCC	3 cut(s)	165, 682, 885
LweI	GCATC	1 cut(s)	1102
MabI	ACCWGGT	1 cut(s)	747
MaeII	ACGT	6 cut(s)	66, 523, 577, 698, 908, 1160
MaeIII	GTNAC	2 cut(s)	341, 751
MalI	GATC	9 cut(s)	124, 129, 228, 277, 337, 593, 822, 900, 1061
MboI	GATC	9 cut(s)	122, 127, 226, 275, 335, 591, 820, 898, 1059
MboII	GAAGA	9 cut(s)	19, 26, 201, 334, 528, 1007, 1007, 1037, 1189
MflI	RGATCY	2 cut(s)	127, 1059
MhlI	GDGCHC	1 cut(s)	1251
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	6 cut(s)	232, 487, 551, 1019, 1039, 1297
MluNI	TGGCCA	1 cut(s)	549
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	2 cut(s)	176, 1247
MnlI	CCTC	6 cut(s)	141, 144, 211, 217, 496, 621
Mox20I	TGGCCA	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	3 cut(s)	81, 872, 942
Msp20I	TGGCCA	1 cut(s)	549
MspI	CCGG	2 cut(s)	186, 1030
MspR9I	CCNGG	4 cut(s)	99, 749, 921, 1130
MvaI	CCWGG	4 cut(s)	99, 749, 921, 1130
MvnI	CGCG	2 cut(s)	33, 411
MwoI	GCNNNNNNNGC	2 cut(s)	867, 1180
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	9 cut(s)	122, 127, 226, 275, 335, 591, 820, 898, 1059
NheI	GCTAGC	3 cut(s)	415, 1145, 1316
NlaIII	CATG	5 cut(s)	251, 423, 994, 1004, 1279
NmuCI	GTSAC	2 cut(s)	341, 751
NspI	RCATGY	1 cut(s)	1279
NspV	TTCGAA	1 cut(s)	204
PciI	ACATGT	1 cut(s)	1275
PciSI	GCTCTTC	1 cut(s)	990
PfeI	GAWTC	6 cut(s)	38, 45, 539, 569, 924, 1051
PflFI	GACNNNGTC	2 cut(s)	749, 1162
PkrI	GCNGC	2 cut(s)	447, 462
PleI	GAGTC	1 cut(s)	338
PmaCI	CACGTG	1 cut(s)	699
PmlI	CACGTG	1 cut(s)	699
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	699
PscI	ACATGT	1 cut(s)	1275
Psp124BI	GAGCTC	1 cut(s)	1251
Psp1406I	AACGTT	1 cut(s)	577
Psp6I	CCWGG	4 cut(s)	97, 747, 919, 1128
PspCI	CACGTG	1 cut(s)	699
PspGI	CCWGG	4 cut(s)	97, 747, 919, 1128
PspPI	GGNCC	1 cut(s)	702
PsuI	RGATCY	2 cut(s)	127, 1059
PsyI	GACNNNGTC	2 cut(s)	749, 1162
RsaI	GTAC	2 cut(s)	432, 636
RsaNI	GTAC	2 cut(s)	431, 635
SacI	GAGCTC	1 cut(s)	1251
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	3 cut(s)	81, 872, 942
SatI	GCNGC	2 cut(s)	446, 461
Sau3AI	GATC	9 cut(s)	122, 127, 226, 275, 335, 591, 820, 898, 1059
Sau96I	GGNCC	1 cut(s)	702
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	4 cut(s)	99, 749, 921, 1130
SduI	GDGCHC	1 cut(s)	1251
SexAI	ACCWGGT	1 cut(s)	747
SfaNI	GCATC	1 cut(s)	1102
SfuI	TTCGAA	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	6 cut(s)	232, 487, 551, 1019, 1039, 1297
SsiI	CCGC	5 cut(s)	445, 460, 723, 795, 854
SstI	GAGCTC	1 cut(s)	1251
StyD4I	CCNGG	4 cut(s)	97, 747, 919, 1128
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	5 cut(s)	391, 623, 634, 806, 890
TaiI	ACGT	6 cut(s)	69, 526, 580, 701, 911, 1163
TaqI	TCGA	5 cut(s)	204, 334, 969, 1081, 1251
TasI	AATT	6 cut(s)	232, 487, 551, 1019, 1039, 1297
TauI	GCSGC	2 cut(s)	448, 463
TfiI	GAWTC	6 cut(s)	38, 45, 539, 569, 924, 1051
Tru1I	TTAA	3 cut(s)	81, 872, 942
Tru9I	TTAA	3 cut(s)	81, 872, 942
TscAI	CASTG	1 cut(s)	684
TseFI	GTSAC	2 cut(s)	341, 751
Tsp45I	GTSAC	2 cut(s)	341, 751
TspDTI	ATGAA	2 cut(s)	374, 987
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	684
Tth111I	GACNNNGTC	2 cut(s)	749, 1162
XbaI	TCTAGA	2 cut(s)	41, 787
XceI	RCATGY	1 cut(s)	1279
XmiI	GTMKAC	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.