Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006239

Physical Location & Seq

Genomic Coordinates Forward (+)

19906387 .. 19913745

Gene Structure 7359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G201500.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGAAGAACAACAGCAGCCAAAGCTACAACAGTGAAGAAAACAACTCCAAGAAAGAAAGTGCTTTCTCAACCCTGGATTCAAGATTCAACCAAACCCTCCGAAATGTTCAAGGGTTGCTCAAAGGGCGTAGTATTCCTGGTAAAGTGTTACTGAGTAGATCAGACCCACTAGATCAGTCAAACATACAAGAGCACTCTCCAAATTATGAAAGGAGCTTCTCATACAATGATGCTGAAACAAGTGATCGCATGTCCAAGGACCTAGAGGAAGAAGTGCAGAACCCGAACAAGCCAAGCAATAATGCAAATTCAAATGGCCTAAATTCATCAACCTCAAATATTGAGAATACTTCCAAAGAAGCACAAAAATCCACCATGGGTGCTAGAGCTACTGATTCTGCAAGAATTATAAAGTTCACAAAGGTCCTTTCAGGGACAACAGTCATACTGGAGAAGTTGCGTGAGTTGGCTTGGAGTGGCATACCACCATATATGCGACCTGATGTATGGAGACTTCTTTTGGGATATGCACCACCTAATTCAGATAGAAGGGGGGGAGTTCTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCCCAGTATTATGACATTCCAGATACTGAGCGTTCAGATGATGAGATAAACATGCTTCGCCAGATTGCTGTCGATTGCCCTAGAACTGTGCCAGATGTATCTTTTTTTCAGCAAGCTCAAGTCCAGAAATCCTTGGAACGCATCCTTTACACATGGGCCATTAGACATCCTGCGAGTGGATATGTTCAGGGAATAAATGACCTTGTTACTCCCTTTCTAGTCGTTTTCTTATCAGAATACTTAGAAGGGAGTGTGGATAGTTGGTCAATCTCTGATCTGTCTCCTGATAAAATATCTATCATAGAGGCTGATTGCTATTGGTGCCTATCAAAATTACTTGATGGTATGCAAGACCATTACACATTTGCCCAGCCAGGAATCCAGAGGCTTGTGTTTAAGCTAAAGGAAGTGGTCAGGCGGATTGATGAACCGGTATCTACACACATGGAGGAGCAAGGGCTAGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTTTAATACGTGAGATTCCTTTCCATCTTATTACTCGCCTATGGGATACTTATCTTGCTGAAGGAGATGCATTGCCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAACGTGGTCGGATAAGCTTCAGAAGCTTGATTTCCAAGAGTTGGTTATGTTTCTTCAACACCTTCCAACTAATAACTGGACTCACCAAGAGCTAGAGATGGTGCTTTCAAGAGCTTTCATGTGGCACAGTATGTTCAATAGCTCTCCTAGCCATTTAGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

458

Amino Acids

52.65

Weight (kDa)

