Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006239

Physical Location & Seq

Genomic Coordinates Reverse (-)

66214617 .. 66221590

Gene Structure 6974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAAGAACAACAACAACAACAACAACAAGAGCAATCAAAGCTCTGGTGGAGAAGAGCATCACTCCCAAACCCCTGAATCAAGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTGCTCAAAGGTCGCAGTATGCCGGGGAAAGTGTTACTGACTAGGAGATCAGAGCTGGTGGATCATTCAAACTCACAAGAACCGGCGCTAAATTATGAGAGGAGCTTCTCATACAATGATGCTGAAACAAGTGATAGCATATCTAAGGCATTGGAGGAAGCATTTGAGAGCCCAAGTGAGCCGAACACCAATGAAAATGTAAATAAGTTGAAATCATCAGCCTCTAATGTTGAGAATACTTCCAAAGGAGCTCAGAAATCCGTTATTGGTGCTAGAGCAACTGATTCTGCTCGAGTTATGAAGTTCACAAAGGTCCTTTCTGGGACAACAGTCATATTAGAGAAGTTGCGTGAGTTGGCTTGGAGTGGCATACCACCATATATGCGACCTGATGTGTGGAGGCTTCTTTTGGGATATGCACCATCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCGGATACTGAGCGTTCAGATGATGAGATAAACATGCTTCGTCAGATTGCTGTTGATTGCCCAAGAACCGTGCCAGATGTGTCTTTTTTTCAGCAAGAACAAGTCCAGAAATCCTTGGAGCGCATCCTTTACACATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGAATAAATGATCTAGTTACTCCCTTTCTTGTGGTTTTCTTGTCAGAATACTTGGACGGTAGTGTGGATAGTTGGTCAATCTCCGATCTGTCTACCGATCAAATATGTATAGTAGAAGCTGATTGCTATTGGTGCCTATCAAAGCTACTTGATGGTATGCAAGACCATTACACATTTGCTCAGCCAGGGATCCAGAGGCTTGTGTTTAAGTTAAAGGAATTGGTCAGGCGGATTGATGAACCTGTATCTAGACATGTGGAGGAGCAAGGGCTGGAATTTCTTCAGTTTGCTTTCCGGTGGTTCAACTGTCTTTTAATACGTGAGATTCCCTTCCATCTTATTTCCCGTCTGTGGGATACATATCTTGCTGAAGGAGATGCATTGCCAGATTTCCTTGTGTATATTTTTGCCAGTTTTCTTTTAACGTGGTCAGAGGAGCTCAAGAAGCTTGATTTCCAAGAGTTGGTCATGTTTCTTCAACACCTACCAACTAATAACTGGACCGACCAGGAACTCGAGATGGTGCTTTCAAGAGCTTTCATGTGGCACAGTATGTTCAACAGCTCTCCCAGACATTTAGCCACGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

459

Amino Acids

52.86

Weight (kDa)

