Rroxscaffold_5G00359010

Gibberellin-regulated protein 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017126
Physical Location & Seq
Forward (+)
39065561 .. 39066806
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359010.1

Sequence Viewer

Length: 315 bp
ATGGCAAGGTTCTCATGGATTCGTGCTGCTTTCATTGTCATCCTAATCCTCAACTTTGCCATGAATGTTATGGTAATGTATAAAGATGATCAAAATGCTGATACTGCTGGTGAAAAGTCCCTCAGACCTGAAGAATGTCCAGCGGCATGCGCATATCGGTGTTCAGCAACTAAACACAAGAAGCCATGCGTGGTCTACTGCAATGAGTGTTGTATACAATGTCTATGTGTTCCATCAGGTACATATGGACACAAGAAAGAATGTCCATGCTATAACAACTGGAAGACACATCGTGGCACTCCCAAGTGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

104

Amino Acids

11.77

Weight (kDa)

8.74

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 45 - 104 4.5e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30810
fragaria_vesca FvH4_4g16460
malus_domestica MD04G1009200.v1.1 MD04G1009300.v1.1 MD13G1285300.v1.1
prunus_persica Prupe.1G008600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0415191
rosa_roxburghii Rroxscaffold_5G00359010 Rroxscaffold_5G00359020
rosa_samantha Rh4BG191000 Rh4BG191200
rosa_wichuraiana Rw4G016400 Rw4G016410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 151
AccI GTMKAC 2 cut(s) 195, 214
AciI CCGC 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 241
BclI TGATCA 1 cut(s) 88
BisI GCNGC 2 cut(s) 27, 144
BlsI GCNGC 2 cut(s) 28, 145
BpiI GAAGAC 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 208
BseGI GGATG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 13
BslFI GGGAC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 284
BssMI GATC 1 cut(s) 88
BssNAI GTATAC 1 cut(s) 215
Bst1107I GTATAC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 104, 149
BstNSI RCATGY 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 290
BstZ17I GTATAC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 240
CviAII CATG 6 cut(s) 15, 61, 147, 186, 267, 312
CviJI RGCY 1 cut(s) 184
CviKI_1 RGCY 1 cut(s) 184
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraIII CACNNNGTG 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 150
FaeI CATG 6 cut(s) 18, 64, 150, 189, 270, 315
FaqI GGGAC 1 cut(s) 103
FatI CATG 6 cut(s) 14, 60, 146, 185, 266, 311
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 88
FblI GTMKAC 2 cut(s) 195, 214
Fnu4HI GCNGC 2 cut(s) 27, 144
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 27, 144
FspAI RTGCGCAY 1 cut(s) 151
FspI TGCGCA 1 cut(s) 151
GlaI GCGC 1 cut(s) 151
GluI GCNGC 2 cut(s) 27, 144
HhaI GCGC 1 cut(s) 152
Hin1II CATG 6 cut(s) 18, 64, 150, 189, 270, 315
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 1 cut(s) 19
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 196, 215
Hpy188I TCNGA 1 cut(s) 125
Hpy8I GTNNAC 2 cut(s) 196, 215
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 149
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 6 cut(s) 18, 64, 150, 189, 270, 315
HspAI GCGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 93, 141, 153, 222, 265
Lsp1109I GCAGC 1 cut(s) 13
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 143, 295
MnlI CCTC 2 cut(s) 59, 131
MslI CAYNNNNRTG 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 104, 149
NdeI CATATG 1 cut(s) 244
NdeII GATC 1 cut(s) 88
NlaIII CATG 6 cut(s) 18, 64, 150, 189, 270, 315
NsbI TGCGCA 1 cut(s) 151
NspI RCATGY 1 cut(s) 150
PaeI GCATGC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 28, 145
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 157
SatI GCNGC 2 cut(s) 27, 144
Sau3AI GATC 1 cut(s) 88
SetI ASST 3 cut(s) 11, 130, 241
SmiMI CAYNNNNRTG 1 cut(s) 157
SphI GCATGC 1 cut(s) 150
SsiI CCGC 1 cut(s) 143
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 19
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 22, 77
XceI RCATGY 1 cut(s) 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XmiI GTMKAC 2 cut(s) 195, 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.