RchiOBHm_Chr4g0415191

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017126
Physical Location & Seq
Forward (+)
39804472 .. 39805361
890 bp
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UTR
Exon/CDS
Intron
PRQ38549

Sequence Viewer

Length: 333 bp
ATGGCTAGGCTCTCATGGATTTCCATTGCTTTCTTTGTCATCCTTGCCTTCGCAATCAATACTTTGGTAGCTCAATGGGATATCGATCAAAGTCCTGCTCCTGCTGTTCAAATTGTTCCTCAAGGCGGAGAAGGATCGCTTAAAGCTGAAGAATGCGCGGGAGCGTGTGATTTTCGGTGTTCAGCAACTTCACACAAGAAGCCATGTCTGTTCTTTTGCAATATGTGTTGTCAAAAATGTCTCTGTGTCCCATCGGGCACATATGGACACAAAGAAGAATGTCCATGCTACAACAACTGGAAAACCCAGGAAGGAGGTCCCAAATGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

110

Amino Acids

12.0

Weight (kDa)

6.67

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 51 - 110 2.6e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30810
fragaria_vesca FvH4_4g16460
malus_domestica MD04G1009200.v1.1 MD04G1009300.v1.1 MD13G1285300.v1.1
prunus_persica Prupe.1G008600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0415191
rosa_roxburghii Rroxscaffold_5G00359010 Rroxscaffold_5G00359020
rosa_samantha Rh4BG191000 Rh4BG191200
rosa_wichuraiana Rw4G016400 Rw4G016410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 158
AciI CCGC 2 cut(s) 126, 158
AclWI GGATC 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 2 cut(s) 71, 146
AluI AGCT 2 cut(s) 71, 146
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 142
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 317
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 260
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 105
Bsa29I ATCGAT 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 1 cut(s) 308
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 84
BslFI GGGAC 2 cut(s) 233, 303
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 2 cut(s) 233, 303
BsmI GAATGC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 85, 134
BspACI CCGC 2 cut(s) 126, 158
BspDI ATCGAT 1 cut(s) 84
BspFNI CGCG 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 319
BspPI GGATC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 2 cut(s) 85, 134
Bst2UI CCWGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 158
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 88, 137
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 2 cut(s) 85, 134
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 158
Bsu15I ATCGAT 1 cut(s) 84
BsuTUI ATCGAT 1 cut(s) 84
BtsCI GGATG 1 cut(s) 39
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 317
ClaI ATCGAT 1 cut(s) 84
CviAII CATG 3 cut(s) 15, 204, 285
CviJI RGCY 5 cut(s) 5, 10, 71, 146, 202
CviKI_1 RGCY 5 cut(s) 5, 10, 71, 146, 202
DpnI GATC 2 cut(s) 87, 136
DpnII GATC 2 cut(s) 85, 134
EciI GGCGGA 1 cut(s) 141
Eco32I GATATC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 306
EcoRV GATATC 1 cut(s) 82
FaeI CATG 3 cut(s) 18, 207, 288
FaiI YATR 6 cut(s) 16, 205, 224, 262, 264, 286
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 2 cut(s) 233, 303
FatI CATG 3 cut(s) 14, 203, 284
FauI CCCGC 1 cut(s) 151
FauNDI CATATG 1 cut(s) 262
FokI GGATG 1 cut(s) 26
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 18, 207, 288
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HpyAV CCTTC 3 cut(s) 58, 125, 305
HpyCH4V TGCA 1 cut(s) 219
Hsp92II CATG 3 cut(s) 18, 207, 288
HspAI GCGC 1 cut(s) 156
Kzo9I GATC 2 cut(s) 85, 134
LmnI GCTCC 2 cut(s) 103, 161
LpnPI CCDG 5 cut(s) 108, 114, 283, 293, 320
MaeI CTAG 1 cut(s) 6
MalI GATC 2 cut(s) 87, 136
MboI GATC 2 cut(s) 85, 134
MboII GAAGA 2 cut(s) 161, 287
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 1 cut(s) 111
MnlI CCTC 2 cut(s) 129, 308
MseI TTAA 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 1 cut(s) 158
NdeI CATATG 1 cut(s) 262
NdeII GATC 2 cut(s) 85, 134
NlaIII CATG 3 cut(s) 18, 207, 288
NlaIV GGNNCC 1 cut(s) 319
PctI GAATGC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 317
PspPPI RGGWCCY 1 cut(s) 317
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 2 cut(s) 85, 134
Sau96I GGNCC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 1 cut(s) 260
SetI ASST 3 cut(s) 73, 148, 319
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 1 cut(s) 111
SsiI CCGC 2 cut(s) 126, 158
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 306
TaqI TCGA 1 cut(s) 84
TasI AATT 1 cut(s) 111
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 317
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.