MD03G1229700.v1.1

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
31509835 .. 31516575
6741 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1229700.v1.1.491

Sequence Viewer

Length: 1371 bp
ATGAACAACAAGAGCAATCAGAGCTTCGACAGAGAAGAAAATCACTCCAAGAAAGAAAGCGCAATCTCAACCCCCGAATCCAGATTCAACCAAACCCTCAGAAATGTTCAAGGGTTGCTCAAAGGTCGTAGTATTCCTGGTAAAGTGTTACTGACTAGGAGGTCAAACCTGCTGGATCCTTCAAAATTACAAGTGCCCTCTCCAAACTATGGAAGGAGCTTATCATTCAATGATGCTCAAACAAGTGATCGCAGAGCCTTGGAGGAAGACAACGAGGTTCTAGGCAACCCCAGCAATAATGAAAATTCAAATAAGTTAACATCATCAACCTCGAATGTTGACAATATTTCTAGAGGAGCTCAAAAATCTGCCATTGGAGCTAGAGCTACTGATTCTGCAAGAGTTATGAAGTTCACAAAGGTTCTTTCAGAGACAACAGTGATATTAGAAAAGTTGCGTGAGTTGGCTTGGAGTGGCGTACCACCATATATGCGGCCCGACGTATGGAGGCTTCTTTTGGGATATGCACCATCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTGCTTCTCAGTACTATGATATTCCGGATACTGAGCGTTCAGATGATGAGATAAACATGCTTCGTCAGATTGCTGTTGATTGCCCAAGAACTGTGCCAGATGTATCTTTCTTTCAGCAGGAGCAAGTCCAGAAATCCTTGGAGCGCATCCTTTATACCTGGGCAATTCGACATCCTGCAAGTGGATATGTTCAGGGAATAAATGATCTTGTTACTCCCTTTCTAGTTGTTTTCTTGTCAGAATACTTAGACGGGAGTGTGGATAATTGGTTGATCTCCGATCTGTCTCCTGATAAAATATCTAATGTAGAGGCTGACTGCTATTGGTGCCTATCAAATTTACTTGAAGGTATGCAAGATCATTACACTTTTGCTCAGCCAGGAATCCAGAGGCTTGTGTTTAAACTAAAGGAATTGGTCAGGCGGATTGATGAACCTGTATCTAGACACGTGGAGGAGCAAGGACTCGAATTTCTTCAATTTGCTTTTCGGTGGTTCAACTGTCTTCTAATACGCGAGATTCCTTTCAATCTTATTTCCCGTCTGTGGGATACATACCTAGCCGAAGGAGATGCATTGCCGGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAACGTGGTCAGAGGAGCTTCAGAAGCTTGATTTCCAAGAGTTGGTTATGTTTCTTCAACACCTTCCAACCCATAACTGGACTCACCAAGAACTCGAGATGGTGCTGTCAAGAGCTTTCATGTGGCACAGTATGTTCAAAAGCTCTCCTAGACACTTGGCCAGCTAA

Protein Analysis

457

Amino Acids

52.7

Weight (kDa)

