Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006239

Physical Location & Seq

Genomic Coordinates Forward (+)

12924278 .. 12931158

Gene Structure 6881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGAGGAACAACAGCAACGACAACAAGAGCAATCAAAGCTCTGGTGGAGAAGACCATCACTCCCAAGAAAGTTCCATCTCAACCCCTGAATCAAGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTGCTCAAAGGTCGCAGTATGCCTGGTAAAGTATTGCTGACGAGGAGATCAGAGCTGGTAGATCAATCAAACACACAAGAACCCGCGCTAAATTATGCAAGGAGCTTCTCATACAATGATGCTGAAACAAGTGTTAGCATATCAAAGGCATTGGAGGAAGCATTTGAGAGCCCAAGTGAGCCGAACGCCAATGAAAGTGTAAATAAGTTAAAAATATCAACCTCGAATGTTGAGAATACTTCCAAAGGTCCTCAGAAATCCGTTATTGGTGCTAGAGCAACTGATTCTGCTCGAGTTATGAAGTTCACTAAGGTCCTTTCTGGGACCACAGTGATATTAGAGAAGTTGCGTGAGTTGGCTTGGAGTGGCATACCACCATATATGCGACCTGATGTGTGGAGGCTTCTTTTGGGATATGCACCATCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTCGAGTATCTTGACTGTGTTTCTCAATACTATGACATTCCAGATACTGAGCGTTCAGATGATGAGATAAACATGCTTCGTCAGATTTCTGTTGATTGCCCAAGAACCGTGCCGGATGTGTCTTTTTTTCAGCAAGAGCAAGTCCAGAAATCCTTGGAGCGCATCCTTTACACATGGGCAATTCGACATCCTGCAAGTGGATATGTTCAGGGAATAAATGATCTTGTTACTCCCTTTCTTGTGGTTTTCTTGTCAGAATACTTGGACGGTAGTGTGGATAGTTGGTCAATCTCTGATCTGTCTTCCGATCAAATATCTACAGTAGAAGCTGATTGCTATTGGTGCCTATCAAAGCTACTTGATGGTATGCAAGACCATTACACATTTGCTCAGCCAGGGATCCAGAGGCTTGTGTTCAAGCTAAAGGAATTGGTCAGGCGAATTGATGAACCTGTATCTAGACATGTGGAGGAGCAAGGGCTGGAATTTCTTCAGTTTGCTTTCCGGTGGTTCAACTGTCTTTTAATACGTGAGATTCCCTTCCAACTTATTTCCCGCCTGTGGGATACATATCTTGCTGAAGGAGATGCATTGCCAGATTTCCTTGTGTATATTTTTGCCAGTTTTCTTTTAACGTGGTCAGAGGAGCTCAAGAAGCTTGATTTCCAAGAGTTGGTCATGTTTCTTCAACACCTACCAACTCATAACTGGACTGACCAGGAACTTGAGATGGTGCTTTCAAGAGCTTTCATGTGGCACAGTATGTTTAACAGCTCTCCCAGACATTTAGCCACCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

464

Amino Acids

53.19

Weight (kDa)

