Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006239

Physical Location & Seq

Genomic Coordinates Forward (+)

27430083 .. 27437034

Gene Structure 6952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGAGGAACAACAACAACAACAACAAGAGCAATCAAAGCTCTGGCGGAGAAGAGCATCACTCCCAAACCCCTGAATCAAGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTGCTCAAAGGTCGCAGTATGCCGGGGAAAGTGTTACTGACTAGGAGATCAGAGCTGGTAGATCATTCAAACTCACAAGAACCAGCGCTAAATTATGAGAGGAGCTTCTCATACAATGATGCTGAAACAAGTGATAGCATATCCAAGGCATTGGAGGAAGCATTTGAGAGCCCAAGTGAGCCGAACACCAATGAAAATGTAAATAAGTTGAAATCATCAGCCTCGAATGTTGAGAATACTTCCAAAGGAGCTCAGAAATCCGTTATTGGTGCTAGAGCAACTGATTCTGCTCGAGTTATGAAGTTCACAAAGGTCCTTTCTGGGACAACAGTCATATTAGAGAAGTTGCGTGAGTTGGCTTGGAGTGGCATACCACCATATATGCGACCTGATGTGTGGAGGCTTCTTTTGGGATATGCACCATCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCGGATACTGAGCGTTCAGATGATGAGATAAACATGCTTCGTCAGATTGCTGTTGATTGCCCAAGAACTGTGCCAGATGTGTCTTTTTTTCAGCAAGAACAAGTCCAGAAATCCTTGGAGCGCATCCTTTACACATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGAATAAATGATCTAGTTACTCCCTTTCTTGTGGTTTTCTTGTCAGAATACTTGGACGGTAGTGTGGATAGTTGGTCAATCTCCAATCTGTCTACCGATCAAATCTGTATAGTAGAAGCTGATTGCTATTGGTGCCTATCAAAGCTACTTGATGGTATGCAAGACCATTACACATTTGCTCAGCCAGGGATCCAGAGGCTTGTGTTTAAGTTAAAGGAATTGGTCAGGCGGATTGATGAACCTGTATCTAAACATGTGGAGGAGCAAGGGCTGGAATTTCTTCAGTTTGCTTTCCGGTGGTTCAACTGTCTTTTAATACGTGAGATTCCCTTCCATCTTATTTCCCGTCTGTGGGATACATATCTTGCTGAAGGAGATGCATTGCCAGATTTCCTTGTGTATATTTTTGCCAGTTTTCTTTTAACGTGGTCAGAGGAGCTCAAGAAGCTTGATTTCCAAGAATTGGTCATGTTTCTTCAACACCTACCAACTAATAACTGGACCGACCAGGAACTCGAGATGGTGCTTTCAAGAGCTTTCATGTGGCACAGTATGTTCAACAGCTCTCCCAGACATTTAGCCACCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

459

Amino Acids

52.75

Weight (kDa)

