pycom03g17730

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
18842002 .. 18848122
6121 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g17730.10

Sequence Viewer

Length: 1365 bp
ATGAACAACAAGAGCAATCAGAGCTTCGACAGAGAAGACTCCAAGAAAGAAAGCGCAATCTCAACCCCCGATTCCAGATTCAACCAAACCCTCAGAAATGTTCAAGGGTTCCTCAAAGGTCGTAGTATTCCCGGTAAAGTGTTACTGACTAGGAGGTCAAACCTGCCGGATCCTTCAAAATTACAAGTGCCCTCTCCAAATTATGGAAGGAGCTTATCATTCAATGATGCTCAAACAAGTGATCGCAGGGCCTTGGAGGAAGACAACGAGGTTCTAGGCAACCCCAGCAATAATGAAAATTCAAATAAGTTAACATCATCAACCTCAAATGTTGACAATATTTCTAGAGGAGCTCAAAAATCTGCCATGGGAGCCAGAGCTACTGATTCTGCAAGAGTTATGAAGTTCACAAAAGTTCTTTCAGGGACAACAGTGATATTAGAGAAGTTGCGTGAGCTGGCTTGGAGTGGCGTACCACCATATATGCGGCCCGATGTATGGAGGCTTCTTTTGGGATATGCACCATCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTGCTTCTCAGTACTATGATATTCCGGATACTGAGCGTTCAGATGATGAGATAAACATGCTTCGTCAGATTGCTGTTGATTGCCCAAGAACTGTGCCAGATGTATCCTTCTTTCAGCAGGAGCAAGTCCAGAAATCCTTGGAGCGCATCCTTTATACCTGGGCAATTCGACATCCTGCAAGTGGATATGTTCAGGGAATAAATGATCTTGTCACTCCCTTTCTAGTTGTTTTCTTGTCAGAATACTTAGACGGGAGTGTGGATAATTGGTCGATCTCCGATCTGTCTCCTGATAAAATATCTAATATAGAGGCTGACTGCTATTGGTGCCTGTCAAATTTACTTGAAGGTATGCAAGATCATTACACTTTTGCTCAGCCGGGAATCCAGAGGCTTGTGTTTAAACTAAAGGAATTGGTCAGGCGGATTGATGAACCTGTATCGAGACATGTGGAGGAGCAAGGACTTGAATTTCTTCAATTTGCTTTTCGGTGGTTCAACTGTCTGCTAATACGCGAGATTCCTTTCAACCTTATTTCCCGTCTGTGGGATACATACCTAGCCGAAGGAGATGCATTGGCGGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAACGTGGTCAGAGGAGCTTCGGAAGCTTGATTTCCAAGAGTTGGTTATGTTTCTTCAACACCTTCCAACCCATAACTGGACTCACCAAGAACTCGAGATGGTGCTTTCAAGAGCTTTCATGTGGCACAGTATGTTCAAAAGCTCTCCTAGACACTTGGCCAGCTAA

Protein Analysis

455

Amino Acids

52.37

Weight (kDa)

