MD04G1009300.v1.1

Gibberellin-regulated protein 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0017126
Physical Location & Seq
Reverse (-)
1076811 .. 1078092
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1009300.v1.1.491

Sequence Viewer

Length: 354 bp
ATGGCCAGACTCTCGTGGATTCCAACTGCTCTTTTTGTCATCCTAGCCTTGATGACCTTTGCCATTGATATTGCTTTGGTACTTGCTCAAGAGGATCAGAATGCTGGTGCAACCGTCCCTCTAACTACTGGAGGACACGGATCACCTCCTAGAAAAGAGATAGATTGCCCAAAGGCATGCAAGCATCGATGTTCAGCAACTTCACATAAGAAGCCATGCATGTTCTTTTGCGAGAAATGGTGCGCTAAGTGTCTTTGTGTTCCATCGGGCACACATGGACACAAGGAAAACTGTCCCTGCTACAACTACTGGAAGGCGAAAGAAGCCGGTCGTCCCAAGTGCAAGTGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

118

Amino Acids

12.87

Weight (kDa)

8.97

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 55 - 114 2.7e-18 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30810
fragaria_vesca FvH4_4g16460
malus_domestica MD04G1009200.v1.1 MD04G1009300.v1.1 MD13G1285300.v1.1
prunus_persica Prupe.1G008600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0415191
rosa_roxburghii Rroxscaffold_5G00359010 Rroxscaffold_5G00359020
rosa_samantha Rh4BG191000 Rh4BG191200
rosa_wichuraiana Rw4G016400 Rw4G016410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 102, 148
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 81
AlwI GGATC 2 cut(s) 102, 148
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 135
BaeGI GKGCMC 2 cut(s) 272, 350
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 13
BccI CCATC 1 cut(s) 271
BfaI CTAG 2 cut(s) 44, 150
BmsI GCATC 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 133, 314
BseCI ATCGAT 1 cut(s) 187
BseGI GGATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 133, 314
BseSI GKGCMC 2 cut(s) 272, 350
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 331
BsiSI CCGG 1 cut(s) 327
BslFI GGGAC 3 cut(s) 101, 279, 318
BsmFI GGGAC 3 cut(s) 101, 279, 318
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 272, 350
Bsp143I GATC 2 cut(s) 94, 140
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 187
BspPI GGATC 2 cut(s) 102, 148
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 2 cut(s) 133, 314
BssAI RCCGGY 1 cut(s) 326
BssMI GATC 2 cut(s) 94, 140
BssSI CACGAG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 115, 293
BstC8I GCNNGC 2 cut(s) 178, 182
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 97, 143
BstMBI GATC 2 cut(s) 94, 140
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 2 cut(s) 180, 223
BstSLI GKGCMC 2 cut(s) 272, 350
Bsu15I ATCGAT 1 cut(s) 187
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 187
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 178, 182
CfoI GCGC 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 187
Csp6I GTAC 1 cut(s) 80
CviAII CATG 5 cut(s) 177, 216, 220, 275, 351
CviJI RGCY 4 cut(s) 5, 47, 214, 326
CviKI_1 RGCY 4 cut(s) 5, 47, 214, 326
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 96, 142
DpnII GATC 2 cut(s) 94, 140
EaeI YGGCCR 1 cut(s) 3
EcoT22I ATGCAT 1 cut(s) 221
FaeI CATG 5 cut(s) 180, 219, 223, 278, 354
FaiI YATR 6 cut(s) 178, 207, 217, 221, 276, 352
FaqI GGGAC 3 cut(s) 101, 279, 318
FatI CATG 5 cut(s) 176, 215, 219, 274, 350
FokI GGATG 1 cut(s) 26
FspBI CTAG 2 cut(s) 44, 150
GlaI GCGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 327
HhaI GCGC 1 cut(s) 245
Hin1II CATG 5 cut(s) 180, 219, 223, 278, 354
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 2 cut(s) 9, 19
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 115, 293
HpyCH4V TGCA 4 cut(s) 110, 180, 219, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 5 cut(s) 180, 219, 223, 278, 354
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 2 cut(s) 94, 140
LpnPI CCDG 6 cut(s) 19, 90, 114, 295, 310, 340
LweI GCATC 1 cut(s) 193
MaeI CTAG 2 cut(s) 44, 150
MalI GATC 2 cut(s) 96, 142
MboI GATC 2 cut(s) 94, 140
MhlI GDGCHC 2 cut(s) 272, 350
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 3
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 4 cut(s) 85, 125, 129, 156
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 221
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 2 cut(s) 94, 140
NlaIII CATG 5 cut(s) 180, 219, 223, 278, 354
NsiI ATGCAT 1 cut(s) 221
NspI RCATGY 2 cut(s) 180, 223
PaeI GCATGC 1 cut(s) 180
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 19
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 94, 140
SchI GAGTC 1 cut(s) 3
SduI GDGCHC 2 cut(s) 272, 350
SetI ASST 2 cut(s) 59, 148
SfaNI GCATC 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SphI GCATGC 1 cut(s) 180
SspMI CTAG 2 cut(s) 44, 150
TaaI ACNGT 2 cut(s) 115, 293
TaqI TCGA 1 cut(s) 187
TfiI GAWTC 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 153
XceI RCATGY 2 cut(s) 180, 223
XspI CTAG 2 cut(s) 44, 150
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.