5.43

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30710
fragaria_vesca	FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760
malus_domestica	MD03G1229700.v1.1 MD04G1046900.v1.1 MD11G1250200.v1.1
prunus_persica	Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.4G179600_v2.0.a1 Prupe.4G179600_v2.0.a1
pyrus_communis	pycom03g17730 pycom04g04070
rosa_chinensis	RchiOBHm_Chr5g0033161
rosa_laevigata	RLG00000033452
rosa_multiflora	Rmu_sc0009377.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046810
rosa_rugosa	Rorug05G0137100
rosa_samantha	Rh5AG228900 Rh5BG230000 Rh5DG234700
rosa_wichuraiana	Rw5G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	918
AccB7I	CCANNNNNTGG	1 cut(s)	1249
AciI	CCGC	2 cut(s)	1015, 1081
AcsI	RAATTY	3 cut(s)	307, 322, 1061
AcuI	CTGAAG	2 cut(s)	1176, 1211
AfiI	CCNNNNNNNGG	2 cut(s)	773, 1249
AgeI	ACCGGT	1 cut(s)	1027
AgsI	TTSAA	9 cut(s)	81, 88, 110, 312, 1070, 1090, 1265, 1317, 1345
AjnI	CCWGG	3 cut(s)	72, 136, 970
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	505, 882
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	2 cut(s)	316, 753
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	3 cut(s)	307, 322, 1061
AsiGI	ACCGGT	1 cut(s)	1027
Asp700I	GAANNNNTTC	1 cut(s)	1065
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	3 cut(s)	259, 424, 753
AsuHPI	GGTGA	1 cut(s)	1283
AvaII	GGWCC	2 cut(s)	259, 424
BanI	GGYRCC	1 cut(s)	918
BarI	GAAGNNNNNNTAC	2 cut(s)	498, 530
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	3 cut(s)	932, 1128, 1300
BciT130I	CCWGG	3 cut(s)	74, 138, 972
BciVI	GTATCC	1 cut(s)	1135
BcoDI	GTCTC	2 cut(s)	505, 882
BfaI	CTAG	8 cut(s)	170, 263, 384, 678, 815, 1058, 1301, 1356
BfoI	RGCGCY	1 cut(s)	577
BfuI	GTATCC	1 cut(s)	1135
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	3 cut(s)	74, 138, 972
Bme18I	GGWCC	2 cut(s)	259, 424
BmgT120I	GGNCC	3 cut(s)	259, 424, 753
BmiI	GGNNCC	1 cut(s)	920
BmrFI	CCNGG	3 cut(s)	74, 138, 972
BmrI	ACTGGG	1 cut(s)	595
BmsI	GCATC	3 cut(s)	220, 747, 1153
BmuI	ACTGGG	1 cut(s)	595
BoxI	GACNNNNGTC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	470
BpuEI	CTTGAG	2 cut(s)	599, 699
BsaAI	YACGTR	1 cut(s)	1106
BsaBI	GATNNNNATC	1 cut(s)	1146
BsaJI	CCNNGG	4 cut(s)	72, 255, 375, 729
BsaWI	WCCGGW	1 cut(s)	1027
Bsc4I	CCNNNNNNNGG	2 cut(s)	773, 1249
Bse118I	RCCGGY	1 cut(s)	1027
Bse1I	ACTGG	4 cut(s)	453, 601, 1197, 1289
Bse3DI	GCAATG	1 cut(s)	1166
Bse8I	GATNNNNATC	1 cut(s)	1146
BseBI	CCWGG	3 cut(s)	74, 138, 972
BseDI	CCNNGG	4 cut(s)	72, 255, 375, 729
BseGI	GGATG	2 cut(s)	738, 763
BseJI	GATNNNNATC	1 cut(s)	1146
BseLI	CCNNNNNNNGG	2 cut(s)	773, 1249
BseMI	GCAATG	1 cut(s)	1166
BseMII	CTCAG	2 cut(s)	143, 615
BseNI	ACTGG	4 cut(s)	453, 601, 1197, 1289
BseRI	GAGGAG	1 cut(s)	1061
BseXI	GCAGC	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	966
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	2 cut(s)	318, 755
BshNI	GGYRCC	1 cut(s)	918
BshTI	ACCGGT	1 cut(s)	1027
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	1028
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	773, 1249
BsmAI	GTCTC	2 cut(s)	505, 882
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	2 cut(s)	318, 755
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	158, 172, 244, 871