5.44

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	165 - 408	1.1e-48	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	301 - 424	6e-08	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30710
fragaria_vesca	FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760
malus_domestica	MD03G1229700.v1.1 MD04G1046900.v1.1 MD11G1250200.v1.1
prunus_persica	Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.4G179600_v2.0.a1 Prupe.4G179600_v2.0.a1
pyrus_communis	pycom03g17730 pycom04g04070
rosa_chinensis	RchiOBHm_Chr5g0033161
rosa_laevigata	RLG00000033452
rosa_multiflora	Rmu_sc0009377.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046810
rosa_rugosa	Rorug05G0137100
rosa_samantha	Rh5AG228900 Rh5BG230000 Rh5DG234700
rosa_wichuraiana	Rw5G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	918
AccB7I	CCANNNNNTGG	1 cut(s)	1249
AccI	GTMKAC	1 cut(s)	878
AccIII	TCCGGA	1 cut(s)	616
AciI	CCGC	2 cut(s)	45, 1015
AclWI	GGATC	2 cut(s)	970, 983
AcsI	RAATTY	1 cut(s)	1061
AcuI	CTGAAG	2 cut(s)	1052, 1176
AfeI	AGCGCT	1 cut(s)	198
AfiI	CCNNNNNNNGG	4 cut(s)	773, 1137, 1138, 1249
AflIII	ACRYGT	1 cut(s)	1039
AgsI	TTSAA	8 cut(s)	85, 107, 180, 322, 1090, 1265, 1317, 1345
AjnI	CCWGG	2 cut(s)	970, 1293
Alw21I	GWGCWC	2 cut(s)	364, 1227
AlwI	GGATC	2 cut(s)	970, 983
Ama87I	CYCGRG	2 cut(s)	402, 1301
Aor13HI	TCCGGA	1 cut(s)	616
Aor51HI	AGCGCT	1 cut(s)	198
AoxI	GGCC	1 cut(s)	753
ApoI	RAATTY	1 cut(s)	1061
Asp700I	GAANNNNTTC	1 cut(s)	1065
AspLEI	GCGC	3 cut(s)	199, 576, 738
AspS9I	GGNCC	3 cut(s)	424, 753, 1287
AsuC2I	CCSGG	1 cut(s)	135
AvaI	CYCGRG	2 cut(s)	402, 1301
AvaII	GGWCC	2 cut(s)	424, 1287
BamHI	GGATCC	1 cut(s)	975
BanI	GGYRCC	1 cut(s)	918
BanII	GRGCYC	3 cut(s)	284, 364, 1227
Bbv12I	GWGCWC	2 cut(s)	364, 1227
BccI	CCATC	4 cut(s)	541, 932, 1128, 1300
BciT130I	CCWGG	2 cut(s)	972, 1295
BciVI	GTATCC	2 cut(s)	613, 1135
BcnI	CCSGG	1 cut(s)	135
BfaI	CTAG	3 cut(s)	153, 384, 800
BfoI	RGCGCY	2 cut(s)	200, 577
BfuI	GTATCC	2 cut(s)	613, 1135
BlpI	GCTNAGC	1 cut(s)	966
Bme1390I	CCNGG	3 cut(s)	135, 972, 1295
Bme18I	GGWCC	2 cut(s)	424, 1287
BmeT110I	CYCGRG	2 cut(s)	402, 1301
BmgT120I	GGNCC	3 cut(s)	424, 753, 1287
BmiI	GGNNCC	2 cut(s)	920, 977
BmrFI	CCNGG	3 cut(s)	135, 972, 1295
BmsI	GCATC	4 cut(s)	64, 220, 747, 1153
BoxI	GACNNNNGTC	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu1102I	GCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	2 cut(s)	599, 1211
BpuMI	CCSGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	1106
BsaBI	GATNNNNATC	1 cut(s)	1146
BsaJI	CCNNGG	4 cut(s)	134, 255, 729, 971
