Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006239

Physical Location & Seq

Genomic Coordinates Forward (+)

5447494 .. 5454735

Gene Structure 7242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1046900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAACAACAACAGCAACCAAAACAACAACAGAGAAGAAGAAAATCACTCCAAGGATGAAGGTTCTATCTCATCCCTCGATTCAACATTCAACCAAACGCTCCGAAATGTTCGAGGGTTGCTCAAAGGGCGTAGCATTCCTGGTAAAGTGTTACTGAGTCGGAGATCAGACCCGCTAGATCAGTCAAACATCCAAGACCCCTCTCCAAATTATGAAGGGAGCTTCTCATACAATGAATCTGAAACAAGCGATCGTATGGCCAACGAACTGGAGGAAGAAGTGCAGAGATCGATCAAGCCAAACAATAATGAAAATTCAAATAGCCTAAATTCATCCACTTCCGATACTGAGAATACTTCCAAAGAAGCTCAGAAATCCACCACGGGTGCTAGATGTACTGATTCTGCTAGAGTTGCAAAGTTCACAAAGGTTCTCTCAGGGACAACAGTCATACTAGAGAAGTTGCGTGAGTTGTCTTGGAGTGGCATACCACCATATATGCGACCGGACATATGGAGGCTTCTTTTGGGATATGCACCACCTAATTCAGATAGAAGGGGGGGAGTTCTGAAAAGGAAGCGCCTCGAGTATCTTGATTGTGTCTCCCAGTACTATGACATTCCAGATTCTGAGCGCTCAGATGATGAGATAAACATGCTTCGCCAGATTGCTGTTGATTGCCCAAGAACAGTGCCAGATGTATCCTTTTTTCAGCAAGAACAAGTCCAGAAATCCTTGGAGCGGATCCTTTACACATGGGCCATTAGACATCCTGCAAGTGGATATGTTCAGGGAATAAATGATCTGGCTACTCCCTTTCTAGTGGTTTTCTTGTCAGAATACTTAGAAGGGAGTGTGGATAATTGGTCAATCTCCGATCTATCTCCCGATAAAATATCTTACGTTGAGGCTGATTGCTATTGGTGCCTATCAAAGTTACTCGATGGTATGCAAGATCATTACACATTTGCTCAGCCGGGAATCCAGAGGCTCGTGTTTAAGCTAAAGGAATTGGTCAGGCGGATTGATGAACCGGTATCTACACACATGGAGGAGCAAGGGCTAGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTTTAATACGGGAGATTCCTTTTGATCTCGTCACCCGCCTGTGGGATACCTATCTTGCTGAAGGAGATTCATTGCCAGATTTTCTTGTGTATATATTTGCCAGTTTTCTTTTAACGTGGTCAGATAAGCTTGTGAAGCTGGAGTTCCAAGAGTTGGTTATGTTTCTTCAACACCTTCCGACAGATAACTGGACTCACCAAGACCTAGAGATCGTGCTTTCAAGAGCGTTCGTGTGGCATAGTATGTTCAACAGCTCCCCTAGCCATTTAGCCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

460

Amino Acids

52.85

Weight (kDa)