5.72

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 164 - 407 1.4e-48 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 301 - 422 3.8e-08 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
Acc36I ACCTGC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 915
AccB7I CCANNNNNTGG 2 cut(s) 209, 1246
AccII CGCG 1 cut(s) 1104
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 2 cut(s) 493, 1012
AclWI GGATC 2 cut(s) 170, 183
AcoI YGGCCR 1 cut(s) 1362
AcsI RAATTY 3 cut(s) 304, 925, 1058
AcuI CTGAAG 1 cut(s) 1208
AcvI CACGTG 1 cut(s) 1039
AfaI GTAC 2 cut(s) 480, 602
AfiI CCNNNNNNNGG 7 cut(s) 209, 504, 770, 1134, 1135, 1246, 1281
AflIII ACRYGT 1 cut(s) 1036
AjnI CCWGG 3 cut(s) 136, 746, 967
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 425, 879
AlwI GGATC 2 cut(s) 170, 183
Ama87I CYCGRG 1 cut(s) 1298
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 2 cut(s) 494, 1362
ApoI RAATTY 3 cut(s) 304, 925, 1058
Asp700I GAANNNNTTC 1 cut(s) 1062
AspLEI GCGC 3 cut(s) 62, 573, 735
AspS9I GGNCC 1 cut(s) 495
AsuHPI GGTGA 1 cut(s) 1280
AvaI CYCGRG 1 cut(s) 1298
BaeGI GKGCMC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 1364
BamHI GGATCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 915
BanII GRGCYC 1 cut(s) 361
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BbrPI CACGTG 1 cut(s) 1039
BbsI GAAGAC 2 cut(s) 273, 1085
Bbv12I GWGCWC 1 cut(s) 361
BccI CCATC 2 cut(s) 538, 1297
BcgI CGANNNNNNTGC 2 cut(s) 1142, 1176
BciT130I CCWGG 3 cut(s) 138, 748, 969
BciVI GTATCC 2 cut(s) 610, 1132
BcoDI GTCTC 2 cut(s) 425, 879
BfaI CTAG 8 cut(s) 156, 281, 351, 381, 812, 1032, 1148, 1353
BfoI RGCGCY 1 cut(s) 574
BfuAI ACCTGC 1 cut(s) 177
BfuI GTATCC 2 cut(s) 610, 1132
BisI GCNGC 1 cut(s) 494
BlpI GCTNAGC 1 cut(s) 963
BlsI GCNGC 1 cut(s) 495
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 3 cut(s) 138, 748, 969
BmeT110I CYCGRG 1 cut(s) 1298
BmgT120I GGNCC 1 cut(s) 495
BmiI GGNNCC 2 cut(s) 177, 917
BmrFI CCNGG 3 cut(s) 138, 748, 969
BmsI GCATC 3 cut(s) 223, 744, 1150
BpiI GAAGAC 2 cut(s) 273, 1085
Bpu1102I GCTNAGC 1 cut(s) 963
BpuEI CTTGAG 1 cut(s) 596
BsaAI YACGTR 1 cut(s) 1039
BsaJI CCNNGG 3 cut(s) 258, 726, 747
BsaWI WCCGGW 1 cut(s) 613
Bsc4I CCNNNNNNNGG 7 cut(s) 209, 504, 770, 1134, 1135, 1246, 1281
Bse1I ACTGG 2 cut(s) 1194, 1286
Bse3DI GCAATG 1 cut(s) 1163
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 3 cut(s) 138, 748, 969
BseDI CCNNGG 3 cut(s) 258, 726, 747
BseGI GGATG 2 cut(s) 735, 760
BseLI CCNNNNNNNGG 7 cut(s) 209, 504, 770, 1134, 1135, 1246, 1281
BseMI GCAATG 1 cut(s) 1163