BsaWI	WCCGGW	2 cut(s)	616, 1080
Bsc4I	CCNNNNNNNGG	4 cut(s)	773, 1137, 1138, 1249
Bse118I	RCCGGY	1 cut(s)	1370
Bse1I	ACTGG	2 cut(s)	1197, 1289
Bse3DI	GCAATG	1 cut(s)	1166
Bse8I	GATNNNNATC	1 cut(s)	1146
BseAI	TCCGGA	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	972, 1295
BseDI	CCNNGG	4 cut(s)	134, 255, 729, 971
BseGI	GGATG	2 cut(s)	738, 763
BseJI	GATNNNNATC	1 cut(s)	1146
BseLI	CCNNNNNNNGG	4 cut(s)	773, 1137, 1138, 1249
BseMI	GCAATG	1 cut(s)	1166
BseMII	CTCAG	5 cut(s)	109, 377, 614, 615, 980
BseNI	ACTGG	2 cut(s)	1197, 1289
BseRI	GAGGAG	3 cut(s)	226, 1061, 1235
BshFI	GGCC	1 cut(s)	755
BshNI	GGYRCC	1 cut(s)	918
BsiHKAI	GWGCWC	2 cut(s)	364, 1227
BsiHKCI	CYCGRG	2 cut(s)	402, 1301
BsiSI	CCGG	4 cut(s)	134, 617, 1081, 1371
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	4 cut(s)	773, 1137, 1138, 1249
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	755
BsoBI	CYCGRG	2 cut(s)	402, 1301
Bsp1286I	GDGCHC	3 cut(s)	284, 364, 1227
Bsp13I	TCCGGA	1 cut(s)	616
Bsp143I	GATC	5 cut(s)	158, 172, 796, 883, 975
Bsp1720I	GCTNAGC	1 cut(s)	966
BspACI	CCGC	2 cut(s)	45, 1015
BspANI	GGCC	1 cut(s)	755
BspCNI	CTCAG	5 cut(s)	108, 376, 613, 616, 979
BspEI	TCCGGA	1 cut(s)	616
BspLI	GGNNCC	2 cut(s)	920, 977
BspPI	GGATC	2 cut(s)	970, 983
BspQI	GCTCTTC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	918
BsrDI	GCAATG	1 cut(s)	1166
BsrFI	RCCGGY	1 cut(s)	1370
BsrI	ACTGG	2 cut(s)	1197, 1289
BssAI	RCCGGY	1 cut(s)	1370
BssECI	CCNNGG	4 cut(s)	134, 255, 729, 971
BssMI	GATC	5 cut(s)	158, 172, 796, 883, 975
BssT1I	CCWWGG	2 cut(s)	255, 729
Bst2UI	CCWGG	2 cut(s)	972, 1295
Bst4CI	ACNGT	6 cut(s)	442, 593, 685, 845, 1094, 1337
Bst6I	CTCTTC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	1106
BstDEI	CTNAG	6 cut(s)	95, 363, 563, 600, 624, 966
BstF5I	GGATG	2 cut(s)	738, 763
BstH2I	RGCGCY	2 cut(s)	200, 577
BstHHI	GCGC	3 cut(s)	199, 576, 738
BstKTI	GATC	5 cut(s)	161, 175, 799, 886, 978
BstMBI	GATC	5 cut(s)	158, 172, 796, 883, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 918, 1231
BstNI	CCWGG	2 cut(s)	972, 1295
BstNSI	RCATGY	2 cut(s)	652, 1043
BstPAI	GACNNNNGTC	1 cut(s)	440
BstSCI	CCNGG	3 cut(s)	133, 970, 1293
BstX2I	RGATCY	1 cut(s)	975
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	975
BsuI	GTATCC	2 cut(s)	613, 1135
BsuRI	GGCC	1 cut(s)	755
BtsCI	GGATG	2 cut(s)	738, 763
CfoI	GCGC	3 cut(s)	199, 576, 738
Cfr10I	RCCGGY	1 cut(s)	1370
Cfr13I	GGNCC	3 cut(s)	424, 753, 1287
CviAII	CATG	5 cut(s)	649, 750, 1040, 1255, 1327
DdeI	CTNAG	6 cut(s)	95, 363, 563, 600, 624, 966