5.37

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	166 - 409	3.5e-48	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	302 - 425	4.5e-08	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30710
fragaria_vesca	FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760
malus_domestica	MD03G1229700.v1.1 MD04G1046900.v1.1 MD11G1250200.v1.1
prunus_persica	Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.4G179600_v2.0.a1 Prupe.4G179600_v2.0.a1
pyrus_communis	pycom03g17730 pycom04g04070
rosa_chinensis	RchiOBHm_Chr5g0033161
rosa_laevigata	RLG00000033452
rosa_multiflora	Rmu_sc0009377.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046810
rosa_rugosa	Rorug05G0137100
rosa_samantha	Rh5AG228900 Rh5BG230000 Rh5DG234700
rosa_wichuraiana	Rw5G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	921
AccB7I	CCANNNNNTGG	1 cut(s)	1252
AccI	GTMKAC	1 cut(s)	881
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	1 cut(s)	1018
AclWI	GGATC	3 cut(s)	183, 973, 986
AcsI	RAATTY	1 cut(s)	1064
AcuI	CTGAAG	2 cut(s)	1055, 1179
AfiI	CCNNNNNNNGG	4 cut(s)	776, 1140, 1141, 1252
AflIII	ACRYGT	1 cut(s)	1042
AgsI	TTSAA	8 cut(s)	88, 110, 183, 325, 1093, 1268, 1320, 1348
AjnI	CCWGG	2 cut(s)	973, 1296
Alw21I	GWGCWC	2 cut(s)	367, 1230
AlwI	GGATC	3 cut(s)	183, 973, 986
Ama87I	CYCGRG	2 cut(s)	405, 1304
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	1 cut(s)	756
ApoI	RAATTY	1 cut(s)	1064
Asp700I	GAANNNNTTC	1 cut(s)	1068
AspLEI	GCGC	3 cut(s)	202, 579, 741
AspS9I	GGNCC	3 cut(s)	427, 756, 1290
AsuC2I	CCSGG	1 cut(s)	138
AvaI	CYCGRG	2 cut(s)	405, 1304
AvaII	GGWCC	2 cut(s)	427, 1290
BamHI	GGATCC	1 cut(s)	978
BanI	GGYRCC	1 cut(s)	921
BanII	GRGCYC	3 cut(s)	287, 367, 1230
Bbv12I	GWGCWC	2 cut(s)	367, 1230
BccI	CCATC	4 cut(s)	544, 935, 1131, 1303
BciT130I	CCWGG	2 cut(s)	975, 1298
BciVI	GTATCC	2 cut(s)	616, 1138
BcnI	CCSGG	1 cut(s)	138
BfaI	CTAG	4 cut(s)	156, 387, 803, 1038
BfoI	RGCGCY	2 cut(s)	203, 580
BfuI	GTATCC	2 cut(s)	616, 1138
BlpI	GCTNAGC	1 cut(s)	969
Bme1390I	CCNGG	3 cut(s)	138, 975, 1298
Bme18I	GGWCC	2 cut(s)	427, 1290
BmeT110I	CYCGRG	2 cut(s)	405, 1304
BmgT120I	GGNCC	3 cut(s)	427, 756, 1290
BmiI	GGNNCC	2 cut(s)	923, 980
BmrFI	CCNGG	3 cut(s)	138, 975, 1298
BmsI	GCATC	4 cut(s)	67, 223, 750, 1156
BoxI	GACNNNNGTC	1 cut(s)	443
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bpu1102I	GCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	2 cut(s)	602, 1214
BpuMI	CCSGG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	1109
BsaBI	GATNNNNATC	1 cut(s)	1149
BsaJI	CCNNGG	4 cut(s)	137, 732, 974, 1371
BsaWI	WCCGGW	2 cut(s)	619, 1083
Bsc4I	CCNNNNNNNGG	4 cut(s)	776, 1140, 1141, 1252
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	1200, 1292
Bse3DI	GCAATG	1 cut(s)	1169
Bse8I	GATNNNNATC	1 cut(s)	1149
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	975, 1298
BseDI	CCNNGG	4 cut(s)	137, 732, 974, 1371
BseGI	GGATG	2 cut(s)	741, 766
BseJI	GATNNNNATC	1 cut(s)	1149
BseLI	CCNNNNNNNGG	4 cut(s)	776, 1140, 1141, 1252
BseMI	GCAATG	1 cut(s)	1169
BseMII	CTCAG	5 cut(s)	112, 380, 617, 618, 983
BseNI	ACTGG	2 cut(s)	1200, 1292
BseRI	GAGGAG	3 cut(s)	229, 1064, 1238
BshFI	GGCC	1 cut(s)	758
BshNI	GGYRCC	1 cut(s)	921
BsiHKAI	GWGCWC	2 cut(s)	367, 1230
BsiHKCI	CYCGRG	2 cut(s)	405, 1304
BsiSI	CCGG	4 cut(s)	137, 197, 620, 1084
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	4 cut(s)	776, 1140, 1141, 1252
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	758
BsoBI	CYCGRG	2 cut(s)	405, 1304