4.95

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	167 - 408	8.7e-49	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	303 - 427	3.2e-10	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30710
fragaria_vesca	FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760
malus_domestica	MD03G1229700.v1.1 MD04G1046900.v1.1 MD11G1250200.v1.1
prunus_persica	Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.4G179600_v2.0.a1 Prupe.4G179600_v2.0.a1
pyrus_communis	pycom03g17730 pycom04g04070
rosa_chinensis	RchiOBHm_Chr5g0033161
rosa_laevigata	RLG00000033452
rosa_multiflora	Rmu_sc0009377.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046810
rosa_rugosa	Rorug05G0137100
rosa_samantha	Rh5AG228900 Rh5BG230000 Rh5DG234700
rosa_wichuraiana	Rw5G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	924
AccB7I	CCANNNNNTGG	1 cut(s)	1255
AccBSI	CCGCTC	1 cut(s)	742
AciI	CCGC	5 cut(s)	173, 742, 1021, 1087, 1138
AclWI	GGATC	2 cut(s)	739, 752
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	3 cut(s)	313, 328, 1067
AcuI	CTGAAG	1 cut(s)	1182
AfaI	GTAC	2 cut(s)	397, 611
AfeI	AGCGCT	1 cut(s)	635
AfiI	CCNNNNNNNGG	5 cut(s)	741, 779, 1143, 1144, 1255
AgeI	ACCGGT	1 cut(s)	1033
AgsI	TTSAA	8 cut(s)	84, 91, 318, 1076, 1096, 1271, 1323, 1351
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	7 cut(s)	222, 368, 1003, 1231, 1240, 1356, 1377
AluI	AGCT	7 cut(s)	222, 368, 1003, 1231, 1240, 1356, 1377
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	2 cut(s)	739, 752
AlwNI	CAGNNNCTG	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	584
Aor51HI	AGCGCT	1 cut(s)	635
AoxI	GGCC	2 cut(s)	258, 759
ApoI	RAATTY	3 cut(s)	313, 328, 1067
AsiGI	ACCGGT	1 cut(s)	1033
Asp700I	GAANNNNTTC	1 cut(s)	1071
AspLEI	GCGC	2 cut(s)	582, 636
AspS9I	GGNCC	1 cut(s)	759
AsuC2I	CCSGG	1 cut(s)	978
AsuHPI	GGTGA	2 cut(s)	1126, 1289
AvaI	CYCGRG	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	744
BanI	GGYRCC	1 cut(s)	924
BauI	CACGAG	1 cut(s)	992
BccI	CCATC	1 cut(s)	938
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	2 cut(s)	712, 1141
BcnI	CCSGG	1 cut(s)	978
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	8 cut(s)	176, 390, 408, 455, 821, 1064, 1307, 1362
BfoI	RGCGCY	2 cut(s)	583, 637
BfuI	GTATCC	2 cut(s)	712, 1141
BlpI	GCTNAGC	1 cut(s)	972
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	2 cut(s)	141, 978
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	759
BmiI	GGNNCC	2 cut(s)	746, 926
BmrFI	CCNGG	2 cut(s)	141, 978
BmrI	ACTGGG	1 cut(s)	601
BmuI	ACTGGG	1 cut(s)	601
BoxI	GACNNNNGTC	1 cut(s)	446
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	2 cut(s)	290, 1262
Bpu1102I	GCTNAGC	1 cut(s)	972
BpuMI	CCSGG	1 cut(s)	978
Bsa29I	ATCGAT	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	1152
BsaJI	CCNNGG	3 cut(s)	51, 381, 735
BsaWI	WCCGGW	2 cut(s)	505, 1033
Bsc4I	CCNNNNNNNGG	5 cut(s)	741, 779, 1143, 1144, 1255
Bse118I	RCCGGY	1 cut(s)	1033
Bse1I	ACTGG	4 cut(s)	273, 607, 1203, 1295
Bse3DI	GCAATG	1 cut(s)	1172
Bse8I	GATNNNNATC	1 cut(s)	1152
BseBI	CCWGG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	290
BseDI	CCNNGG	3 cut(s)	51, 381, 735
BseGI	GGATG	5 cut(s)	61, 71, 189, 332, 769
BseJI	GATNNNNATC	1 cut(s)	1152
BseLI	CCNNNNNNNGG	5 cut(s)	741, 779, 1143, 1144, 1255
BseMI	GCAATG	1 cut(s)	1172
BseMII	CTCAG	7 cut(s)	146, 339, 383, 450, 621, 651, 986
BseNI	ACTGG	4 cut(s)	273, 607, 1203, 1295
BseRI	GAGGAG	1 cut(s)	1067
BsgI	GTGCAG	1 cut(s)	302