5.31

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	170 - 413	9.6e-49	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	306 - 428	2.6e-08	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30710
fragaria_vesca	FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760
malus_domestica	MD03G1229700.v1.1 MD04G1046900.v1.1 MD11G1250200.v1.1
prunus_persica	Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.4G179600_v2.0.a1 Prupe.4G179600_v2.0.a1
pyrus_communis	pycom03g17730 pycom04g04070
rosa_chinensis	RchiOBHm_Chr5g0033161
rosa_laevigata	RLG00000033452
rosa_multiflora	Rmu_sc0009377.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046810
rosa_rugosa	Rorug05G0137100
rosa_samantha	Rh5AG228900 Rh5BG230000 Rh5DG234700
rosa_wichuraiana	Rw5G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	933
AccB7I	CCANNNNNTGG	1 cut(s)	1264
AccII	CGCG	1 cut(s)	212
AciI	CCGC	2 cut(s)	210, 1147
AclWI	GGATC	2 cut(s)	985, 998
AcsI	RAATTY	1 cut(s)	1076
AcuI	CTGAAG	2 cut(s)	1067, 1191
AfiI	CCNNNNNNNGG	4 cut(s)	788, 1152, 1153, 1264
AflIII	ACRYGT	1 cut(s)	1054
AgsI	TTSAA	6 cut(s)	100, 122, 1009, 1105, 1280, 1332
AjnI	CCWGG	3 cut(s)	148, 985, 1308
Alw21I	GWGCWC	1 cut(s)	1242
AlwI	GGATC	2 cut(s)	985, 998
AlwNI	CAGNNNCTG	1 cut(s)	638
Ama87I	CYCGRG	2 cut(s)	417, 593
ApoI	RAATTY	1 cut(s)	1076
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspLEI	GCGC	3 cut(s)	214, 591, 753
AspS9I	GGNCC	3 cut(s)	374, 439, 450
AvaI	CYCGRG	2 cut(s)	417, 593
AvaII	GGWCC	3 cut(s)	374, 439, 450
BamHI	GGATCC	1 cut(s)	990
BanI	GGYRCC	1 cut(s)	933
BanII	GRGCYC	2 cut(s)	299, 1242
BbsI	GAAGAC	2 cut(s)	57, 885
Bbv12I	GWGCWC	1 cut(s)	1242
BccI	CCATC	5 cut(s)	63, 83, 556, 947, 1315
BciT130I	CCWGG	3 cut(s)	150, 987, 1310
BciVI	GTATCC	1 cut(s)	1150
BfaI	CTAG	2 cut(s)	399, 1050
BfmI	CTRYAG	1 cut(s)	909
BfoI	RGCGCY	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	1150
BlpI	GCTNAGC	1 cut(s)	981
Bme1390I	CCNGG	3 cut(s)	150, 987, 1310
Bme18I	GGWCC	3 cut(s)	374, 439, 450
BmeT110I	CYCGRG	2 cut(s)	417, 593
BmgT120I	GGNCC	3 cut(s)	374, 439, 450
BmiI	GGNNCC	3 cut(s)	451, 935, 992
BmrFI	CCNGG	3 cut(s)	150, 987, 1310
BmsI	GCATC	3 cut(s)	235, 762, 1168
BpiI	GAAGAC	2 cut(s)	57, 885
Bpu1102I	GCTNAGC	1 cut(s)	981
BpuEI	CTTGAG	2 cut(s)	1226, 1337
BsaAI	YACGTR	1 cut(s)	1121
BsaBI	GATNNNNATC	1 cut(s)	1161
BsaJI	CCNNGG	2 cut(s)	744, 986
BsaWI	WCCGGW	1 cut(s)	1095
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	4 cut(s)	788, 1152, 1153, 1264
Bse118I	RCCGGY	1 cut(s)	1385
Bse1I	ACTGG	2 cut(s)	1212, 1304
Bse3DI	GCAATG	1 cut(s)	1181
Bse8I	GATNNNNATC	1 cut(s)	1161
BseBI	CCWGG	3 cut(s)	150, 987, 1310
BseDI	CCNNGG	2 cut(s)	744, 986
BseGI	GGATG	3 cut(s)	712, 753, 778
BseJI	GATNNNNATC	1 cut(s)	1161
BseLI	CCNNNNNNNGG	4 cut(s)	788, 1152, 1153, 1264
BseMI	GCAATG	1 cut(s)	1181
BseMII	CTCAG	4 cut(s)	124, 392, 630, 995
BseNI	ACTGG	2 cut(s)	1212, 1304
BseRI	GAGGAG	3 cut(s)	184, 1076, 1250
Bsh1236I	CGCG	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	933
BsiHKAI	GWGCWC	1 cut(s)	1242
BsiHKCI	CYCGRG	2 cut(s)	417, 593
BsiSI	CCGG	3 cut(s)	704, 1096, 1386
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	4 cut(s)	788, 1152, 1153, 1264
BsmFI	GGGAC	1 cut(s)	463
BsoBI	CYCGRG	2 cut(s)	417, 593