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	2 cut(s)	1015, 1081
BspANI	GGCC	2 cut(s)	318, 755
BspCNI	CTCAG	2 cut(s)	144, 616
BspLI	GGNNCC	1 cut(s)	920
BspT107I	GGYRCC	1 cut(s)	918
BsrDI	GCAATG	1 cut(s)	1166
BsrFI	RCCGGY	1 cut(s)	1027
BsrI	ACTGG	4 cut(s)	453, 601, 1197, 1289
BssAI	RCCGGY	1 cut(s)	1027
BssECI	CCNNGG	4 cut(s)	72, 255, 375, 729
BssMI	GATC	4 cut(s)	158, 172, 244, 871
BssT1I	CCWWGG	3 cut(s)	255, 375, 729
Bst2UI	CCWGG	3 cut(s)	74, 138, 972
Bst4CI	ACNGT	6 cut(s)	32, 442, 593, 685, 1094, 1337
BstBAI	YACGTR	1 cut(s)	1106
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	3 cut(s)	152, 624, 838
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	738, 763
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	4 cut(s)	161, 175, 247, 874
BstMAI	GTCTC	2 cut(s)	505, 882
BstMBI	GATC	4 cut(s)	158, 172, 244, 871
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 124, 918, 1231, 1356
BstNI	CCWGG	3 cut(s)	74, 138, 972
BstNSI	RCATGY	2 cut(s)	253, 652
BstPAI	GACNNNNGTC	1 cut(s)	440
BstSCI	CCNGG	3 cut(s)	72, 136, 970
BstV1I	GCAGC	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	1135
BsuRI	GGCC	2 cut(s)	318, 755
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	738, 763
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	711
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	576
Cfr10I	RCCGGY	1 cut(s)	1027
Cfr13I	GGNCC	3 cut(s)	259, 424, 753
CspAI	ACCGGT	1 cut(s)	1027
CviAII	CATG	6 cut(s)	250, 376, 649, 750, 1042, 1327
DdeI	CTNAG	3 cut(s)	152, 624, 838
DpnI	GATC	4 cut(s)	160, 174, 246, 873
DpnII	GATC	4 cut(s)	158, 172, 244, 871
EciI	GGCGGA	1 cut(s)	1030
Eco130I	CCWWGG	3 cut(s)	255, 375, 729
Eco47I	GGWCC	2 cut(s)	259, 424
Eco57I	CTGAAG	2 cut(s)	1176, 1211
EcoO109I	RGGNCCY	2 cut(s)	259, 424
EcoRII	CCWGG	3 cut(s)	72, 136, 970
EcoT14I	CCWWGG	3 cut(s)	255, 375, 729
EcoT22I	ATGCAT	1 cut(s)	1168
ErhI	CCWWGG	3 cut(s)	255, 375, 729
FaeI	CATG	6 cut(s)	253, 379, 652, 753, 1045, 1330
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	6 cut(s)	249, 375, 648, 749, 1041, 1326
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	2 cut(s)	725, 750
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	8 cut(s)	170, 263, 384, 678, 815, 1058, 1301, 1356
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	1 cut(s)	16
GsaI	CCCAGC	1 cut(s)	970
GsuI	CTGGAG	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	577
HaeIII	GGCC	2 cut(s)	318, 755
HapII	CCGG	1 cut(s)	1028
HhaI	GCGC	1 cut(s)	576
Hin1II	CATG	6 cut(s)	253, 379, 652, 753, 1045, 1330
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HindIII	AAGCTT	2 cut(s)	1223, 1232
HinfI	GANTC	6 cut(s)	77, 84, 395, 975, 1111, 1288
HpaII	CCGG	1 cut(s)	1028
HphI	GGTGA	1 cut(s)	1283
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	9 cut(s)	101, 163, 544, 564, 634, 832, 871, 1219, 1230
Hpy188III	TCNNGA	7 cut(s)	81, 587, 617, 721, 881, 979, 1317
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	4 cut(s)	543, 836, 1151, 1280
HpyCH4III	ACNGT	6 cut(s)	32, 442, 593, 685, 1094, 1337
HpyCH4IV	ACGT	2 cut(s)	1105, 1211
HpyCH4V	TGCA	6 cut(s)	277, 305, 401, 530, 946, 1166
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 124, 918, 1231, 1356
HpyF3I	CTNAG	3 cut(s)	152, 624, 838