BseMII CTCAG 4 cut(s) 112, 611, 612, 977
BseNI ACTGG 2 cut(s) 1194, 1286
BseRI GAGGAG 3 cut(s) 369, 1058, 1232
BseSI GKGCMC 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 1104
BshFI GGCC 2 cut(s) 496, 1364
BshNI GGYRCC 1 cut(s) 915
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 1298
BsiSI CCGG 2 cut(s) 614, 1169
BslI CCNNNNNNNGG 7 cut(s) 209, 504, 770, 1134, 1135, 1246, 1281
BsmAI GTCTC 2 cut(s) 425, 879
BsnI GGCC 2 cut(s) 496, 1364
BsoBI CYCGRG 1 cut(s) 1298
Bsp1286I GDGCHC 2 cut(s) 198, 361
Bsp13I TCCGGA 1 cut(s) 613
Bsp143I GATC 6 cut(s) 175, 247, 793, 861, 868, 946
Bsp1720I GCTNAGC 1 cut(s) 963
BspACI CCGC 2 cut(s) 493, 1012
BspANI GGCC 2 cut(s) 496, 1364
BspCNI CTCAG 4 cut(s) 111, 610, 613, 976
BspEI TCCGGA 1 cut(s) 613
BspFNI CGCG 1 cut(s) 1104
BspLI GGNNCC 2 cut(s) 177, 917
BspMI ACCTGC 1 cut(s) 177
BspPI GGATC 2 cut(s) 170, 183
BspT107I GGYRCC 1 cut(s) 915
BsrDI GCAATG 1 cut(s) 1163
BsrI ACTGG 2 cut(s) 1194, 1286
BssECI CCNNGG 3 cut(s) 258, 726, 747
BssMI GATC 6 cut(s) 175, 247, 793, 861, 868, 946
BssT1I CCWWGG 2 cut(s) 258, 726
Bst2UI CCWGG 3 cut(s) 138, 748, 969
Bst4CI ACNGT 5 cut(s) 439, 590, 682, 1091, 1334
BstBAI YACGTR 1 cut(s) 1039
BstC8I GCNNGC 1 cut(s) 1366
BstDEI CTNAG 6 cut(s) 98, 560, 597, 621, 835, 963
BstF5I GGATG 2 cut(s) 735, 760
BstFNI CGCG 1 cut(s) 1104
BstH2I RGCGCY 1 cut(s) 574
BstHHI GCGC 3 cut(s) 62, 573, 735
BstKTI GATC 6 cut(s) 178, 250, 796, 864, 871, 949
BstMAI GTCTC 2 cut(s) 425, 879
BstMBI GATC 6 cut(s) 175, 247, 793, 861, 868, 946
BstMWI GCNNNNNNNGC 5 cut(s) 21, 291, 377, 915, 1228
BstNI CCWGG 3 cut(s) 138, 748, 969
BstNSI RCATGY 1 cut(s) 649
BstSCI CCNGG 3 cut(s) 136, 746, 967
BstSLI GKGCMC 1 cut(s) 198
BstUI CGCG 1 cut(s) 1104
BstV2I GAAGAC 2 cut(s) 273, 1085
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuI GTATCC 2 cut(s) 610, 1132
BsuRI GGCC 2 cut(s) 496, 1364
BtsCI GGATG 2 cut(s) 735, 760
BtsIMutI CAGTG 1 cut(s) 444
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 1366
CfoI GCGC 3 cut(s) 62, 573, 735
Cfr13I GGNCC 1 cut(s) 495
Csp6I GTAC 2 cut(s) 479, 601
CviAII CATG 2 cut(s) 646, 1324
CviQI GTAC 2 cut(s) 479, 601
DdeI CTNAG 6 cut(s) 98, 560, 597, 621, 835, 963
DpnI GATC 6 cut(s) 177, 249, 795, 863, 870, 948
DpnII GATC 6 cut(s) 175, 247, 793, 861, 868, 946
DraI TTTAAA 1 cut(s) 991
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 1362
EciI GGCGGA 1 cut(s) 1027
Ecl136II GAGCTC 1 cut(s) 359
Eco130I CCWWGG 2 cut(s) 258, 726
Eco24I GRGCYC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 1208
Eco72I CACGTG 1 cut(s) 1039
