pycom04g04070

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
3656516 .. 3663148
6633 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04070.3

Sequence Viewer

Length: 1380 bp
ATGAAGAACAACAGCAACCAAAACAACAGCAGAGAAGAAGAAAATCACTCCAAAGATGAAGGTTCTATCTCATCCCTCGATTCAACATTCAACCAAACGCTCCGAAATGTTCAAGGGTTGCTCAAAGGGCGTAGCATTCCTGGTAAAGTGTTACTGAGTCGGAGATCAGACCCGCTAGATCAGTCAAACATCCAAGACCCCTCTCCAAATTATGAAAGGAGCTTCTCATACAACGAATCTGAAACAAGCGATCGTATGGCCAATGAACTGGAGGAAGAAGTGCAGAGCTCAATCAAGCCAAGCAATAATGAAAATTCAAATAGCCTAAATTCATCCACTTCCGATACTGAGAATACTTCCAAAGAAGCTCAGAAATCCACCACGGGTGCTAGATGTACCGATTCTGCTAGAGTTGCAAAGTTCACAAAGGTTCTCTCAGGGACAACAGTCATACTAGAGAAGTTGCGTGAGTTGTCTTGGAGTGGCATACCACCATATATGCGACCAGACGTATGGAGGCTTCTTTTGGGATATGCACCACCTAATTCAGATAGAAGGGGGGGAGTTCTGAAAAGGAAGCGCCTCGAGTATCTTGATTGTGTTTCCCAATACTATGACATTCCGGATTCTGAGCGCTCAGATGATGAGATAAACATGCTTCGTCAGATTGCTGTTGATTGCCCAAGAACAGTGCCAGATGTATCCTTTTTTCAGCAAGAACAAGTCCAGAAATCCTTGGAGCGGATCCTTTACACATGGGCCATTAGACATCCTGCAAGTGGATATGTTCAGGGAATAAATGATCTGGCTACTCCCTTTCTAGTAGTTTTCTTGTCAGAATACTTAGAAGGGAGTGTGGATAATTGGTCAATCTCTGATCTGTCTCCCGATAAAATATCTTATGTTGAGGCTGATTGCTATTGGTGCCTATCAAAGTTACTCGATGGTATGCAAGATCATTACACATTTGCTCAGCCGGGAATCCAGAGGCTAGTGTTTAAGCTAAAGGAATTGGTCAGGCGGATTGATGAACCGGTATCTACACACGTGGAGGAGCAAGGGCTAGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTTTAATACGGGAGATTCCTTTTGATCTCGTCACCCGCCTGTGGGATACCTATCTTGCTGAAGGAGATTCATTGCCAGATTTTCTTGTGTATATATTTGCTAGTTTTCTTTTAACGTGGTCAGATAAGCTTGTGAAGCTGGAATTCCAAGAGTTGGTTATGTTTCTTCAACACCTTCCGACAGATAACTGGACTCACCAAGACCTAGAGATCGTGCTTTCAAGAGCGTTCGTGTGGCATAGTATGTTCAACAGCTCTCCTAGCCATTTAGCCAGCTAA

Protein Analysis

460

Amino Acids

52.77

Weight (kDa)

