MD13G1285300.v1.1

Gibberellin-regulated protein 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017126
Physical Location & Seq
Reverse (-)
44016921 .. 44017854
934 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1285300.v1.1.491

Sequence Viewer

Length: 333 bp
ATGGGCAGACTCTCATGGATTCCAACTGTTCTTTTTGTCATCCTAGCCTTGATCTTTGCCATTGATATTGCTTTGGTACTTGCTCAAAAGGATCAGAATGCTGGTGCAATCGACCACCCTAAGGGAGAACAGGGATCACTCCGTAGTGAAGATTGTCCAGAGGCATGCAAGTATCGATGTTCAACAACTTCACATAAGAAGCCATGCATGTTCTTTTGCAAGAAATGTTGCGCCAAGTGTCTTTGTGTTCCATCGGGCACATATGGACACAAGGAAGAATGTCCCTGCTACAACAACTGGAAGACGAAAGAAGGCGGTCCCAAGTGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

111

Amino Acids

12.16

Weight (kDa)

8.61

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 51 - 110 5.7e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30810
fragaria_vesca FvH4_4g16460
malus_domestica MD04G1009200.v1.1 MD04G1009300.v1.1 MD13G1285300.v1.1
prunus_persica Prupe.1G008600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0415191
rosa_roxburghii Rroxscaffold_5G00359010 Rroxscaffold_5G00359020
rosa_samantha Rh4BG191000 Rh4BG191200
rosa_wichuraiana Rw4G016400 Rw4G016410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 315
AclWI GGATC 2 cut(s) 99, 142
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 1 cut(s) 183
AlwI GGATC 2 cut(s) 99, 142
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 317
AvaII GGWCC 1 cut(s) 317
AxyI CCTNAGG 1 cut(s) 120
BaeGI GKGCMC 2 cut(s) 260, 329
BbsI GAAGAC 1 cut(s) 308
BccI CCATC 1 cut(s) 259
BfaI CTAG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 302
Bse21I CCTNAGG 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 175
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 302
BseSI GKGCMC 2 cut(s) 260, 329
BshVI ATCGAT 1 cut(s) 175
BslFI GGGAC 2 cut(s) 267, 303
BslI CCNNNNNNNGG 1 cut(s) 121
BsmFI GGGAC 2 cut(s) 267, 303
BsmI GAATGC 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 260, 329
Bsp143I GATC 3 cut(s) 51, 91, 134
BspACI CCGC 1 cut(s) 315
BspDI ATCGAT 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 319
BspPI GGATC 2 cut(s) 99, 142
BsrI ACTGG 1 cut(s) 302
BssMI GATC 3 cut(s) 51, 91, 134
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 3 cut(s) 54, 94, 137
BstMBI GATC 3 cut(s) 51, 91, 134
BstNSI RCATGY 2 cut(s) 168, 211
BstSLI GKGCMC 2 cut(s) 260, 329
BstV2I GAAGAC 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 175
Bsu36I CCTNAGG 1 cut(s) 120
BsuTUI ATCGAT 1 cut(s) 175
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 317
ClaI ATCGAT 1 cut(s) 175
Csp6I GTAC 1 cut(s) 77
CviAII CATG 4 cut(s) 15, 165, 204, 208
CviJI RGCY 2 cut(s) 47, 202
CviKI_1 RGCY 2 cut(s) 47, 202
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 120
DpnI GATC 3 cut(s) 53, 93, 136
DpnII GATC 3 cut(s) 51, 91, 134
Eco47I GGWCC 1 cut(s) 317
Eco81I CCTNAGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 209
FaeI CATG 4 cut(s) 18, 168, 207, 211
FaiI YATR 8 cut(s) 16, 166, 195, 205, 209, 262, 264, 331
FaqI GGGAC 2 cut(s) 267, 303
FatI CATG 4 cut(s) 14, 164, 203, 207
FauNDI CATATG 1 cut(s) 262
FokI GGATG 1 cut(s) 26
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 233
Hin1II CATG 4 cut(s) 18, 168, 207, 211
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 2 cut(s) 9, 19
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 4 cut(s) 107, 168, 207, 219
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 4 cut(s) 18, 168, 207, 211
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 3 cut(s) 51, 91, 134
LpnPI CCDG 5 cut(s) 87, 116, 171, 283, 298
MaeI CTAG 1 cut(s) 44
MalI GATC 3 cut(s) 53, 93, 136
MboI GATC 3 cut(s) 51, 91, 134
MboII GAAGA 3 cut(s) 161, 287, 313
MhlI GDGCHC 2 cut(s) 260, 329
MlyI GAGTC 1 cut(s) 3
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 1 cut(s) 154
Mph1103I ATGCAT 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 103
NdeI CATATG 1 cut(s) 262
NdeII GATC 3 cut(s) 51, 91, 134
NlaIII CATG 4 cut(s) 18, 168, 207, 211
NlaIV GGNNCC 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 2 cut(s) 168, 211
PaeI GCATGC 1 cut(s) 168
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 19
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 317
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
Sau3AI GATC 3 cut(s) 51, 91, 134
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 3
SduI GDGCHC 2 cut(s) 260, 329
SinI GGWCC 1 cut(s) 317
SphI GCATGC 1 cut(s) 168
SsiI CCGC 1 cut(s) 315
SspMI CTAG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 111, 175
TfiI GAWTC 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 317
XceI RCATGY 2 cut(s) 168, 211
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.