HpySE526I	ACGT	2 cut(s)	1105, 1211
Hsp92II	CATG	6 cut(s)	253, 379, 652, 753, 1045, 1330
HspAI	GCGC	1 cut(s)	574
Kzo9I	GATC	4 cut(s)	158, 172, 244, 871
LmnI	GCTCC	2 cut(s)	213, 1048
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	3 cut(s)	220, 747, 1153
MaeI	CTAG	8 cut(s)	170, 263, 384, 678, 815, 1058, 1301, 1356
MaeII	ACGT	2 cut(s)	1105, 1211
MaeIII	GTNAC	2 cut(s)	147, 802
MalI	GATC	4 cut(s)	160, 174, 246, 873
MboI	GATC	4 cut(s)	158, 172, 244, 871
MboII	GAAGA	5 cut(s)	16, 47, 281, 1058, 1253
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	8 cut(s)	202, 307, 322, 405, 538, 929, 1061, 1070
MlyI	GAGTC	1 cut(s)	1282
MmeI	TCCRAC	2 cut(s)	1197, 1298
MnlI	CCTC	6 cut(s)	107, 259, 343, 895, 975, 1039
Mph1103I	ATGCAT	1 cut(s)	1168
MroXI	GAANNNNTTC	1 cut(s)	1065
MseI	TTAA	3 cut(s)	993, 1100, 1208
MspA1I	CMGCKG	1 cut(s)	1083
MspI	CCGG	1 cut(s)	1028
MspR9I	CCNGG	3 cut(s)	74, 138, 972
MvaI	CCWGG	3 cut(s)	74, 138, 972
MwoI	GCNNNNNNNGC	5 cut(s)	21, 124, 918, 1231, 1356
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	4 cut(s)	158, 172, 244, 871
NlaIII	CATG	6 cut(s)	253, 379, 652, 753, 1045, 1330
NlaIV	GGNNCC	1 cut(s)	920
NsiI	ATGCAT	1 cut(s)	1168
NspI	RCATGY	2 cut(s)	253, 652
PdmI	GAANNNNTTC	1 cut(s)	1065
PfeI	GAWTC	5 cut(s)	77, 84, 395, 975, 1111
PflMI	CCANNNNNTGG	1 cut(s)	1249
PinAI	ACCGGT	1 cut(s)	1027
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	1282
PpsI	GAGTC	1 cut(s)	1282
Ppu21I	YACGTR	1 cut(s)	1106
PpuMI	RGGWCCY	2 cut(s)	259, 424
PshAI	GACNNNNGTC	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	410
Psp5II	RGGWCCY	2 cut(s)	259, 424
Psp6I	CCWGG	3 cut(s)	72, 136, 970
PspFI	CCCAGC	1 cut(s)	966
PspGI	CCWGG	3 cut(s)	72, 136, 970
PspN4I	GGNNCC	1 cut(s)	920
PspPI	GGNCC	3 cut(s)	259, 424, 753
PspPPI	RGGWCCY	2 cut(s)	259, 424
PstNI	CAGNNNCTG	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	993, 1100, 1208
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	4 cut(s)	158, 172, 244, 871
Sau96I	GGNCC	3 cut(s)	259, 424, 753
SchI	GAGTC	1 cut(s)	1282
ScrFI	CCNGG	3 cut(s)	74, 138, 972
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	3 cut(s)	220, 747, 1153
SinI	GGWCC	2 cut(s)	259, 424
SmlI	CTYRAG	2 cut(s)	578, 714
SmoI	CTYRAG	2 cut(s)	578, 714
Sse9I	AATT	8 cut(s)	202, 307, 322, 405, 538, 929, 1061, 1070
SsiI	CCGC	2 cut(s)	1015, 1081
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	8 cut(s)	170, 263, 384, 678, 815, 1058, 1301, 1356
StyD4I	CCNGG	3 cut(s)	72, 136, 970
StyI	CCWWGG	3 cut(s)	255, 375, 729
TaaI	ACNGT	6 cut(s)	32, 442, 593, 685, 1094, 1337
TaiI	ACGT	2 cut(s)	1108, 1214
TaqI	TCGA	1 cut(s)	669
TasI	AATT	8 cut(s)	202, 307, 322, 405, 538, 929, 1061, 1070
TfiI	GAWTC	5 cut(s)	77, 84, 395, 975, 1111
Tru1I	TTAA	3 cut(s)	993, 1100, 1208
Tru9I	TTAA	3 cut(s)	993, 1100, 1208
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	5 cut(s)	17, 222, 315, 1038, 1315
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	1249
VpaK11BI	GGWCC	2 cut(s)	259, 424
XapI	RAATTY	3 cut(s)	307, 322, 1061
XceI	RCATGY	2 cut(s)	253, 652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1281
XmnI	GAANNNNTTC	1 cut(s)	1065
XspI	CTAG	8 cut(s)	170, 263, 384, 678, 815, 1058, 1301, 1356
Zsp2I	ATGCAT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.