5.86

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 154
Acc36I ACCTGC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 909
AccB7I CCANNNNNTGG 2 cut(s) 203, 1240
AccII CGCG 1 cut(s) 1098
AccIII TCCGGA 1 cut(s) 607
AciI CCGC 3 cut(s) 487, 1006, 1163
AclWI GGATC 2 cut(s) 164, 177
AcoI YGGCCR 1 cut(s) 1356
AcsI RAATTY 3 cut(s) 298, 919, 1052
AfaI GTAC 2 cut(s) 474, 596
AfiI CCNNNNNNNGG 7 cut(s) 203, 498, 764, 1128, 1129, 1240, 1275
AflIII ACRYGT 1 cut(s) 1030
AjnI CCWGG 1 cut(s) 740
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 2 cut(s) 873, 1021
AlwI GGATC 2 cut(s) 164, 177
Ama87I CYCGRG 1 cut(s) 1292
Aor13HI TCCGGA 1 cut(s) 607
AoxI GGCC 3 cut(s) 249, 488, 1356
ApoI RAATTY 3 cut(s) 298, 919, 1052
Asp700I GAANNNNTTC 1 cut(s) 1056
AspLEI GCGC 3 cut(s) 56, 567, 729
AspS9I GGNCC 2 cut(s) 249, 489
AsuC2I CCSGG 2 cut(s) 132, 963
AsuHPI GGTGA 1 cut(s) 1274
AvaI CYCGRG 1 cut(s) 1292
BaeGI GKGCMC 1 cut(s) 192
BalI TGGCCA 1 cut(s) 1358
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 909
BanII GRGCYC 1 cut(s) 355
BarI GAAGNNNNNNTAC 2 cut(s) 489, 521
BbsI GAAGAC 2 cut(s) 42, 267
Bbv12I GWGCWC 1 cut(s) 355
BccI CCATC 2 cut(s) 532, 1291
BcgI CGANNNNNNTGC 2 cut(s) 1136, 1170
BciT130I CCWGG 1 cut(s) 742
BciVI GTATCC 3 cut(s) 604, 697, 1126
BcnI CCSGG 2 cut(s) 132, 963
BcoDI GTCTC 2 cut(s) 873, 1021
BfaI CTAG 6 cut(s) 150, 275, 345, 806, 1142, 1347
BfoI RGCGCY 1 cut(s) 568
BfuAI ACCTGC 1 cut(s) 171
BfuI GTATCC 3 cut(s) 604, 697, 1126
BisI GCNGC 1 cut(s) 488
BlpI GCTNAGC 1 cut(s) 957
BlsI GCNGC 1 cut(s) 489
BmcAI AGTACT 1 cut(s) 596
Bme1390I CCNGG 3 cut(s) 132, 742, 963
BmeT110I CYCGRG 1 cut(s) 1292
BmgT120I GGNCC 2 cut(s) 249, 489
BmiI GGNNCC 4 cut(s) 110, 171, 373, 911
BmrFI CCNGG 3 cut(s) 132, 742, 963
BmsI GCATC 3 cut(s) 217, 738, 1144
BpiI GAAGAC 2 cut(s) 42, 267
Bpu1102I GCTNAGC 1 cut(s) 957
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 2 cut(s) 132, 963
BsaJI CCNNGG 4 cut(s) 252, 366, 720, 741
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 7 cut(s) 203, 498, 764, 1128, 1129, 1240, 1275
Bse1I ACTGG 2 cut(s) 1188, 1280
BseAI TCCGGA 1 cut(s) 607
BseBI CCWGG 1 cut(s) 742
BseDI CCNNGG 4 cut(s) 252, 366, 720, 741
BseGI GGATG 2 cut(s) 729, 754
BseLI CCNNNNNNNGG 7 cut(s) 203, 498, 764, 1128, 1129, 1240, 1275
BseMII CTCAG 4 cut(s) 106, 605, 606, 971
BseNI ACTGG 2 cut(s) 1188, 1280
BseRI GAGGAG 3 cut(s) 363, 1052, 1226
BseSI GKGCMC 1 cut(s) 192
BseYI CCCAGC 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 1098
BshFI GGCC 3 cut(s) 251, 490, 1358
BshNI GGYRCC 1 cut(s) 909
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 1292
BsiSI CCGG 4 cut(s) 132, 167, 608, 962
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 7 cut(s) 203, 498, 764, 1128, 1129, 1240, 1275
BsmAI GTCTC 2 cut(s) 873, 1021
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 3 cut(s) 251, 490, 1358
BsoBI CYCGRG 1 cut(s) 1292
Bsp1286I GDGCHC 2 cut(s) 192, 355
Bsp13I TCCGGA 1 cut(s) 607
Bsp143I GATC 6 cut(s) 169, 241, 787, 855, 862, 940
Bsp1720I GCTNAGC 1 cut(s) 957
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 3 cut(s) 487, 1006, 1163
BspANI GGCC 3 cut(s) 251, 490, 1358
BspCNI CTCAG 4 cut(s) 105, 604, 607, 970
BspEI TCCGGA 1 cut(s) 607
BspFNI CGCG 1 cut(s) 1098
BspLI GGNNCC 4 cut(s) 110, 171, 373, 911
BspMI ACCTGC 1 cut(s) 171
BspPI GGATC 2 cut(s) 164, 177
BspT107I GGYRCC 1 cut(s) 909