DpnI	GATC	5 cut(s)	160, 174, 798, 885, 977
DpnII	GATC	5 cut(s)	158, 172, 796, 883, 975
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	2 cut(s)	60, 1030
Ecl136II	GAGCTC	2 cut(s)	362, 1225
Eco130I	CCWWGG	2 cut(s)	255, 729
Eco24I	GRGCYC	3 cut(s)	284, 364, 1227
Eco47I	GGWCC	2 cut(s)	424, 1287
Eco47III	AGCGCT	1 cut(s)	198
Eco53kI	GAGCTC	2 cut(s)	362, 1225
Eco57I	CTGAAG	2 cut(s)	1052, 1176
Eco88I	CYCGRG	2 cut(s)	402, 1301
EcoICRI	GAGCTC	2 cut(s)	362, 1225
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	970, 1293
EcoT14I	CCWWGG	2 cut(s)	255, 729
EcoT22I	ATGCAT	1 cut(s)	1168
EcoT38I	GRGCYC	3 cut(s)	284, 364, 1227
ErhI	CCWWGG	2 cut(s)	255, 729
FaeI	CATG	5 cut(s)	652, 753, 1043, 1258, 1330
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	5 cut(s)	648, 749, 1039, 1254, 1326
FblI	GTMKAC	1 cut(s)	878
FokI	GGATG	2 cut(s)	725, 750
FriOI	GRGCYC	3 cut(s)	284, 364, 1227
FspBI	CTAG	3 cut(s)	153, 384, 800
GlaI	GCGC	3 cut(s)	198, 575, 737
HaeII	RGCGCY	2 cut(s)	200, 577
HaeIII	GGCC	1 cut(s)	755
HapII	CCGG	4 cut(s)	134, 617, 1081, 1371
HhaI	GCGC	3 cut(s)	199, 576, 738
Hin1II	CATG	5 cut(s)	652, 753, 1043, 1258, 1330
Hin6I	GCGC	3 cut(s)	197, 574, 736
HinP1I	GCGC	3 cut(s)	197, 574, 736
HindIII	AAGCTT	1 cut(s)	1232
HinfI	GANTC	4 cut(s)	74, 81, 395, 1111
HpaII	CCGG	4 cut(s)	134, 617, 1081, 1371
Hpy166II	GTNNAC	2 cut(s)	417, 879
Hpy188I	TCNGA	8 cut(s)	98, 163, 366, 544, 634, 660, 832, 1219
Hpy188III	TCNNGA	8 cut(s)	78, 587, 617, 721, 979, 1228, 1303, 1317
Hpy8I	GTNNAC	2 cut(s)	417, 879
HpyAV	CCTTC	4 cut(s)	543, 561, 1126, 1151
HpyCH4III	ACNGT	6 cut(s)	442, 593, 685, 845, 1094, 1337
HpyCH4IV	ACGT	2 cut(s)	1105, 1211
HpyCH4V	TGCA	4 cut(s)	530, 770, 946, 1166
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 918, 1231
HpyF3I	CTNAG	6 cut(s)	95, 363, 563, 600, 624, 966
HpySE526I	ACGT	2 cut(s)	1105, 1211
Hsp92II	CATG	5 cut(s)	652, 753, 1043, 1258, 1330
HspAI	GCGC	3 cut(s)	197, 574, 736
Kpn2I	TCCGGA	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	158, 172, 796, 883, 975
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	5 cut(s)	213, 359, 733, 1048, 1222
LweI	GCATC	4 cut(s)	64, 220, 747, 1153
MaeI	CTAG	3 cut(s)	153, 384, 800
MaeII	ACGT	2 cut(s)	1105, 1211
MaeIII	GTNAC	2 cut(s)	144, 802
MalI	GATC	5 cut(s)	160, 174, 798, 885, 977
MboI	GATC	5 cut(s)	158, 172, 796, 883, 975
MboII	GAAGA	3 cut(s)	62, 1058, 1253
MflI	RGATCY	1 cut(s)	975
MhlI	GDGCHC	3 cut(s)	284, 364, 1227
MluCI	AATT	5 cut(s)	202, 538, 1004, 1061, 1247
MnlI	CCTC	9 cut(s)	104, 204, 259, 343, 504, 547, 975, 1039, 1213
