Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017126

Physical Location & Seq

Genomic Coordinates Reverse (-)

707155 .. 707790

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G008600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCCAGACTCTCATGGGTTCCAACTGCTCTTTTCGTCATCCTAGCCTTGAGCTTTGCCATTGATGTTGCTCTGGCTCAAGAGGATCAGAATGCCGGTGTAATCAATCACCCTGCTGAGAAAGAGGGATCACTTCGTCGTGAAGATTGTCCATCAGCATGCAAGTATCGGTGTTCAGAAACTTCACATAAGAAGCCATGCATGTTCTTCTGCAAGAAATGCTGCGACAAATGTCTTTGTGTACCATCGGGCACATATGGGCACAAGGAAGAATGCCCATGCTACAACAACTGGAAGACCAAAGAAGATGGTCCTAAGTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

109

Amino Acids

12.08

Weight (kDa)

7.96

Isoelectric Point (pI)

56.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30810
fragaria_vesca	FvH4_4g16460
malus_domestica	MD04G1009200.v1.1 MD04G1009300.v1.1 MD13G1285300.v1.1
prunus_persica	Prupe.1G008600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415191
rosa_roxburghii	Rroxscaffold_5G00359010 Rroxscaffold_5G00359020
rosa_samantha	Rh4BG191000 Rh4BG191200
rosa_wichuraiana	Rw4G016400 Rw4G016410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	93, 136
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	243
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
AlwI	GGATC	2 cut(s)	93, 136
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	311
BaeGI	GKGCMC	3 cut(s)	254, 264, 323
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	3 cut(s)	160, 253, 302
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	21
BoxI	GACNNNNGTC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	63, 70
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	296
BseSI	GKGCMC	3 cut(s)	254, 264, 323
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	96
BsmI	GAATGC	2 cut(s)	97, 278
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	3 cut(s)	254, 264, 323
Bsp143I	GATC	2 cut(s)	85, 128
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	93, 136
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	2 cut(s)	85, 128
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	117, 315
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	88, 131
BstMBI	GATC	2 cut(s)	85, 128
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNSI	RCATGY	2 cut(s)	162, 205
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSLI	GKGCMC	3 cut(s)	254, 264, 323
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	6 cut(s)	15, 159, 198, 202, 279, 324
CviJI	RGCY	5 cut(s)	5, 47, 54, 77, 196
CviKI_1	RGCY	5 cut(s)	5, 47, 54, 77, 196
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	2 cut(s)	117, 315
DpnI	GATC	2 cut(s)	87, 130
DpnII	GATC	2 cut(s)	85, 128
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	203
FaeI	CATG	6 cut(s)	18, 162, 201, 205, 282, 327
FaiI	YATR	9 cut(s)	16, 160, 189, 199, 203, 256, 258, 280, 325
FatI	CATG	6 cut(s)	14, 158, 197, 201, 278, 323
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	223
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	6 cut(s)	18, 162, 201, 205, 282, 327
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	90, 178
Hpy188III	TCNNGA	2 cut(s)	80, 140
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	162, 201, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	2 cut(s)	117, 315
Hsp92II	CATG	6 cut(s)	18, 162, 201, 205, 282, 327
Kzo9I	GATC	2 cut(s)	85, 128
LpnPI	CCDG	5 cut(s)	19, 59, 109, 126, 277
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	44
MalI	GATC	2 cut(s)	87, 130
MboI	GATC	2 cut(s)	85, 128
MboII	GAAGA	5 cut(s)	155, 199, 281, 307, 317
MhlI	GDGCHC	3 cut(s)	254, 264, 323
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	3
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	76, 118
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	157
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	96
Mva1269I	GAATGC	2 cut(s)	97, 278
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	85, 128
NlaIII	CATG	6 cut(s)	18, 162, 201, 205, 282, 327
NlaIV	GGNNCC	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	203
NspI	RCATGY	2 cut(s)	162, 205
PaeI	GCATGC	1 cut(s)	162
PctI	GAATGC	2 cut(s)	97, 278
PkrI	GCNGC	1 cut(s)	224
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
PshAI	GACNNNNGTC	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	311
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	157
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	2 cut(s)	85, 128
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	3
SduI	GDGCHC	3 cut(s)	254, 264, 323
SetI	ASST	1 cut(s)	56
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	49, 78
SmoI	CTYRAG	2 cut(s)	49, 78
SphI	GCATGC	1 cut(s)	162
SspMI	CTAG	1 cut(s)	44
TseI	GCWGC	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	311
XceI	RCATGY	2 cut(s)	162, 205
XspI	CTAG	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.