Bsp1286I	GDGCHC	2 cut(s)	299, 1242
Bsp143I	GATC	6 cut(s)	173, 187, 811, 886, 898, 990
Bsp1720I	GCTNAGC	1 cut(s)	981
BspACI	CCGC	2 cut(s)	210, 1147
BspCNI	CTCAG	4 cut(s)	123, 391, 631, 994
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	3 cut(s)	451, 935, 992
BspPI	GGATC	2 cut(s)	985, 998
BspT107I	GGYRCC	1 cut(s)	933
BsrDI	GCAATG	1 cut(s)	1181
BsrFI	RCCGGY	1 cut(s)	1385
BsrI	ACTGG	2 cut(s)	1212, 1304
BssAI	RCCGGY	1 cut(s)	1385
BssECI	CCNNGG	2 cut(s)	744, 986
BssMI	GATC	6 cut(s)	173, 187, 811, 886, 898, 990
BssT1I	CCWWGG	1 cut(s)	744
Bst2UI	CCWGG	3 cut(s)	150, 987, 1310
Bst4CI	ACNGT	7 cut(s)	457, 608, 700, 860, 913, 1109, 1352
BstBAI	YACGTR	1 cut(s)	1121
BstDEI	CTNAG	6 cut(s)	110, 378, 435, 578, 639, 981
BstF5I	GGATG	3 cut(s)	712, 753, 778
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	592
BstHHI	GCGC	3 cut(s)	214, 591, 753
BstKTI	GATC	6 cut(s)	176, 190, 814, 889, 901, 993
BstMBI	GATC	6 cut(s)	173, 187, 811, 886, 898, 990
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 933, 1246
BstNI	CCWGG	3 cut(s)	150, 987, 1310
BstNSI	RCATGY	2 cut(s)	667, 1058
BstSCI	CCNGG	3 cut(s)	148, 985, 1308
BstSFI	CTRYAG	1 cut(s)	909
BstUI	CGCG	1 cut(s)	212
BstV2I	GAAGAC	2 cut(s)	57, 885
BstX2I	RGATCY	1 cut(s)	990
BstYI	RGATCY	1 cut(s)	990
BsuI	GTATCC	1 cut(s)	1150
BtsCI	GGATG	3 cut(s)	712, 753, 778
BtsIMutI	CAGTG	1 cut(s)	462
CaiI	CAGNNNCTG	1 cut(s)	638
CfoI	GCGC	3 cut(s)	214, 591, 753
Cfr10I	RCCGGY	1 cut(s)	1385
Cfr13I	GGNCC	3 cut(s)	374, 439, 450
CviAII	CATG	5 cut(s)	664, 765, 1055, 1270, 1342
DdeI	CTNAG	6 cut(s)	110, 378, 435, 578, 639, 981
DpnI	GATC	6 cut(s)	175, 189, 813, 888, 900, 992
DpnII	GATC	6 cut(s)	173, 187, 811, 886, 898, 990
Ecl136II	GAGCTC	1 cut(s)	1240
Eco130I	CCWWGG	1 cut(s)	744
Eco24I	GRGCYC	2 cut(s)	299, 1242
Eco47I	GGWCC	3 cut(s)	374, 439, 450
Eco53kI	GAGCTC	1 cut(s)	1240
Eco57I	CTGAAG	2 cut(s)	1067, 1191
Eco88I	CYCGRG	2 cut(s)	417, 593
EcoICRI	GAGCTC	1 cut(s)	1240
EcoO109I	RGGNCCY	2 cut(s)	374, 439
EcoRII	CCWGG	3 cut(s)	148, 985, 1308
EcoT14I	CCWWGG	1 cut(s)	744
EcoT22I	ATGCAT	1 cut(s)	1183
EcoT38I	GRGCYC	2 cut(s)	299, 1242
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	5 cut(s)	667, 768, 1058, 1273, 1345
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	5 cut(s)	663, 764, 1054, 1269, 1341
FauI	CCCGC	2 cut(s)	217, 1154
FokI	GGATG	3 cut(s)	719, 740, 765
FriOI	GRGCYC	2 cut(s)	299, 1242
FspBI	CTAG	2 cut(s)	399, 1050
GlaI	GCGC	3 cut(s)	213, 590, 752
HaeII	RGCGCY	1 cut(s)	592
HapII	CCGG	3 cut(s)	704, 1096, 1386
HhaI	GCGC	3 cut(s)	214, 591, 753
Hin1II	CATG	5 cut(s)	667, 768, 1058, 1273, 1345
Hin6I	GCGC	3 cut(s)	212, 589, 751
HinP1I	GCGC	3 cut(s)	212, 589, 751
HindIII	AAGCTT	1 cut(s)	1247
HinfI	GANTC	4 cut(s)	89, 96, 410, 1126
HpaII	CCGG	3 cut(s)	704, 1096, 1386
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188III	TCNNGA	8 cut(s)	93, 602, 632, 736, 994, 1050, 1243, 1332
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	4 cut(s)	558, 576, 1141, 1166
HpyCH4III	ACNGT	7 cut(s)	457, 608, 700, 860, 913, 1109, 1352
HpyCH4IV	ACGT	2 cut(s)	1120, 1226
HpyCH4V	TGCA	5 cut(s)	224, 545, 785, 961, 1181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 933, 1246
HpyF3I	CTNAG	6 cut(s)	110, 378, 435, 578, 639, 981