Eco88I CYCGRG 1 cut(s) 1298
EcoICRI GAGCTC 1 cut(s) 359
EcoRII CCWGG 3 cut(s) 136, 746, 967
EcoT14I CCWWGG 2 cut(s) 258, 726
EcoT22I ATGCAT 1 cut(s) 1165
EcoT38I GRGCYC 1 cut(s) 361
ErhI CCWWGG 2 cut(s) 258, 726
FaeI CATG 2 cut(s) 649, 1327
FatI CATG 2 cut(s) 645, 1323
Fnu4HI GCNGC 1 cut(s) 494
FokI GGATG 2 cut(s) 722, 747
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 1 cut(s) 494
FspBI CTAG 8 cut(s) 156, 281, 351, 381, 812, 1032, 1148, 1353
GlaI GCGC 3 cut(s) 61, 572, 734
GluI GCNGC 1 cut(s) 494
GsaI CCCAGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 574
HaeIII GGCC 2 cut(s) 496, 1364
HapII CCGG 2 cut(s) 614, 1169
HhaI GCGC 3 cut(s) 62, 573, 735
Hin1II CATG 2 cut(s) 649, 1327
Hin6I GCGC 3 cut(s) 60, 571, 733
HinP1I GCGC 3 cut(s) 60, 571, 733
HincII GTYRAC 2 cut(s) 318, 340
HindII GTYRAC 2 cut(s) 318, 340
HindIII AAGCTT 1 cut(s) 1229
HinfI GANTC 7 cut(s) 77, 84, 392, 972, 1053, 1108, 1285
HpaI GTTAAC 1 cut(s) 318
HpaII CCGG 2 cut(s) 614, 1169
HphI GGTGA 1 cut(s) 1280
Hpy166II GTNNAC 3 cut(s) 318, 340, 414
Hpy8I GTNNAC 3 cut(s) 318, 340, 414
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 7 cut(s) 189, 207, 540, 558, 929, 1148, 1277
HpyCH4III ACNGT 5 cut(s) 439, 590, 682, 1091, 1334
HpyCH4IV ACGT 3 cut(s) 501, 1038, 1208
HpyCH4V TGCA 5 cut(s) 398, 527, 767, 943, 1163
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 291, 377, 915, 1228
HpyF3I CTNAG 6 cut(s) 98, 560, 597, 621, 835, 963
HpySE526I ACGT 3 cut(s) 501, 1038, 1208
Hsp92II CATG 2 cut(s) 649, 1327
HspAI GCGC 3 cut(s) 60, 571, 733
Kpn2I TCCGGA 1 cut(s) 613
KspAI GTTAAC 1 cut(s) 318
Kzo9I GATC 6 cut(s) 175, 247, 793, 861, 868, 946
LmnI GCTCC 7 cut(s) 216, 356, 377, 709, 730, 1045, 1219
LweI GCATC 3 cut(s) 223, 744, 1150
MaeI CTAG 8 cut(s) 156, 281, 351, 381, 812, 1032, 1148, 1353
MaeII ACGT 3 cut(s) 501, 1038, 1208
MaeIII GTNAC 2 cut(s) 147, 799
MalI GATC 6 cut(s) 177, 249, 795, 863, 870, 948
MboI GATC 6 cut(s) 175, 247, 793, 861, 868, 946
MboII GAAGA 5 cut(s) 47, 278, 1055, 1085, 1250
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 2 cut(s) 198, 361
MlsI TGGCCA 1 cut(s) 1364
MluCI AATT 9 cut(s) 185, 304, 535, 753, 853, 925, 1001, 1058, 1067
MluNI TGGCCA 1 cut(s) 1364
MlyI GAGTC 2 cut(s) 1047, 1279
MmeI TCCRAC 1 cut(s) 1295
Mox20I TGGCCA 1 cut(s) 1364
Mph1103I ATGCAT 1 cut(s) 1165
MroI TCCGGA 1 cut(s) 613
MroXI GAANNNNTTC 1 cut(s) 1062
MscI TGGCCA 1 cut(s) 1364
MseI TTAA 3 cut(s) 317, 990, 1205
Msp20I TGGCCA 1 cut(s) 1364
MspI CCGG 2 cut(s) 614, 1169
MspR9I CCNGG 3 cut(s) 138, 748, 969
MssI GTTTAAAC 1 cut(s) 991
