FvH4_4g16460

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017126
Physical Location & Seq
Reverse (-)
20401468 .. 20402784
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16460.t1

Sequence Viewer

Length: 330 bp
ATGGCTAGCCTCTCATGGATTTCCATTGCTTTCCTTGTCATCTTTGCCTTCGCAACCAATATTTTGGCTCAATGGGATCAGAGTGCGGCAGCTGCACCTGCTGCAACCATTTTTCCTCAAGGCGGAGAAGGATCACTTAAACCTGAACAATGTGCAGGAGCGTGTGATTATCGGTGCTCAGCAACTTCACACAAGAAGCCATGTTTGTTCTTCTGCAATATGTGTTGTCAAAAATGTTTGTGTGTCCCATCGGGCACATATGGACACAAAGAAGAATGTCCATGCTACAATGACTGGAAAACCCAACAAGGAACTCCCAAATGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

110

Amino Acids

11.8

Weight (kDa)

7.43

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 50 - 109 2.4e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30810
fragaria_vesca FvH4_4g16460
malus_domestica MD04G1009200.v1.1 MD04G1009300.v1.1 MD13G1285300.v1.1
prunus_persica Prupe.1G008600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0415191
rosa_roxburghii Rroxscaffold_5G00359010 Rroxscaffold_5G00359020
rosa_samantha Rh4BG191000 Rh4BG191200
rosa_wichuraiana Rw4G016400 Rw4G016410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 2 cut(s) 86, 123
AclWI GGATC 2 cut(s) 84, 139
AfiI CCNNNNNNNGG 1 cut(s) 122
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 2 cut(s) 84, 139
ApeKI GCWGC 3 cut(s) 89, 92, 101
AsuNHI GCTAGC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 79, 88, 101
BccI CCATC 1 cut(s) 256
BfaI CTAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 4 cut(s) 87, 90, 93, 102
BlpI GCTNAGC 1 cut(s) 178
BlsI GCNGC 4 cut(s) 88, 91, 94, 103
BmtI GCTAGC 1 cut(s) 9
Bpu1102I GCTNAGC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 3 cut(s) 79, 88, 101
BsgI GTGCAG 2 cut(s) 78, 174
BsiHKAI GWGCWC 1 cut(s) 179
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 179, 257
Bsp143I GATC 2 cut(s) 76, 131
Bsp1720I GCTNAGC 1 cut(s) 178
BspACI CCGC 2 cut(s) 86, 123
BspCNI CTCAG 1 cut(s) 191
BspMI ACCTGC 1 cut(s) 106
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 2 cut(s) 84, 139
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 299
BssMI GATC 2 cut(s) 76, 131
BstAPI GCANNNNNTGC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 178
BstKTI GATC 2 cut(s) 79, 134
BstMBI GATC 2 cut(s) 76, 131
BstMWI GCNNNNNNNGC 3 cut(s) 92, 98, 101
BstSLI GKGCMC 1 cut(s) 257
BstV1I GCAGC 3 cut(s) 79, 88, 101
BstXI CCANNNNNNTGG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 7
CviAII CATG 3 cut(s) 15, 201, 282
CviJI RGCY 5 cut(s) 5, 9, 68, 92, 199
CviKI_1 RGCY 5 cut(s) 5, 9, 68, 92, 199
DdeI CTNAG 1 cut(s) 178
DpnI GATC 2 cut(s) 78, 133
DpnII GATC 2 cut(s) 76, 131
EciI GGCGGA 1 cut(s) 138
FaeI CATG 3 cut(s) 18, 204, 285
FaiI YATR 6 cut(s) 16, 202, 221, 259, 261, 283
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 1 cut(s) 230
FatI CATG 3 cut(s) 14, 200, 281
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 87, 90, 93, 102
Fsp4HI GCNGC 4 cut(s) 87, 90, 93, 102
FspBI CTAG 1 cut(s) 6
GluI GCNGC 4 cut(s) 87, 90, 93, 102
Hin1II CATG 3 cut(s) 18, 204, 285
Hpy188I TCNGA 1 cut(s) 81
HpyAV CCTTC 2 cut(s) 58, 122
HpyCH4V TGCA 4 cut(s) 95, 104, 155, 216
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 98, 101
HpyF3I CTNAG 1 cut(s) 178
Hsp92II CATG 3 cut(s) 18, 204, 285
Kzo9I GATC 2 cut(s) 76, 131
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 4 cut(s) 111, 141, 156, 280
Lsp1109I GCAGC 3 cut(s) 79, 88, 101
MaeI CTAG 1 cut(s) 6
MalI GATC 2 cut(s) 78, 133
MboI GATC 2 cut(s) 76, 131
MboII GAAGA 2 cut(s) 202, 284
MhlI GDGCHC 2 cut(s) 179, 257
MnlI CCTC 2 cut(s) 20, 126
MseI TTAA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 92, 98, 101
NdeI CATATG 1 cut(s) 259
NdeII GATC 2 cut(s) 76, 131
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 3 cut(s) 18, 204, 285
PaqCI CACCTGC 1 cut(s) 106
PkrI GCNGC 4 cut(s) 88, 91, 94, 103
PvuII CAGCTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 4 cut(s) 87, 90, 93, 102
Sau3AI GATC 2 cut(s) 76, 131
SduI GDGCHC 2 cut(s) 179, 257
SetI ASST 3 cut(s) 94, 100, 145
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
SsiI CCGC 2 cut(s) 86, 123
SspI AATATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 6
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 3 cut(s) 89, 92, 101
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.