HpySE526I	ACGT	2 cut(s)	1120, 1226
Hsp92II	CATG	5 cut(s)	667, 768, 1058, 1273, 1345
HspAI	GCGC	3 cut(s)	212, 589, 751
Kzo9I	GATC	6 cut(s)	173, 187, 811, 886, 898, 990
LmnI	GCTCC	4 cut(s)	228, 748, 1063, 1237
LweI	GCATC	3 cut(s)	235, 762, 1168
MaeI	CTAG	2 cut(s)	399, 1050
MaeII	ACGT	2 cut(s)	1120, 1226
MaeIII	GTNAC	1 cut(s)	817
MalI	GATC	6 cut(s)	175, 189, 813, 888, 900, 992
MboI	GATC	6 cut(s)	173, 187, 811, 886, 898, 990
MboII	GAAGA	4 cut(s)	62, 885, 1073, 1268
MflI	RGATCY	1 cut(s)	990
MhlI	GDGCHC	2 cut(s)	299, 1242
MluCI	AATT	6 cut(s)	217, 553, 771, 1019, 1032, 1076
MmeI	TCCRAC	1 cut(s)	1159
Mph1103I	ATGCAT	1 cut(s)	1183
MroXI	GAANNNNTTC	1 cut(s)	1080
MseI	TTAA	4 cut(s)	335, 1115, 1223, 1359
MspI	CCGG	3 cut(s)	704, 1096, 1386
MspR9I	CCNGG	3 cut(s)	150, 987, 1310
MvaI	CCWGG	3 cut(s)	150, 987, 1310
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	36, 933, 1246
NdeII	GATC	6 cut(s)	173, 187, 811, 886, 898, 990
NlaIII	CATG	5 cut(s)	667, 768, 1058, 1273, 1345
NlaIV	GGNNCC	3 cut(s)	451, 935, 992
NsiI	ATGCAT	1 cut(s)	1183
NspI	RCATGY	2 cut(s)	667, 1058
PaeR7I	CTCGAG	2 cut(s)	417, 593
PciI	ACATGT	1 cut(s)	1054
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	4 cut(s)	89, 96, 410, 1126
PflMI	CCANNNNNTGG	1 cut(s)	1264
Ppu21I	YACGTR	1 cut(s)	1121
PpuMI	RGGWCCY	2 cut(s)	374, 439
PscI	ACATGT	1 cut(s)	1054
Psp124BI	GAGCTC	1 cut(s)	1242
Psp5II	RGGWCCY	2 cut(s)	374, 439
Psp6I	CCWGG	3 cut(s)	148, 985, 1308
PspGI	CCWGG	3 cut(s)	148, 985, 1308
PspN4I	GGNNCC	3 cut(s)	451, 935, 992
PspPI	GGNCC	3 cut(s)	374, 439, 450
PspPPI	RGGWCCY	2 cut(s)	374, 439
PspXI	VCTCGAGB	2 cut(s)	417, 593
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	990
SacI	GAGCTC	1 cut(s)	1242
SaqAI	TTAA	4 cut(s)	335, 1115, 1223, 1359
Sau3AI	GATC	6 cut(s)	173, 187, 811, 886, 898, 990
Sau96I	GGNCC	3 cut(s)	374, 439, 450
ScrFI	CCNGG	3 cut(s)	150, 987, 1310
SduI	GDGCHC	2 cut(s)	299, 1242
SfaNI	GCATC	3 cut(s)	235, 762, 1168
SfcI	CTRYAG	1 cut(s)	909
Sfr274I	CTCGAG	2 cut(s)	417, 593
SinI	GGWCC	3 cut(s)	374, 439, 450
SlaI	CTCGAG	2 cut(s)	417, 593
SmlI	CTYRAG	4 cut(s)	417, 593, 1241, 1316
SmoI	CTYRAG	4 cut(s)	417, 593, 1241, 1316
Sse9I	AATT	6 cut(s)	217, 553, 771, 1019, 1032, 1076
SsiI	CCGC	2 cut(s)	210, 1147
SspMI	CTAG	2 cut(s)	399, 1050
SstI	GAGCTC	1 cut(s)	1242
StyD4I	CCNGG	3 cut(s)	148, 985, 1308
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	7 cut(s)	457, 608, 700, 860, 913, 1109, 1352
TaiI	ACGT	2 cut(s)	1123, 1229
TaqI	TCGA	4 cut(s)	350, 418, 594, 775
TasI	AATT	6 cut(s)	217, 553, 771, 1019, 1032, 1076
TfiI	GAWTC	4 cut(s)	89, 96, 410, 1126
Tru1I	TTAA	4 cut(s)	335, 1115, 1223, 1359
Tru9I	TTAA	4 cut(s)	335, 1115, 1223, 1359
TscAI	CASTG	1 cut(s)	462
TspDTI	ATGAA	4 cut(s)	333, 440, 1053, 1330
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	1 cut(s)	462
Van91I	CCANNNNNTGG	1 cut(s)	1264
VpaK11BI	GGWCC	3 cut(s)	374, 439, 450
XapI	RAATTY	1 cut(s)	1076
XbaI	TCTAGA	1 cut(s)	1049
XceI	RCATGY	2 cut(s)	667, 1058
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1296
XhoI	CTCGAG	2 cut(s)	417, 593
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	2 cut(s)	399, 1050
Zsp2I	ATGCAT	1 cut(s)	1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.