4.95

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 924
AccB7I CCANNNNNTGG 1 cut(s) 1255
AccBSI CCGCTC 1 cut(s) 742
AccIII TCCGGA 1 cut(s) 622
AciI CCGC 5 cut(s) 173, 742, 1021, 1087, 1138
AclWI GGATC 2 cut(s) 739, 752
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 4 cut(s) 313, 328, 1067, 1244
AcuI CTGAAG 1 cut(s) 1182
AcvI CACGTG 1 cut(s) 1048
AfaI GTAC 1 cut(s) 397
AfeI AGCGCT 1 cut(s) 635
AfiI CCNNNNNNNGG 5 cut(s) 741, 779, 1143, 1144, 1255
AflIII ACRYGT 1 cut(s) 1045
AgeI ACCGGT 1 cut(s) 1033
AgsI TTSAA 9 cut(s) 84, 91, 113, 318, 1076, 1096, 1271, 1323, 1351
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 8 cut(s) 222, 288, 368, 1003, 1231, 1240, 1356, 1377
AluI AGCT 8 cut(s) 222, 288, 368, 1003, 1231, 1240, 1356, 1377
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 888
AlwI GGATC 2 cut(s) 739, 752
Ama87I CYCGRG 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 622
Aor51HI AGCGCT 1 cut(s) 635
AoxI GGCC 2 cut(s) 258, 759
ApoI RAATTY 4 cut(s) 313, 328, 1067, 1244
AsiGI ACCGGT 1 cut(s) 1033
Asp700I GAANNNNTTC 1 cut(s) 1071
AspLEI GCGC 2 cut(s) 582, 636
AspS9I GGNCC 1 cut(s) 759
AsuC2I CCSGG 1 cut(s) 978
AsuHPI GGTGA 2 cut(s) 1126, 1289
AvaI CYCGRG 1 cut(s) 584
BalI TGGCCA 1 cut(s) 260
BamHI GGATCC 1 cut(s) 744
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 504, 536
BbrPI CACGTG 1 cut(s) 1048
Bbv12I GWGCWC 1 cut(s) 290
BccI CCATC 1 cut(s) 938
BciT130I CCWGG 1 cut(s) 141
BciVI GTATCC 2 cut(s) 712, 1141
BcnI CCSGG 1 cut(s) 978
BcoDI GTCTC 1 cut(s) 888
BfoI RGCGCY 2 cut(s) 583, 637
BfuI GTATCC 2 cut(s) 712, 1141
BlpI GCTNAGC 1 cut(s) 972
Bme1390I CCNGG 2 cut(s) 141, 978
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 759
BmiI GGNNCC 2 cut(s) 746, 926
BmrFI CCNGG 2 cut(s) 141, 978
BoxI GACNNNNGTC 1 cut(s) 446
BpmI CTGGAG 1 cut(s) 290
Bpu1102I GCTNAGC 1 cut(s) 972
BpuMI CCSGG 1 cut(s) 978
BsaAI YACGTR 1 cut(s) 1048
BsaBI GATNNNNATC 1 cut(s) 1152
BsaJI CCNNGG 2 cut(s) 381, 735
BsaWI WCCGGW 2 cut(s) 622, 1033
Bsc4I CCNNNNNNNGG 5 cut(s) 741, 779, 1143, 1144, 1255
Bse118I RCCGGY 1 cut(s) 1033
Bse1I ACTGG 2 cut(s) 273, 1295
Bse3DI GCAATG 1 cut(s) 1172
Bse8I GATNNNNATC 1 cut(s) 1152
BseAI TCCGGA 1 cut(s) 622
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 381, 735
BseGI GGATG 4 cut(s) 71, 189, 332, 769
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 5 cut(s) 741, 779, 1143, 1144, 1255
BseMI GCAATG 1 cut(s) 1172
BseMII CTCAG 7 cut(s) 146, 339, 383, 450, 621, 651, 986
BseNI ACTGG 2 cut(s) 273, 1295
BseRI GAGGAG 1 cut(s) 1067
BsgI GTGCAG 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 2 cut(s) 260, 761
BshNI GGYRCC 1 cut(s) 924
BshTI ACCGGT 1 cut(s) 1033
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 3 cut(s) 623, 977, 1034
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 5 cut(s) 741, 779, 1143, 1144, 1255
BsmAI GTCTC 1 cut(s) 888
BsmFI GGGAC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 2 cut(s) 260, 761
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 290
Bsp13I TCCGGA 1 cut(s) 622
Bsp143I GATC 9 cut(s) 164, 178, 250, 744, 802, 877, 955, 1126, 1311
Bsp1720I GCTNAGC 1 cut(s) 972
BspACI CCGC 5 cut(s) 173, 742, 1021, 1087, 1138
BspANI GGCC 2 cut(s) 260, 761
BspCNI CTCAG 7 cut(s) 147, 340, 382, 449, 622, 650, 985
