Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006239

Physical Location & Seq

Genomic Coordinates Forward (+)

10639864 .. 10647757

Gene Structure 7894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G179600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGAACAACAAGAGCAATCAAAGCTCCGACAGAGAAGAAAATCAGTCGAAGAAAGAAAATCCTATCTCAACCCTCGATTCAAGATTCAACCAAACCCTCAGAAATGTTCAAGGGTTGCTCAAAGGTCGTAGTATGCCTGGTAAAGTATTACTAACCAGGAGATCAAATGTGCTAGATCATTCAAAATTACAAGAACCCTCACTCAATTATGGAAGGAGCTTCTCATTCAATGATGCTGATACAAGTGATCACATAGCCAAGGCGTTAGAGGAAGAAGTTGAAAGCCTAAGCAATCCCAACAATAATGCAAATTCAAATAAGTTAAAATCATCAACTTCGAATGTTGAGAATCTTTCCAAAGGAGCTCAAAAATCCGTCATGGGAGCTAGAGCTACGGATTCTACAAGAGTTATGAAGTTCACAAAGGTCCTTTCAGGGACAACAGTCATATTAGAGAAGTTGCATGAGTTGGCTTGGAGTGGGGTACCACCATATATGCGGCCAGATGTATGGAGGCTTCTTTTGGGATATGCACCATCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAACGCCTTGAGTATCTTGACTGTGCTTCTCAGTACTATGACATTCCGGATACTGAGCGGTCAGAAGATGAGATAAATATGCTTCGCCAGATTGCTGTTGATTGCCCAAGAACTGTGCCAGATGTATCTTTCTTTCAGCAAGAGCAAGTCCAAAAATCCTTGGAGCGCATCCTTTACACATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGAATAAATGATCTTGTTACTCCCTTTCTAGTTGTTTTCTTGTCCGAATACTTAGATGGGAGTGTGGATAATTGGTCGATCTCCGATTTATCTCCTGATAAAATATCTAATATAGAGGCTGATTGCTATTGGTGCCTATCAAATTTACTAGAAGGTATGCAAGACCATTACACTTTTGCTCAGCCGGGAATCCAGAGGCTTGTGTTTAAGCTAAAGGAAGTGGTCAGGCGGATTGATGAACCTGTATCCAGACACGTGGAGGAGCAAGGGCTGGAATTTCTTCAATTTGCTTTCCGGTGGTTCAACTGTCTTTTAATACGCGAGATTCCTTTCCATCTCATTTCTCGTCTGTGGGATACCTATCTTGCCGAAGGAGATGCATTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAACGTGGTCAGATGAGCTTCTGAAGCTTGATTTCCAAGAGTTGGTTATGTTTCTTCAACACCTTCCCACTAATAACTGGACTCACCAAGAGCTGGAGATGGTGCTTTCAAGAGCTTTCATGTGGCACAGTATGTTCAAAAGCTCTCCTAGACATTTGGCCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

459

Amino Acids

52.88

Weight (kDa)