BsrI ACTGG 2 cut(s) 1188, 1280
BssECI CCNNGG 4 cut(s) 252, 366, 720, 741
BssMI GATC 6 cut(s) 169, 241, 787, 855, 862, 940
BssT1I CCWWGG 3 cut(s) 252, 366, 720
Bst2UI CCWGG 1 cut(s) 742
Bst4CI ACNGT 5 cut(s) 433, 584, 676, 1085, 1328
BstC8I GCNNGC 2 cut(s) 459, 1360
BstDEI CTNAG 6 cut(s) 92, 554, 591, 615, 829, 957
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 729, 754
BstFNI CGCG 1 cut(s) 1098
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 3 cut(s) 56, 567, 729
BstKTI GATC 6 cut(s) 172, 244, 790, 858, 865, 943
BstMAI GTCTC 2 cut(s) 873, 1021
BstMBI GATC 6 cut(s) 169, 241, 787, 855, 862, 940
BstMWI GCNNNNNNNGC 5 cut(s) 21, 285, 371, 909, 1222
BstNI CCWGG 1 cut(s) 742
BstNSI RCATGY 2 cut(s) 643, 1034
BstSCI CCNGG 3 cut(s) 130, 740, 961
BstSLI GKGCMC 1 cut(s) 192
BstUI CGCG 1 cut(s) 1098
BstV2I GAAGAC 2 cut(s) 42, 267
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuI GTATCC 3 cut(s) 604, 697, 1126
BsuRI GGCC 3 cut(s) 251, 490, 1358
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 2 cut(s) 729, 754
BtsIMutI CAGTG 1 cut(s) 438
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 459, 1360
CfoI GCGC 3 cut(s) 56, 567, 729
Cfr13I GGNCC 2 cut(s) 249, 489
Csp6I GTAC 2 cut(s) 473, 595
CviAII CATG 4 cut(s) 367, 640, 1031, 1318
CviQI GTAC 2 cut(s) 473, 595
DdeI CTNAG 6 cut(s) 92, 554, 591, 615, 829, 957
DpnI GATC 6 cut(s) 171, 243, 789, 857, 864, 942
DpnII GATC 6 cut(s) 169, 241, 787, 855, 862, 940
DraI TTTAAA 1 cut(s) 985
DrdI GACNNNNNNGTC 1 cut(s) 154
DseDI GACNNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 1356
EciI GGCGGA 2 cut(s) 1021, 1178
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 3 cut(s) 252, 366, 720
Eco24I GRGCYC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 1292
EcoICRI GAGCTC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 740
EcoT14I CCWWGG 3 cut(s) 252, 366, 720
EcoT22I ATGCAT 1 cut(s) 1159
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 3 cut(s) 252, 366, 720
FaeI CATG 4 cut(s) 370, 643, 1034, 1321
FaqI GGGAC 1 cut(s) 439
FatI CATG 4 cut(s) 366, 639, 1030, 1317
Fnu4HI GCNGC 1 cut(s) 488
FokI GGATG 2 cut(s) 716, 741
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 488
FspBI CTAG 6 cut(s) 150, 275, 345, 806, 1142, 1347
GlaI GCGC 3 cut(s) 55, 566, 728
GluI GCNGC 1 cut(s) 488
GsaI CCCAGC 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 3 cut(s) 251, 490, 1358
HapII CCGG 4 cut(s) 132, 167, 608, 962
HhaI GCGC 3 cut(s) 56, 567, 729
Hin1II CATG 4 cut(s) 370, 643, 1034, 1321
Hin6I GCGC 3 cut(s) 54, 565, 727
HinP1I GCGC 3 cut(s) 54, 565, 727
HincII GTYRAC 2 cut(s) 312, 334
HindII GTYRAC 2 cut(s) 312, 334
HindIII AAGCTT 1 cut(s) 1223
HinfI GANTC 7 cut(s) 38, 71, 78, 386, 966, 1102, 1279
HpaI GTTAAC 1 cut(s) 312
HpaII CCGG 4 cut(s) 132, 167, 608, 962
HphI GGTGA 1 cut(s) 1274
Hpy166II GTNNAC 3 cut(s) 312, 334, 408
Hpy188I TCNGA 9 cut(s) 21, 95, 535, 625, 651, 823, 862, 1210, 1221
Hpy8I GTNNAC 3 cut(s) 312, 334, 408
HpyAV CCTTC 8 cut(s) 183, 201, 534, 552, 700, 923, 1142, 1271
HpyCH4III ACNGT 5 cut(s) 433, 584, 676, 1085, 1328
HpyCH4IV ACGT 1 cut(s) 1202
HpyCH4V TGCA 5 cut(s) 392, 521, 761, 937, 1157
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 285, 371, 909, 1222
HpyF3I CTNAG 6 cut(s) 92, 554, 591, 615, 829, 957
HpySE526I ACGT 1 cut(s) 1202
Hsp92II CATG 4 cut(s) 370, 643, 1034, 1321
HspAI GCGC 3 cut(s) 54, 565, 727
Kpn2I TCCGGA 1 cut(s) 607