BspEI TCCGGA 1 cut(s) 622
BspLI GGNNCC 2 cut(s) 746, 926
BspPI GGATC 2 cut(s) 739, 752
BspT107I GGYRCC 1 cut(s) 924
BsrBI CCGCTC 1 cut(s) 742
BsrDI GCAATG 1 cut(s) 1172
BsrFI RCCGGY 1 cut(s) 1033
BsrI ACTGG 2 cut(s) 273, 1295
BssAI RCCGGY 1 cut(s) 1033
BssECI CCNNGG 2 cut(s) 381, 735
BssMI GATC 9 cut(s) 164, 178, 250, 744, 802, 877, 955, 1126, 1311
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 3 cut(s) 448, 691, 1100
BstBAI YACGTR 1 cut(s) 1048
BstC8I GCNNGC 1 cut(s) 1375
BstDEI CTNAG 8 cut(s) 155, 348, 369, 436, 630, 637, 844, 972
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 4 cut(s) 71, 189, 332, 769
BstH2I RGCGCY 2 cut(s) 583, 637
BstHHI GCGC 2 cut(s) 582, 636
BstKTI GATC 9 cut(s) 167, 181, 253, 747, 805, 880, 958, 1129, 1314
BstMAI GTCTC 1 cut(s) 888
BstMBI GATC 9 cut(s) 164, 178, 250, 744, 802, 877, 955, 1126, 1311
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 5 cut(s) 127, 413, 924, 1237, 1362
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 658
BstPAI GACNNNNGTC 1 cut(s) 446
BstSCI CCNGG 2 cut(s) 139, 976
BstX2I RGATCY 1 cut(s) 744
BstXI CCANNNNNNTGG 2 cut(s) 268, 513
BstYI RGATCY 1 cut(s) 744
BsuI GTATCC 2 cut(s) 712, 1141
BsuRI GGCC 2 cut(s) 260, 761
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 4 cut(s) 71, 189, 332, 769
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 1375
CfoI GCGC 2 cut(s) 582, 636
Cfr10I RCCGGY 1 cut(s) 1033
Cfr13I GGNCC 1 cut(s) 759
Csp6I GTAC 1 cut(s) 396
CspAI ACCGGT 1 cut(s) 1033
CviAII CATG 2 cut(s) 655, 756
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 8 cut(s) 155, 348, 369, 436, 630, 637, 844, 972
DpnI GATC 9 cut(s) 166, 180, 252, 746, 804, 879, 957, 1128, 1313
DpnII GATC 9 cut(s) 164, 178, 250, 744, 802, 877, 955, 1126, 1311
EaeI YGGCCR 1 cut(s) 258
EciI GGCGGA 1 cut(s) 1036
Ecl136II GAGCTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 735
Eco24I GRGCYC 1 cut(s) 290
Eco47III AGCGCT 1 cut(s) 635
Eco53kI GAGCTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 1182
Eco72I CACGTG 1 cut(s) 1048
Eco88I CYCGRG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 1244
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 2 cut(s) 658, 759
FaqI GGGAC 1 cut(s) 454
FatI CATG 2 cut(s) 654, 755
FauI CCCGC 2 cut(s) 180, 1145
FokI GGATG 4 cut(s) 58, 176, 319, 756
FriOI GRGCYC 1 cut(s) 290
GlaI GCGC 2 cut(s) 581, 635
GsuI CTGGAG 1 cut(s) 290
HaeII RGCGCY 2 cut(s) 583, 637
HaeIII GGCC 2 cut(s) 260, 761
HapII CCGG 3 cut(s) 623, 977, 1034
HhaI GCGC 2 cut(s) 582, 636
Hin1II CATG 2 cut(s) 658, 759
Hin6I GCGC 2 cut(s) 580, 634
HinP1I GCGC 2 cut(s) 580, 634
HindIII AAGCTT 1 cut(s) 1229
HinfI GANTC 9 cut(s) 80, 157, 236, 401, 626, 981, 1117, 1169, 1294
HpaII CCGG 3 cut(s) 623, 977, 1034
HphI GGTGA 2 cut(s) 1126, 1289
Hpy166II GTNNAC 1 cut(s) 423
Hpy188III TCNNGA 6 cut(s) 593, 623, 727, 887, 985, 1323
Hpy8I GTNNAC 1 cut(s) 423
HpyAV CCTTC 5 cut(s) 53, 549, 842, 1157, 1286
HpyCH4III ACNGT 3 cut(s) 448, 691, 1100
HpyCH4IV ACGT 3 cut(s) 510, 1047, 1217
HpyCH4V TGCA 5 cut(s) 283, 416, 536, 776, 952
HpyF10VI GCNNNNNNNGC 5 cut(s) 127, 413, 924, 1237, 1362
HpyF3I CTNAG 8 cut(s) 155, 348, 369, 436, 630, 637, 844, 972
HpySE526I ACGT 3 cut(s) 510, 1047, 1217
Hsp92II CATG 2 cut(s) 658, 759