Bsp1286I	GDGCHC	3 cut(s)	287, 367, 1230
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	6 cut(s)	161, 175, 799, 874, 886, 978
Bsp1720I	GCTNAGC	1 cut(s)	969
BspACI	CCGC	1 cut(s)	1018
BspANI	GGCC	1 cut(s)	758
BspCNI	CTCAG	5 cut(s)	111, 379, 616, 619, 982
BspEI	TCCGGA	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	923, 980
BspPI	GGATC	3 cut(s)	183, 973, 986
BspQI	GCTCTTC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	921
BsrDI	GCAATG	1 cut(s)	1169
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	1200, 1292
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	4 cut(s)	137, 732, 974, 1371
BssMI	GATC	6 cut(s)	161, 175, 799, 874, 886, 978
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	2 cut(s)	975, 1298
Bst4CI	ACNGT	6 cut(s)	445, 596, 688, 848, 1097, 1340
Bst6I	CTCTTC	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	1109
BstDEI	CTNAG	7 cut(s)	98, 258, 366, 566, 603, 627, 969
BstDSI	CCRYGG	1 cut(s)	1371
BstF5I	GGATG	2 cut(s)	741, 766
BstH2I	RGCGCY	2 cut(s)	203, 580
BstHHI	GCGC	3 cut(s)	202, 579, 741
BstKTI	GATC	6 cut(s)	164, 178, 802, 877, 889, 981
BstMBI	GATC	6 cut(s)	161, 175, 799, 874, 886, 978
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 921, 1234
BstNI	CCWGG	2 cut(s)	975, 1298
BstNSI	RCATGY	2 cut(s)	655, 1046
BstPAI	GACNNNNGTC	1 cut(s)	443
BstSCI	CCNGG	3 cut(s)	136, 973, 1296
BstX2I	RGATCY	1 cut(s)	978
BstYI	RGATCY	1 cut(s)	978
BsuI	GTATCC	2 cut(s)	616, 1138
BsuRI	GGCC	1 cut(s)	758
BtgI	CCRYGG	1 cut(s)	1371
BtsCI	GGATG	2 cut(s)	741, 766
CfoI	GCGC	3 cut(s)	202, 579, 741
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	427, 756, 1290
CviAII	CATG	5 cut(s)	652, 753, 1043, 1258, 1330
DdeI	CTNAG	7 cut(s)	98, 258, 366, 566, 603, 627, 969
DpnI	GATC	6 cut(s)	163, 177, 801, 876, 888, 980
DpnII	GATC	6 cut(s)	161, 175, 799, 874, 886, 978
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	1033
Ecl136II	GAGCTC	2 cut(s)	365, 1228
Eco130I	CCWWGG	1 cut(s)	732
Eco24I	GRGCYC	3 cut(s)	287, 367, 1230
Eco47I	GGWCC	2 cut(s)	427, 1290
Eco53kI	GAGCTC	2 cut(s)	365, 1228
Eco57I	CTGAAG	2 cut(s)	1055, 1179
Eco88I	CYCGRG	2 cut(s)	405, 1304
EcoICRI	GAGCTC	2 cut(s)	365, 1228
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	973, 1296
EcoT14I	CCWWGG	1 cut(s)	732
EcoT22I	ATGCAT	1 cut(s)	1171
EcoT38I	GRGCYC	3 cut(s)	287, 367, 1230
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	5 cut(s)	655, 756, 1046, 1261, 1333
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	5 cut(s)	651, 752, 1042, 1257, 1329
FblI	GTMKAC	1 cut(s)	881
FokI	GGATG	2 cut(s)	728, 753
FriOI	GRGCYC	3 cut(s)	287, 367, 1230
FspBI	CTAG	4 cut(s)	156, 387, 803, 1038
GlaI	GCGC	3 cut(s)	201, 578, 740
HaeII	RGCGCY	2 cut(s)	203, 580
HaeIII	GGCC	1 cut(s)	758
HapII	CCGG	4 cut(s)	137, 197, 620, 1084
HhaI	GCGC	3 cut(s)	202, 579, 741
Hin1II	CATG	5 cut(s)	655, 756, 1046, 1261, 1333
Hin6I	GCGC	3 cut(s)	200, 577, 739
HinP1I	GCGC	3 cut(s)	200, 577, 739
HindIII	AAGCTT	1 cut(s)	1235
HinfI	GANTC	4 cut(s)	77, 84, 398, 1114
HpaII	CCGG	4 cut(s)	137, 197, 620, 1084
Hpy166II	GTNNAC	2 cut(s)	420, 882
Hpy188I	TCNGA	9 cut(s)	101, 166, 369, 547, 637, 663, 835, 874, 1222
Hpy188III	TCNNGA	9 cut(s)	81, 590, 620, 724, 982, 1038, 1231, 1306, 1320
Hpy8I	GTNNAC	2 cut(s)	420, 882
HpyAV	CCTTC	4 cut(s)	546, 564, 1129, 1154
HpyCH4III	ACNGT	6 cut(s)	445, 596, 688, 848, 1097, 1340
HpyCH4IV	ACGT	2 cut(s)	1108, 1214
HpyCH4V	TGCA	4 cut(s)	533, 773, 949, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 921, 1234
