AT2G30810

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017126
Physical Location & Seq
Reverse (-)
13127826 .. 13128666
841 bp
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UTR
Exon/CDS
Intron
AT2G30810.1

Sequence Viewer

Length: 321 bp
ATGATGAAGCTCATAGTTGTCTTTGTTATATCCAGTTTGTTGTTTGCTACTCAATTTTCTAATGGTGATGAATTAGAGAGTCAAGCTCAAGCACCTGCAATCCATAAGAATGGAGGAGAAGGCTCACTTAAACCAGAAGAATGTCCAAAGGCATGTGAATATCGATGTTCGGCGACATCTCACAGGAAACCATGTTTGTTTTTTTGCAACAAATGTTGTAACAAATGTTTGTGTGTACCATCGGGAACATATGGACACAAAGAAGAATGTCCTTGCTACAATAATTGGACGACCAAAGAAGGTGGACCAAAATGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

106

Amino Acids

11.67

Weight (kDa)

7.96

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 47 - 106 9.4e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30810
fragaria_vesca FvH4_4g16460
malus_domestica MD04G1009200.v1.1 MD04G1009300.v1.1 MD13G1285300.v1.1
prunus_persica Prupe.1G008600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0415191
rosa_roxburghii Rroxscaffold_5G00359010 Rroxscaffold_5G00359020
rosa_samantha Rh4BG191000 Rh4BG191200
rosa_wichuraiana Rw4G016400 Rw4G016410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 103
AasI GACNNNNNNGTC 1 cut(s) 312
Acc36I ACCTGC 1 cut(s) 103
AfaI GTAC 1 cut(s) 237
AluBI AGCT 2 cut(s) 10, 86
AluI AGCT 2 cut(s) 10, 86
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 305
BccI CCATC 1 cut(s) 247
BfuAI ACCTGC 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BpuEI CTTGAG 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 163
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 163
BspDI ATCGAT 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 110
Bsu15I ATCGAT 1 cut(s) 163
BsuTUI ATCGAT 1 cut(s) 163
BveI ACCTGC 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 305
ClaI ATCGAT 1 cut(s) 163
Csp6I GTAC 1 cut(s) 236
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 3 cut(s) 153, 192, 318
CviJI RGCY 3 cut(s) 10, 86, 123
CviKI_1 RGCY 3 cut(s) 10, 86, 123
CviQI GTAC 1 cut(s) 236
DrdI GACNNNNNNGTC 1 cut(s) 312
DseDI GACNNNNNNGTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 305
FaeI CATG 3 cut(s) 156, 195, 321
FaiI YATR 8 cut(s) 14, 29, 105, 154, 193, 250, 252, 319
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 3 cut(s) 152, 191, 317
FauNDI CATATG 1 cut(s) 250
Hin1II CATG 3 cut(s) 156, 195, 321
HinfI GANTC 1 cut(s) 79
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 236, 305
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 2 cut(s) 236, 305
HpyAV CCTTC 2 cut(s) 113, 293
HpyCH4V TGCA 2 cut(s) 98, 207
Hsp92II CATG 3 cut(s) 156, 195, 321
LpnPI CCDG 4 cut(s) 46, 108, 147, 169
MaeIII GTNAC 1 cut(s) 218
MboII GAAGA 2 cut(s) 149, 275
MluCI AATT 3 cut(s) 53, 71, 283
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 1 cut(s) 107
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 108
NdeI CATATG 1 cut(s) 250
NlaIII CATG 3 cut(s) 156, 195, 321
NspI RCATGY 1 cut(s) 156
PaqCI CACCTGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 305
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 1 cut(s) 88
SetI ASST 4 cut(s) 12, 88, 97, 304
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 3 cut(s) 53, 71, 283
TaqI TCGA 1 cut(s) 163
TasI AATT 3 cut(s) 53, 71, 283
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TspDTI ATGAA 2 cut(s) 20, 84
VpaK11BI GGWCC 1 cut(s) 305
XceI RCATGY 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.