MvaI CCWGG 3 cut(s) 138, 748, 969
MvnI CGCG 1 cut(s) 1104
MwoI GCNNNNNNNGC 5 cut(s) 21, 291, 377, 915, 1228
NdeII GATC 6 cut(s) 175, 247, 793, 861, 868, 946
NlaIII CATG 2 cut(s) 649, 1327
NlaIV GGNNCC 2 cut(s) 177, 917
NsiI ATGCAT 1 cut(s) 1165
NspI RCATGY 1 cut(s) 649
PaeR7I CTCGAG 1 cut(s) 1298
PdmI GAANNNNTTC 1 cut(s) 1062
PfeI GAWTC 5 cut(s) 77, 84, 392, 972, 1108
PflMI CCANNNNNTGG 2 cut(s) 209, 1246
PkrI GCNGC 1 cut(s) 495
PleI GAGTC 2 cut(s) 1047, 1279
PmaCI CACGTG 1 cut(s) 1039
PmeI GTTTAAAC 1 cut(s) 991
PmlI CACGTG 1 cut(s) 1039
PpsI GAGTC 2 cut(s) 1047, 1279
Ppu21I YACGTR 1 cut(s) 1039
Psp124BI GAGCTC 1 cut(s) 361
Psp6I CCWGG 3 cut(s) 136, 746, 967
PspCI CACGTG 1 cut(s) 1039
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 3 cut(s) 136, 746, 967
PspN4I GGNNCC 2 cut(s) 177, 917
PspPI GGNCC 1 cut(s) 495
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 2 cut(s) 480, 602
RsaNI GTAC 2 cut(s) 479, 601
SacI GAGCTC 1 cut(s) 361
SaqAI TTAA 3 cut(s) 317, 990, 1205
SatI GCNGC 1 cut(s) 494
Sau3AI GATC 6 cut(s) 175, 247, 793, 861, 868, 946
Sau96I GGNCC 1 cut(s) 495
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 2 cut(s) 1047, 1279
ScrFI CCNGG 3 cut(s) 138, 748, 969
SduI GDGCHC 2 cut(s) 198, 361
SfaNI GCATC 3 cut(s) 223, 744, 1150
Sfr274I CTCGAG 1 cut(s) 1298
SlaI CTCGAG 1 cut(s) 1298
SmlI CTYRAG 2 cut(s) 575, 1298
SmoI CTYRAG 2 cut(s) 575, 1298
Sse9I AATT 9 cut(s) 185, 304, 535, 753, 853, 925, 1001, 1058, 1067
SsiI CCGC 2 cut(s) 493, 1012
SspI AATATT 1 cut(s) 346
SspMI CTAG 8 cut(s) 156, 281, 351, 381, 812, 1032, 1148, 1353
SstI GAGCTC 1 cut(s) 361
StyD4I CCNGG 3 cut(s) 136, 746, 967
StyI CCWWGG 2 cut(s) 258, 726
TaaI ACNGT 5 cut(s) 439, 590, 682, 1091, 1334
TaiI ACGT 3 cut(s) 504, 1041, 1211
TaqI TCGA 5 cut(s) 27, 332, 757, 1056, 1299
TasI AATT 9 cut(s) 185, 304, 535, 753, 853, 925, 1001, 1058, 1067
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 5 cut(s) 77, 84, 392, 972, 1108
Tru1I TTAA 3 cut(s) 317, 990, 1205
Tru9I TTAA 3 cut(s) 317, 990, 1205
TscAI CASTG 1 cut(s) 444
TspDTI ATGAA 5 cut(s) 17, 315, 422, 1035, 1312
TspRI CASTG 1 cut(s) 444
Van91I CCANNNNNTGG 2 cut(s) 209, 1246
XapI RAATTY 3 cut(s) 304, 925, 1058
XbaI TCTAGA 2 cut(s) 350, 1031
XceI RCATGY 1 cut(s) 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 1278
XhoI CTCGAG 1 cut(s) 1298
XmnI GAANNNNTTC 1 cut(s) 1062
XspI CTAG 8 cut(s) 156, 281, 351, 381, 812, 1032, 1148, 1353
ZrmI AGTACT 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 1165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.