5.74

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30710
fragaria_vesca	FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760
malus_domestica	MD03G1229700.v1.1 MD04G1046900.v1.1 MD11G1250200.v1.1
prunus_persica	Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.4G179600_v2.0.a1 Prupe.4G179600_v2.0.a1
pyrus_communis	pycom03g17730 pycom04g04070
rosa_chinensis	RchiOBHm_Chr5g0033161
rosa_laevigata	RLG00000033452
rosa_multiflora	Rmu_sc0009377.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046810
rosa_rugosa	Rorug05G0137100
rosa_samantha	Rh5AG228900 Rh5BG230000 Rh5DG234700
rosa_wichuraiana	Rw5G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	2 cut(s)	484, 921
AccB7I	CCANNNNNTGG	2 cut(s)	1252, 1303
AccBSI	CCGCTC	1 cut(s)	631
AccII	CGCG	1 cut(s)	1110
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	3 cut(s)	499, 631, 1018
AcoI	YGGCCR	2 cut(s)	500, 1368
AcsI	RAATTY	3 cut(s)	310, 931, 1064
AcuI	CTGAAG	1 cut(s)	1253
AcvI	CACGTG	1 cut(s)	1045
AfaI	GTAC	2 cut(s)	486, 608
AfiI	CCNNNNNNNGG	3 cut(s)	776, 1252, 1303
AflIII	ACRYGT	1 cut(s)	1042
AjnI	CCWGG	2 cut(s)	136, 155
Alw21I	GWGCWC	1 cut(s)	367
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	3 cut(s)	500, 756, 1368
ApoI	RAATTY	3 cut(s)	310, 931, 1064
Asp700I	GAANNNNTTC	1 cut(s)	1068
Asp718I	GGTACC	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	2 cut(s)	427, 756
AsuC2I	CCSGG	1 cut(s)	975
AsuHPI	GGTGA	1 cut(s)	1286
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	1370
BanI	GGYRCC	2 cut(s)	484, 921
BanII	GRGCYC	1 cut(s)	367
BarI	GAAGNNNNNNTAC	2 cut(s)	501, 533
BbrPI	CACGTG	1 cut(s)	1045
Bbv12I	GWGCWC	1 cut(s)	367
BccI	CCATC	4 cut(s)	544, 839, 1131, 1303
BcgI	CGANNNNNNTGC	2 cut(s)	1148, 1182
BciT130I	CCWGG	2 cut(s)	138, 157
BciVI	GTATCC	3 cut(s)	616, 1045, 1138
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	975
BfaI	CTAG	5 cut(s)	173, 387, 818, 938, 1359
BfuI	GTATCC	3 cut(s)	616, 1045, 1138
BisI	GCNGC	1 cut(s)	500
BlpI	GCTNAGC	1 cut(s)	969
BlsI	GCNGC	1 cut(s)	501
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	3 cut(s)	138, 157, 975
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	427, 756
BmiI	GGNNCC	2 cut(s)	486, 923
BmrFI	CCNGG	3 cut(s)	138, 157, 975
BmsI	GCATC	3 cut(s)	223, 750, 1156
BoxI	GACNNNNGTC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	1325
Bpu10I	CCTNAGC	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	969
Bpu14I	TTCGAA	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	975
BsaAI	YACGTR	1 cut(s)	1045
BsaBI	GATNNNNATC	1 cut(s)	1149
BsaJI	CCNNGG	2 cut(s)	258, 732
BsaWI	WCCGGW	2 cut(s)	619, 1083
Bsc4I	CCNNNNNNNGG	3 cut(s)	776, 1252, 1303
Bse1I	ACTGG	2 cut(s)	1200, 1292
Bse3DI	GCAATG	1 cut(s)	1169
Bse8I	GATNNNNATC	1 cut(s)	1149
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	138, 157
BseDI	CCNNGG	2 cut(s)	258, 732
BseGI	GGATG	2 cut(s)	741, 766
BseJI	GATNNNNATC	1 cut(s)	1149
BseLI	CCNNNNNNNGG	3 cut(s)	776, 1252, 1303
BseMI	GCAATG	1 cut(s)	1169
BseMII	CTCAG	4 cut(s)	112, 617, 618, 983
BseNI	ACTGG	2 cut(s)	1200, 1292
BseRI	GAGGAG	1 cut(s)	1064
Bsh1236I	CGCG	1 cut(s)	1110
BshFI	GGCC	3 cut(s)	502, 758, 1370
BshNI	GGYRCC	2 cut(s)	484, 921
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	3 cut(s)	620, 974, 1084
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	3 cut(s)	776, 1252, 1303
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	3 cut(s)	502, 758, 1370