Bsh1285I	CGRYCG	2 cut(s)	253, 506
BshFI	GGCC	2 cut(s)	260, 761
BshNI	GGYRCC	1 cut(s)	924
BshTI	ACCGGT	1 cut(s)	1033
BshVI	ATCGAT	1 cut(s)	290
BsiEI	CGRYCG	2 cut(s)	253, 506
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	3 cut(s)	506, 977, 1034
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	5 cut(s)	741, 779, 1143, 1144, 1255
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	260, 761
BsoBI	CYCGRG	1 cut(s)	584
Bsp1720I	GCTNAGC	1 cut(s)	972
BspACI	CCGC	5 cut(s)	173, 742, 1021, 1087, 1138
BspANI	GGCC	2 cut(s)	260, 761
BspCNI	CTCAG	7 cut(s)	147, 340, 382, 449, 622, 650, 985
BspDI	ATCGAT	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	746, 926
BspPI	GGATC	2 cut(s)	739, 752
BspT107I	GGYRCC	1 cut(s)	924
BsrBI	CCGCTC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	1172
BsrFI	RCCGGY	1 cut(s)	1033
BsrI	ACTGG	4 cut(s)	273, 607, 1203, 1295
BssAI	RCCGGY	1 cut(s)	1033
BssECI	CCNNGG	3 cut(s)	51, 381, 735
BssSI	CACGAG	1 cut(s)	992
BssT1I	CCWWGG	2 cut(s)	51, 735
Bst2BI	CACGAG	1 cut(s)	992
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	448, 691, 1100
BstC8I	GCNNGC	1 cut(s)	1375
BstDEI	CTNAG	8 cut(s)	155, 348, 369, 436, 630, 637, 844, 972
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	5 cut(s)	61, 71, 189, 332, 769
BstH2I	RGCGCY	2 cut(s)	583, 637
BstHHI	GCGC	2 cut(s)	582, 636
BstMAI	GTCTC	1 cut(s)	607
BstMCI	CGRYCG	2 cut(s)	253, 506
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 413, 924, 1237, 1362
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	658
BstPAI	GACNNNNGTC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	139, 976
BstX2I	RGATCY	1 cut(s)	744
BstXI	CCANNNNNNTGG	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	744
Bsu15I	ATCGAT	1 cut(s)	290
BsuI	GTATCC	2 cut(s)	712, 1141
BsuRI	GGCC	2 cut(s)	260, 761
BsuTUI	ATCGAT	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	5 cut(s)	61, 71, 189, 332, 769
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	1375
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	2 cut(s)	582, 636
Cfr10I	RCCGGY	1 cut(s)	1033
Cfr13I	GGNCC	1 cut(s)	759
ClaI	ATCGAT	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	396, 610
CspAI	ACCGGT	1 cut(s)	1033
CviAII	CATG	3 cut(s)	655, 756, 1048
CviQI	GTAC	2 cut(s)	396, 610
DdeI	CTNAG	8 cut(s)	155, 348, 369, 436, 630, 637, 844, 972
EaeI	YGGCCR	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	1036
Eco130I	CCWWGG	2 cut(s)	51, 735
Eco47III	AGCGCT	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	1182
Eco88I	CYCGRG	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	51, 735
ErhI	CCWWGG	2 cut(s)	51, 735
FaeI	CATG	3 cut(s)	658, 759, 1051
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	3 cut(s)	654, 755, 1047
FauI	CCCGC	2 cut(s)	180, 1145
FauNDI	CATATG	1 cut(s)	512
FokI	GGATG	5 cut(s)	58, 68, 176, 319, 756
FspBI	CTAG	8 cut(s)	176, 390, 408, 455, 821, 1064, 1307, 1362
GlaI	GCGC	2 cut(s)	581, 635
GsuI	CTGGAG	2 cut(s)	290, 1262
HaeII	RGCGCY	2 cut(s)	583, 637
HaeIII	GGCC	2 cut(s)	260, 761
HapII	CCGG	3 cut(s)	506, 977, 1034
HhaI	GCGC	2 cut(s)	582, 636
Hin1II	CATG	3 cut(s)	658, 759, 1051
Hin6I	GCGC	2 cut(s)	580, 634
HinP1I	GCGC	2 cut(s)	580, 634
HindIII	AAGCTT	1 cut(s)	1229
HinfI	GANTC	9 cut(s)	80, 157, 236, 401, 626, 981, 1117, 1169, 1294
HpaII	CCGG	3 cut(s)	506, 977, 1034
HphI	GGTGA	2 cut(s)	1126, 1289
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188III	TCNNGA	6 cut(s)	593, 623, 727, 887, 985, 1323