KspAI GTTAAC 1 cut(s) 312
Kzo9I GATC 6 cut(s) 169, 241, 787, 855, 862, 940
LmnI GCTCC 7 cut(s) 210, 350, 371, 703, 724, 1039, 1213
LweI GCATC 3 cut(s) 217, 738, 1144
MaeI CTAG 6 cut(s) 150, 275, 345, 806, 1142, 1347
MaeII ACGT 1 cut(s) 1202
MaeIII GTNAC 2 cut(s) 141, 793
MalI GATC 6 cut(s) 171, 243, 789, 857, 864, 942
MboI GATC 6 cut(s) 169, 241, 787, 855, 862, 940
MboII GAAGA 4 cut(s) 47, 272, 1049, 1244
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 2 cut(s) 192, 355
MlsI TGGCCA 1 cut(s) 1358
MluNI TGGCCA 1 cut(s) 1358
MlyI GAGTC 2 cut(s) 32, 1273
MmeI TCCRAC 1 cut(s) 1289
Mox20I TGGCCA 1 cut(s) 1358
Mph1103I ATGCAT 1 cut(s) 1159
MroI TCCGGA 1 cut(s) 607
MroXI GAANNNNTTC 1 cut(s) 1056
MscI TGGCCA 1 cut(s) 1358
MseI TTAA 3 cut(s) 311, 984, 1199
Msp20I TGGCCA 1 cut(s) 1358
MspI CCGG 4 cut(s) 132, 167, 608, 962
MspR9I CCNGG 3 cut(s) 132, 742, 963
MssI GTTTAAAC 1 cut(s) 985
MvaI CCWGG 1 cut(s) 742
MvnI CGCG 1 cut(s) 1098
MwoI GCNNNNNNNGC 5 cut(s) 21, 285, 371, 909, 1222
NciI CCSGG 2 cut(s) 132, 963
NcoI CCATGG 1 cut(s) 366
NdeII GATC 6 cut(s) 169, 241, 787, 855, 862, 940
NlaIII CATG 4 cut(s) 370, 643, 1034, 1321
NlaIV GGNNCC 4 cut(s) 110, 171, 373, 911
NmuCI GTSAC 1 cut(s) 793
NsiI ATGCAT 1 cut(s) 1159
NspI RCATGY 2 cut(s) 643, 1034
PaeR7I CTCGAG 1 cut(s) 1292
PciI ACATGT 1 cut(s) 1030
PdmI GAANNNNTTC 1 cut(s) 1056
PfeI GAWTC 5 cut(s) 71, 78, 386, 966, 1102
PflMI CCANNNNNTGG 2 cut(s) 203, 1240
PkrI GCNGC 1 cut(s) 489
PleI GAGTC 2 cut(s) 32, 1273
PmeI GTTTAAAC 1 cut(s) 985
PpsI GAGTC 2 cut(s) 32, 1273
PscI ACATGT 1 cut(s) 1030
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 740
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 740
PspN4I GGNNCC 4 cut(s) 110, 171, 373, 911
PspPI GGNCC 2 cut(s) 249, 489
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 2 cut(s) 474, 596
RsaNI GTAC 2 cut(s) 473, 595
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 3 cut(s) 311, 984, 1199
SatI GCNGC 1 cut(s) 488
Sau3AI GATC 6 cut(s) 169, 241, 787, 855, 862, 940
Sau96I GGNCC 2 cut(s) 249, 489
ScaI AGTACT 1 cut(s) 596
SchI GAGTC 2 cut(s) 32, 1273
ScrFI CCNGG 3 cut(s) 132, 742, 963
SduI GDGCHC 2 cut(s) 192, 355
SfaNI GCATC 3 cut(s) 217, 738, 1144
Sfr274I CTCGAG 1 cut(s) 1292
SlaI CTCGAG 1 cut(s) 1292
SmlI CTYRAG 2 cut(s) 569, 1292
SmoI CTYRAG 2 cut(s) 569, 1292
SsiI CCGC 3 cut(s) 487, 1006, 1163
SspI AATATT 1 cut(s) 340
SspMI CTAG 6 cut(s) 150, 275, 345, 806, 1142, 1347
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 3 cut(s) 130, 740, 961
StyI CCWWGG 3 cut(s) 252, 366, 720
TaaI ACNGT 5 cut(s) 433, 584, 676, 1085, 1328
TaiI ACGT 1 cut(s) 1205
TaqI TCGA 5 cut(s) 27, 751, 854, 1025, 1293
TatI WGTACW 1 cut(s) 594
TauI GCSGC 1 cut(s) 490
TfiI GAWTC 5 cut(s) 71, 78, 386, 966, 1102
Tru1I TTAA 3 cut(s) 311, 984, 1199
Tru9I TTAA 3 cut(s) 311, 984, 1199
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 1 cut(s) 793
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 5 cut(s) 17, 309, 416, 1029, 1306
TspRI CASTG 1 cut(s) 438
Van91I CCANNNNNTGG 2 cut(s) 203, 1240
XapI RAATTY 3 cut(s) 298, 919, 1052
XbaI TCTAGA 1 cut(s) 344
XceI RCATGY 2 cut(s) 643, 1034
XcmI CCANNNNNNNNNTGG 1 cut(s) 1272
XhoI CTCGAG 1 cut(s) 1292
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 6 cut(s) 150, 275, 345, 806, 1142, 1347
ZrmI AGTACT 1 cut(s) 596
Zsp2I ATGCAT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.