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	5 cut(s)	161, 175, 247, 799, 867
Bsp1720I	GCTNAGC	1 cut(s)	969
BspACI	CCGC	3 cut(s)	499, 631, 1018
BspANI	GGCC	3 cut(s)	502, 758, 1370
BspCNI	CTCAG	4 cut(s)	111, 616, 619, 982
BspEI	TCCGGA	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	1110
BspLI	GGNNCC	2 cut(s)	486, 923
BspT104I	TTCGAA	1 cut(s)	338
BspT107I	GGYRCC	2 cut(s)	484, 921
BsrBI	CCGCTC	1 cut(s)	631
BsrDI	GCAATG	1 cut(s)	1169
BsrI	ACTGG	2 cut(s)	1200, 1292
BssECI	CCNNGG	2 cut(s)	258, 732
BssMI	GATC	5 cut(s)	161, 175, 247, 799, 867
BssT1I	CCWWGG	2 cut(s)	258, 732
Bst2UI	CCWGG	2 cut(s)	138, 157
Bst4CI	ACNGT	5 cut(s)	445, 596, 688, 1097, 1340
BstBAI	YACGTR	1 cut(s)	1045
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	1372
BstDEI	CTNAG	7 cut(s)	98, 287, 566, 603, 627, 841, 969
BstF5I	GGATG	2 cut(s)	741, 766
BstFNI	CGCG	1 cut(s)	1110
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	5 cut(s)	164, 178, 250, 802, 870
BstMBI	GATC	5 cut(s)	161, 175, 247, 799, 867
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 921, 1234
BstNI	CCWGG	2 cut(s)	138, 157
BstPAI	GACNNNNGTC	1 cut(s)	443
BstSCI	CCNGG	3 cut(s)	136, 155, 973
BstUI	CGCG	1 cut(s)	1110
BstXI	CCANNNNNNTGG	2 cut(s)	510, 1045
BsuI	GTATCC	3 cut(s)	616, 1045, 1138
BsuRI	GGCC	3 cut(s)	502, 758, 1370
BtsCI	GGATG	2 cut(s)	741, 766
Cac8I	GCNNGC	1 cut(s)	1372
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	2 cut(s)	427, 756
Csp6I	GTAC	2 cut(s)	485, 607
CviAII	CATG	4 cut(s)	379, 464, 753, 1330
CviQI	GTAC	2 cut(s)	485, 607
DdeI	CTNAG	7 cut(s)	98, 287, 566, 603, 627, 841, 969
DpnI	GATC	5 cut(s)	163, 177, 249, 801, 869
DpnII	GATC	5 cut(s)	161, 175, 247, 799, 867
EaeI	YGGCCR	2 cut(s)	500, 1368
EciI	GGCGGA	1 cut(s)	1033
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	258, 732
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	1253
Eco72I	CACGTG	1 cut(s)	1045
EcoICRI	GAGCTC	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	136, 155
EcoT14I	CCWWGG	2 cut(s)	258, 732
EcoT22I	ATGCAT	1 cut(s)	1171
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	2 cut(s)	258, 732
FaeI	CATG	4 cut(s)	382, 467, 756, 1333
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	4 cut(s)	378, 463, 752, 1329
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	2 cut(s)	728, 753
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	5 cut(s)	173, 387, 818, 938, 1359
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	1325
HaeIII	GGCC	3 cut(s)	502, 758, 1370
HapII	CCGG	3 cut(s)	620, 974, 1084
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	4 cut(s)	382, 467, 756, 1333
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	1235
HinfI	GANTC	7 cut(s)	77, 84, 349, 398, 978, 1114, 1291
HpaII	CCGG	3 cut(s)	620, 974, 1084
HphI	GGTGA	1 cut(s)	1286
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	8 cut(s)	28, 101, 547, 637, 835, 874, 1222, 1233
Hpy188III	TCNNGA	7 cut(s)	81, 590, 620, 884, 982, 1038, 1320
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	6 cut(s)	207, 546, 564, 935, 1154, 1283
HpyCH4III	ACNGT	5 cut(s)	445, 596, 688, 1097, 1340
HpyCH4IV	ACGT	2 cut(s)	1044, 1214
HpyCH4V	TGCA	6 cut(s)	308, 463, 533, 773, 949, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 921, 1234
HpyF3I	CTNAG	7 cut(s)	98, 287, 566, 603, 627, 841, 969
HpySE526I	ACGT	2 cut(s)	1044, 1214
Hsp92II	CATG	4 cut(s)	382, 467, 756, 1333