Hpy8I	GTNNAC	1 cut(s)	423
HpyAV	CCTTC	6 cut(s)	53, 209, 549, 842, 1157, 1286
HpyCH4III	ACNGT	3 cut(s)	448, 691, 1100
HpyCH4IV	ACGT	2 cut(s)	903, 1217
HpyCH4V	TGCA	5 cut(s)	283, 416, 536, 776, 952
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 413, 924, 1237, 1362
HpyF3I	CTNAG	8 cut(s)	155, 348, 369, 436, 630, 637, 844, 972
HpySE526I	ACGT	2 cut(s)	903, 1217
Hsp92II	CATG	3 cut(s)	658, 759, 1051
HspAI	GCGC	2 cut(s)	580, 634
LmnI	GCTCC	5 cut(s)	105, 219, 739, 1054, 1361
MaeI	CTAG	8 cut(s)	176, 390, 408, 455, 821, 1064, 1307, 1362
MaeII	ACGT	2 cut(s)	903, 1217
MaeIII	GTNAC	3 cut(s)	150, 936, 1132
MbiI	CCGCTC	1 cut(s)	742
MboII	GAAGA	5 cut(s)	47, 50, 287, 1064, 1259
MflI	RGATCY	1 cut(s)	744
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	8 cut(s)	208, 313, 328, 544, 862, 1010, 1067, 1076
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	166, 1288
MmeI	TCCRAC	2 cut(s)	140, 1304
MnlI	CCTC	9 cut(s)	86, 107, 211, 265, 510, 593, 901, 981, 1045
Mox20I	TGGCCA	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	1071
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	3 cut(s)	999, 1106, 1214
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	1089
MspI	CCGG	3 cut(s)	506, 977, 1034
MspR9I	CCNGG	2 cut(s)	141, 978
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	5 cut(s)	127, 413, 924, 1237, 1362
NciI	CCSGG	1 cut(s)	978
NdeI	CATATG	1 cut(s)	512
NlaIII	CATG	3 cut(s)	658, 759, 1051
NlaIV	GGNNCC	2 cut(s)	746, 926
NmuCI	GTSAC	1 cut(s)	1132
NspI	RCATGY	1 cut(s)	658
PaeR7I	CTCGAG	1 cut(s)	584
PctI	GAATGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	1071
PfeI	GAWTC	7 cut(s)	80, 236, 401, 626, 981, 1117, 1169
PflMI	CCANNNNNTGG	1 cut(s)	1255
PinAI	ACCGGT	1 cut(s)	1033
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	2 cut(s)	165, 1288
PpsI	GAGTC	2 cut(s)	165, 1288
PshAI	GACNNNNGTC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	746, 926
PspPI	GGNCC	1 cut(s)	759
PspXI	VCTCGAGB	1 cut(s)	584
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	744
PvuI	CGATCG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	397, 611
RsaNI	GTAC	2 cut(s)	396, 610
SaqAI	TTAA	3 cut(s)	999, 1106, 1214
Sau96I	GGNCC	1 cut(s)	759
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	2 cut(s)	166, 1288
ScrFI	CCNGG	2 cut(s)	141, 978
Sfr274I	CTCGAG	1 cut(s)	584
SlaI	CTCGAG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	8 cut(s)	208, 313, 328, 544, 862, 1010, 1067, 1076
SsiI	CCGC	5 cut(s)	173, 742, 1021, 1087, 1138
SspMI	CTAG	8 cut(s)	176, 390, 408, 455, 821, 1064, 1307, 1362
StyD4I	CCNGG	2 cut(s)	139, 976
StyI	CCWWGG	2 cut(s)	51, 735
TaaI	ACNGT	3 cut(s)	448, 691, 1100
TaiI	ACGT	2 cut(s)	906, 1220
TaqI	TCGA	5 cut(s)	78, 112, 290, 585, 942
TasI	AATT	8 cut(s)	208, 313, 328, 544, 862, 1010, 1067, 1076
TatI	WGTACW	2 cut(s)	395, 609
TfiI	GAWTC	7 cut(s)	80, 236, 401, 626, 981, 1117, 1169
Tru1I	TTAA	3 cut(s)	999, 1106, 1214
Tru9I	TTAA	3 cut(s)	999, 1106, 1214
TscAI	CASTG	1 cut(s)	696
TseFI	GTSAC	1 cut(s)	1132
Tsp45I	GTSAC	1 cut(s)	1132
TspDTI	ATGAA	8 cut(s)	17, 72, 228, 249, 321, 324, 1044, 1161
TspRI	CASTG	1 cut(s)	696
Van91I	CCANNNNNTGG	1 cut(s)	1255
XapI	RAATTY	3 cut(s)	313, 328, 1067
XceI	RCATGY	1 cut(s)	658
XhoI	CTCGAG	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	1071
XspI	CTAG	8 cut(s)	176, 390, 408, 455, 821, 1064, 1307, 1362
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.