HspAI GCGC 2 cut(s) 580, 634
Kpn2I TCCGGA 1 cut(s) 622
Kzo9I GATC 9 cut(s) 164, 178, 250, 744, 802, 877, 955, 1126, 1311
LmnI GCTCC 4 cut(s) 105, 219, 739, 1054
MaeII ACGT 3 cut(s) 510, 1047, 1217
MaeIII GTNAC 3 cut(s) 150, 936, 1132
MalI GATC 9 cut(s) 166, 180, 252, 746, 804, 879, 957, 1128, 1313
MbiI CCGCTC 1 cut(s) 742
MboI GATC 9 cut(s) 164, 178, 250, 744, 802, 877, 955, 1126, 1311
MboII GAAGA 6 cut(s) 16, 47, 50, 287, 1064, 1259
MflI RGATCY 1 cut(s) 744
MhlI GDGCHC 1 cut(s) 290
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 9 cut(s) 208, 313, 328, 544, 862, 1010, 1067, 1076, 1244
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 2 cut(s) 166, 1288
MmeI TCCRAC 2 cut(s) 140, 1304
MnlI CCTC 8 cut(s) 86, 211, 265, 510, 593, 901, 981, 1045
Mox20I TGGCCA 1 cut(s) 260
MroI TCCGGA 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 1071
MscI TGGCCA 1 cut(s) 260
MseI TTAA 3 cut(s) 999, 1106, 1214
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 1089
MspI CCGG 3 cut(s) 623, 977, 1034
MspR9I CCNGG 2 cut(s) 141, 978
Mva1269I GAATGC 1 cut(s) 135
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 5 cut(s) 127, 413, 924, 1237, 1362
NciI CCSGG 1 cut(s) 978
NdeII GATC 9 cut(s) 164, 178, 250, 744, 802, 877, 955, 1126, 1311
NlaIII CATG 2 cut(s) 658, 759
NlaIV GGNNCC 2 cut(s) 746, 926
NmuCI GTSAC 1 cut(s) 1132
NspI RCATGY 1 cut(s) 658
PaeR7I CTCGAG 1 cut(s) 584
PctI GAATGC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 1071
PfeI GAWTC 7 cut(s) 80, 236, 401, 626, 981, 1117, 1169
PflMI CCANNNNNTGG 1 cut(s) 1255
PinAI ACCGGT 1 cut(s) 1033
Ple19I CGATCG 1 cut(s) 253
PleI GAGTC 2 cut(s) 165, 1288
PmaCI CACGTG 1 cut(s) 1048
PmlI CACGTG 1 cut(s) 1048
PpsI GAGTC 2 cut(s) 165, 1288
Ppu21I YACGTR 1 cut(s) 1048
PshAI GACNNNNGTC 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 139
PspCI CACGTG 1 cut(s) 1048
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 746, 926
PspPI GGNCC 1 cut(s) 759
PspXI VCTCGAGB 1 cut(s) 584
PsuI RGATCY 1 cut(s) 744
PvuI CGATCG 1 cut(s) 253
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SacI GAGCTC 1 cut(s) 290
SaqAI TTAA 3 cut(s) 999, 1106, 1214
Sau3AI GATC 9 cut(s) 164, 178, 250, 744, 802, 877, 955, 1126, 1311
Sau96I GGNCC 1 cut(s) 759
SchI GAGTC 2 cut(s) 166, 1288
ScrFI CCNGG 2 cut(s) 141, 978
SduI GDGCHC 1 cut(s) 290
Sfr274I CTCGAG 1 cut(s) 584
SlaI CTCGAG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 9 cut(s) 208, 313, 328, 544, 862, 1010, 1067, 1076, 1244
SsiI CCGC 5 cut(s) 173, 742, 1021, 1087, 1138
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 139, 976
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 3 cut(s) 448, 691, 1100
TaiI ACGT 3 cut(s) 513, 1050, 1220
TaqI TCGA 3 cut(s) 78, 585, 942
TasI AATT 9 cut(s) 208, 313, 328, 544, 862, 1010, 1067, 1076, 1244
TfiI GAWTC 7 cut(s) 80, 236, 401, 626, 981, 1117, 1169
Tru1I TTAA 3 cut(s) 999, 1106, 1214
Tru9I TTAA 3 cut(s) 999, 1106, 1214
TscAI CASTG 1 cut(s) 696
TseFI GTSAC 1 cut(s) 1132
Tsp45I GTSAC 1 cut(s) 1132
TspDTI ATGAA 8 cut(s) 17, 72, 228, 279, 321, 324, 1044, 1161
TspRI CASTG 1 cut(s) 696
Van91I CCANNNNNTGG 1 cut(s) 1255
XapI RAATTY 4 cut(s) 313, 328, 1067, 1244
XceI RCATGY 1 cut(s) 658
XhoI CTCGAG 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.