Rh4BG191000

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017126
Physical Location & Seq
Forward (+)
33075178 .. 33091666
16489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG191000.1

Sequence Viewer

Length: 258 bp
ATGGTTCGCTCGCGAATGGCAGAGGAGAAGCATATCTTCCCCCAGACTGGTGGTAAAAAGTCCCTCAGACCTGAAGAATGTCCAGCGGCATGCGCATATCGGTGTTCAGCAACTAAACACAAGAAGCCATGTCTGCTCTACTGCAATGAGTGTTGTATACAATGTCTATGTGTTCCATCAGGTACATATGGACACAAGGAAGAATGTCCATGCTATAACAACTGGAAGACACATCGTGGCACTCCCAAGTGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

85

Amino Acids

9.64

Weight (kDa)

8.87

Isoelectric Point (pI)

78.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 26 - 85 5.4e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30810
fragaria_vesca FvH4_4g16460
malus_domestica MD04G1009200.v1.1 MD04G1009300.v1.1 MD13G1285300.v1.1
prunus_persica Prupe.1G008600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0415191
rosa_roxburghii Rroxscaffold_5G00359010 Rroxscaffold_5G00359020
rosa_samantha Rh4BG191000 Rh4BG191200
rosa_wichuraiana Rw4G016400 Rw4G016410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 94
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 13
AciI CCGC 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 93
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 47
AspLEI GCGC 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 233
BccI CCATC 1 cut(s) 184
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 52, 227
Bse3DI GCAATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 79
BseNI ACTGG 2 cut(s) 52, 227
BseRI GAGGAG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 46
Bsp68I TCGCGA 1 cut(s) 13
BspACI CCGC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 2 cut(s) 52, 227
BssNAI GTATAC 1 cut(s) 158
Bst1107I GTATAC 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 11, 91
BstDEI CTNAG 1 cut(s) 65
BstFNI CGCG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 95
BstMWI GCNNNNNNNGC 2 cut(s) 92, 133
BstNSI RCATGY 1 cut(s) 93
BstUI CGCG 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 233
BstXI CCANNNNNNTGG 1 cut(s) 50
BstZ17I GTATAC 1 cut(s) 158
BtuMI TCGCGA 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 11, 91
CfoI GCGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 183
CviAII CATG 4 cut(s) 90, 129, 210, 255
CviJI RGCY 1 cut(s) 127
CviKI_1 RGCY 1 cut(s) 127
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 65
DraIII CACNNNGTG 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 93
FaeI CATG 4 cut(s) 93, 132, 213, 258
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 46
FatI CATG 4 cut(s) 89, 128, 209, 254
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspAI RTGCGCAY 1 cut(s) 94
FspI TGCGCA 1 cut(s) 94
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 95
Hin1II CATG 4 cut(s) 93, 132, 213, 258
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 133
HpyF3I CTNAG 1 cut(s) 65
Hsp92II CATG 4 cut(s) 93, 132, 213, 258
HspAI GCGC 1 cut(s) 93
LpnPI CCDG 6 cut(s) 33, 56, 84, 96, 165, 208
MboII GAAGA 4 cut(s) 28, 86, 212, 238
MnlI CCTC 2 cut(s) 16, 74
MslI CAYNNNNRTG 1 cut(s) 100
MspA1I CMGCKG 1 cut(s) 86
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 92, 133
NdeI CATATG 1 cut(s) 187
NlaIII CATG 4 cut(s) 93, 132, 213, 258
NruI TCGCGA 1 cut(s) 13
NsbI TGCGCA 1 cut(s) 94
NspI RCATGY 1 cut(s) 93
PaeI GCATGC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 88
RruI TCGCGA 1 cut(s) 13
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 100
SatI GCNGC 1 cut(s) 87
SetI ASST 2 cut(s) 73, 184
SmiMI CAYNNNNRTG 1 cut(s) 100
SphI GCATGC 1 cut(s) 93
SsiI CCGC 1 cut(s) 86
TauI GCSGC 1 cut(s) 89
XceI RCATGY 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.