HspAI	GCGC	1 cut(s)	739
Kpn2I	TCCGGA	1 cut(s)	619
KpnI	GGTACC	1 cut(s)	488
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	161, 175, 247, 799, 867
LmnI	GCTCC	6 cut(s)	29, 216, 362, 383, 736, 1051
LweI	GCATC	3 cut(s)	223, 750, 1156
MaeI	CTAG	5 cut(s)	173, 387, 818, 938, 1359
MaeII	ACGT	2 cut(s)	1044, 1214
MaeIII	GTNAC	1 cut(s)	805
MalI	GATC	5 cut(s)	163, 177, 249, 801, 869
MbiI	CCGCTC	1 cut(s)	631
MboI	GATC	5 cut(s)	161, 175, 247, 799, 867
MboII	GAAGA	6 cut(s)	47, 61, 284, 650, 1061, 1256
MhlI	GDGCHC	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	1370
MluCI	AATT	8 cut(s)	185, 205, 310, 541, 859, 931, 1064, 1073
MluNI	TGGCCA	1 cut(s)	1370
MlyI	GAGTC	1 cut(s)	1285
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	9 cut(s)	83, 107, 208, 262, 507, 550, 898, 978, 1042
Mox20I	TGGCCA	1 cut(s)	1370
Mph1103I	ATGCAT	1 cut(s)	1171
MroI	TCCGGA	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	1068
MscI	TGGCCA	1 cut(s)	1370
MseI	TTAA	4 cut(s)	323, 996, 1103, 1211
Msp20I	TGGCCA	1 cut(s)	1370
MspI	CCGG	3 cut(s)	620, 974, 1084
MspR9I	CCNGG	3 cut(s)	138, 157, 975
MvaI	CCWGG	2 cut(s)	138, 157
MvnI	CGCG	1 cut(s)	1110
MwoI	GCNNNNNNNGC	3 cut(s)	21, 921, 1234
NciI	CCSGG	1 cut(s)	975
NdeII	GATC	5 cut(s)	161, 175, 247, 799, 867
NlaIII	CATG	4 cut(s)	382, 467, 756, 1333
NlaIV	GGNNCC	2 cut(s)	486, 923
NsiI	ATGCAT	1 cut(s)	1171
NspV	TTCGAA	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	1068
PfeI	GAWTC	6 cut(s)	77, 84, 349, 398, 978, 1114
PflMI	CCANNNNNTGG	2 cut(s)	1252, 1303
PkrI	GCNGC	1 cut(s)	501
PleI	GAGTC	1 cut(s)	1285
PmaCI	CACGTG	1 cut(s)	1045
PmlI	CACGTG	1 cut(s)	1045
PpsI	GAGTC	1 cut(s)	1285
Ppu21I	YACGTR	1 cut(s)	1045
PpuMI	RGGWCCY	1 cut(s)	427
PshAI	GACNNNNGTC	1 cut(s)	443
Psp124BI	GAGCTC	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	136, 155
PspCI	CACGTG	1 cut(s)	1045
PspGI	CCWGG	2 cut(s)	136, 155
PspN4I	GGNNCC	2 cut(s)	486, 923
PspPI	GGNCC	2 cut(s)	427, 756
PspPPI	RGGWCCY	1 cut(s)	427
RsaI	GTAC	2 cut(s)	486, 608
RsaNI	GTAC	2 cut(s)	485, 607
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	4 cut(s)	323, 996, 1103, 1211
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	5 cut(s)	161, 175, 247, 799, 867
Sau96I	GGNCC	2 cut(s)	427, 756
ScaI	AGTACT	1 cut(s)	608
SchI	GAGTC	1 cut(s)	1285
ScrFI	CCNGG	3 cut(s)	138, 157, 975
SduI	GDGCHC	1 cut(s)	367
SfaNI	GCATC	3 cut(s)	223, 750, 1156
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	8 cut(s)	185, 205, 310, 541, 859, 931, 1064, 1073
SsiI	CCGC	3 cut(s)	499, 631, 1018
SspMI	CTAG	5 cut(s)	173, 387, 818, 938, 1359
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	3 cut(s)	136, 155, 973
StyI	CCWWGG	2 cut(s)	258, 732
TaaI	ACNGT	5 cut(s)	445, 596, 688, 1097, 1340
TaiI	ACGT	2 cut(s)	1047, 1217
TaqI	TCGA	5 cut(s)	47, 75, 338, 763, 866
TasI	AATT	8 cut(s)	185, 205, 310, 541, 859, 931, 1064, 1073
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	6 cut(s)	77, 84, 349, 398, 978, 1114
Tru1I	TTAA	4 cut(s)	323, 996, 1103, 1211
Tru9I	TTAA	4 cut(s)	323, 996, 1103, 1211
TspDTI	ATGAA	4 cut(s)	17, 428, 1041, 1318
TspGWI	ACGGA	2 cut(s)	364, 410
Van91I	CCANNNNNTGG	2 cut(s)	1252, 1303
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	3 cut(s)	310, 931, 1064
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	5 cut(s)	173, 387, 818, 938, 1359
ZrmI	AGTACT	1 cut(s)	608
Zsp2I	ATGCAT	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.