HpyF3I	CTNAG	7 cut(s)	98, 258, 366, 566, 603, 627, 969
HpySE526I	ACGT	2 cut(s)	1108, 1214
Hsp92II	CATG	5 cut(s)	655, 756, 1046, 1261, 1333
HspAI	GCGC	3 cut(s)	200, 577, 739
Kpn2I	TCCGGA	1 cut(s)	619
Kzo9I	GATC	6 cut(s)	161, 175, 799, 874, 886, 978
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	5 cut(s)	216, 362, 736, 1051, 1225
LweI	GCATC	4 cut(s)	67, 223, 750, 1156
MaeI	CTAG	4 cut(s)	156, 387, 803, 1038
MaeII	ACGT	2 cut(s)	1108, 1214
MaeIII	GTNAC	2 cut(s)	147, 805
MalI	GATC	6 cut(s)	163, 177, 801, 876, 888, 980
MboI	GATC	6 cut(s)	161, 175, 799, 874, 886, 978
MboII	GAAGA	4 cut(s)	16, 65, 1061, 1256
MflI	RGATCY	1 cut(s)	978
MhlI	GDGCHC	3 cut(s)	287, 367, 1230
MluCI	AATT	4 cut(s)	205, 541, 1007, 1064
MnlI	CCTC	9 cut(s)	107, 207, 262, 346, 507, 550, 978, 1042, 1216
Mph1103I	ATGCAT	1 cut(s)	1171
MroI	TCCGGA	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	1068
MseI	TTAA	4 cut(s)	996, 1001, 1103, 1211
MspI	CCGG	4 cut(s)	137, 197, 620, 1084
MspR9I	CCNGG	3 cut(s)	138, 975, 1298
MvaI	CCWGG	2 cut(s)	975, 1298
MwoI	GCNNNNNNNGC	3 cut(s)	39, 921, 1234
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	6 cut(s)	161, 175, 799, 874, 886, 978
NlaIII	CATG	5 cut(s)	655, 756, 1046, 1261, 1333
NlaIV	GGNNCC	2 cut(s)	923, 980
NsiI	ATGCAT	1 cut(s)	1171
NspI	RCATGY	2 cut(s)	655, 1046
PaeR7I	CTCGAG	2 cut(s)	405, 1304
PciI	ACATGT	1 cut(s)	1042
PciSI	GCTCTTC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	1068
PfeI	GAWTC	4 cut(s)	77, 84, 398, 1114
PflMI	CCANNNNNTGG	1 cut(s)	1252
Ppu21I	YACGTR	1 cut(s)	1109
PpuMI	RGGWCCY	1 cut(s)	427
PscI	ACATGT	1 cut(s)	1042
PshAI	GACNNNNGTC	1 cut(s)	443
Psp124BI	GAGCTC	2 cut(s)	367, 1230
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	973, 1296
PspGI	CCWGG	2 cut(s)	973, 1296
PspN4I	GGNNCC	2 cut(s)	923, 980
PspPI	GGNCC	3 cut(s)	427, 756, 1290
PspPPI	RGGWCCY	1 cut(s)	427
PspXI	VCTCGAGB	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	978
SacI	GAGCTC	2 cut(s)	367, 1230
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	996, 1001, 1103, 1211
Sau3AI	GATC	6 cut(s)	161, 175, 799, 874, 886, 978
Sau96I	GGNCC	3 cut(s)	427, 756, 1290
ScrFI	CCNGG	3 cut(s)	138, 975, 1298
SduI	GDGCHC	3 cut(s)	287, 367, 1230
SfaNI	GCATC	4 cut(s)	67, 223, 750, 1156
Sfr274I	CTCGAG	2 cut(s)	405, 1304
SinI	GGWCC	2 cut(s)	427, 1290
SlaI	CTCGAG	2 cut(s)	405, 1304
SmlI	CTYRAG	4 cut(s)	405, 581, 1229, 1304
SmoI	CTYRAG	4 cut(s)	405, 581, 1229, 1304
Sse9I	AATT	4 cut(s)	205, 541, 1007, 1064
SsiI	CCGC	1 cut(s)	1018
SspMI	CTAG	4 cut(s)	156, 387, 803, 1038
SstI	GAGCTC	2 cut(s)	367, 1230
StyD4I	CCNGG	3 cut(s)	136, 973, 1296
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	6 cut(s)	445, 596, 688, 848, 1097, 1340
TaiI	ACGT	2 cut(s)	1111, 1217
TaqI	TCGA	3 cut(s)	406, 763, 1305
TaqII	GACCGA	1 cut(s)	1307
TasI	AATT	4 cut(s)	205, 541, 1007, 1064
TfiI	GAWTC	4 cut(s)	77, 84, 398, 1114
Tru1I	TTAA	4 cut(s)	996, 1001, 1103, 1211
Tru9I	TTAA	4 cut(s)	996, 1001, 1103, 1211
TspDTI	ATGAA	5 cut(s)	17, 321, 428, 1041, 1318
TspGWI	ACGGA	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	1252
VpaK11BI	GGWCC	2 cut(s)	427, 1290
XapI	RAATTY	1 cut(s)	1064
XbaI	TCTAGA	1 cut(s)	1037
XceI	RCATGY	2 cut(s)	655, 1046
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1284
XhoI	CTCGAG	2 cut(s)	405, 1304
XmiI	GTMKAC	1 cut(s)	881
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	4 cut(s)	156, 387, 803, 1038
Zsp2I	ATGCAT	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.