Mph1103I	ATGCAT	1 cut(s)	1168
MroI	TCCGGA	1 cut(s)	616
MroXI	GAANNNNTTC	1 cut(s)	1065
MseI	TTAA	4 cut(s)	993, 998, 1100, 1208
MspI	CCGG	4 cut(s)	134, 617, 1081, 1371
MspR9I	CCNGG	3 cut(s)	135, 972, 1295
MvaI	CCWGG	2 cut(s)	972, 1295
MwoI	GCNNNNNNNGC	3 cut(s)	36, 918, 1231
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	158, 172, 796, 883, 975
NlaIII	CATG	5 cut(s)	652, 753, 1043, 1258, 1330
NlaIV	GGNNCC	2 cut(s)	920, 977
NsiI	ATGCAT	1 cut(s)	1168
NspI	RCATGY	2 cut(s)	652, 1043
PaeR7I	CTCGAG	2 cut(s)	402, 1301
PciI	ACATGT	1 cut(s)	1039
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	1065
PfeI	GAWTC	4 cut(s)	74, 81, 395, 1111
PflMI	CCANNNNNTGG	1 cut(s)	1249
Ppu21I	YACGTR	1 cut(s)	1106
PpuMI	RGGWCCY	1 cut(s)	424
PscI	ACATGT	1 cut(s)	1039
PshAI	GACNNNNGTC	1 cut(s)	440
Psp124BI	GAGCTC	2 cut(s)	364, 1227
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	970, 1293
PspGI	CCWGG	2 cut(s)	970, 1293
PspN4I	GGNNCC	2 cut(s)	920, 977
PspPI	GGNCC	3 cut(s)	424, 753, 1287
PspPPI	RGGWCCY	1 cut(s)	424
PspXI	VCTCGAGB	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	975
SacI	GAGCTC	2 cut(s)	364, 1227
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	993, 998, 1100, 1208
Sau3AI	GATC	5 cut(s)	158, 172, 796, 883, 975
Sau96I	GGNCC	3 cut(s)	424, 753, 1287
ScrFI	CCNGG	3 cut(s)	135, 972, 1295
SduI	GDGCHC	3 cut(s)	284, 364, 1227
SfaNI	GCATC	4 cut(s)	64, 220, 747, 1153
Sfr274I	CTCGAG	2 cut(s)	402, 1301
SinI	GGWCC	2 cut(s)	424, 1287
SlaI	CTCGAG	2 cut(s)	402, 1301
SmlI	CTYRAG	4 cut(s)	402, 578, 1226, 1301
SmoI	CTYRAG	4 cut(s)	402, 578, 1226, 1301
Sse9I	AATT	5 cut(s)	202, 538, 1004, 1061, 1247
SsiI	CCGC	2 cut(s)	45, 1015
SspMI	CTAG	3 cut(s)	153, 384, 800
SstI	GAGCTC	2 cut(s)	364, 1227
StyD4I	CCNGG	3 cut(s)	133, 970, 1293
StyI	CCWWGG	2 cut(s)	255, 729
TaaI	ACNGT	6 cut(s)	442, 593, 685, 845, 1094, 1337
TaiI	ACGT	2 cut(s)	1108, 1214
TaqI	TCGA	4 cut(s)	335, 403, 760, 1302
TaqII	GACCGA	1 cut(s)	1304
TasI	AATT	5 cut(s)	202, 538, 1004, 1061, 1247
TfiI	GAWTC	4 cut(s)	74, 81, 395, 1111
Tru1I	TTAA	4 cut(s)	993, 998, 1100, 1208
Tru9I	TTAA	4 cut(s)	993, 998, 1100, 1208
TspDTI	ATGAA	4 cut(s)	318, 425, 1038, 1315
TspGWI	ACGGA	1 cut(s)	361
Van91I	CCANNNNNTGG	1 cut(s)	1249
VpaK11BI	GGWCC	2 cut(s)	424, 1287
XapI	RAATTY	1 cut(s)	1061
XceI	RCATGY	2 cut(s)	652, 1043
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1281
XhoI	CTCGAG	2 cut(s)	402, 1301
XmiI	GTMKAC	1 cut(s)	878
XmnI	GAANNNNTTC	1 cut(s)	1065
XspI	CTAG	3 cut(s)	153, 384, 800
Zsp2I	ATGCAT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.