AT2G31190

Protein root UVB sensitive 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009210
Physical Location & Seq
Reverse (-)
13291191 .. 13293799
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31190.1

Sequence Viewer

Length: 1302 bp
ATGCAGTTTCTTCAGGAGAAGGTGAAGTTGATAAAGAAGGAAGACCCAGTAATGTTGAAGAGCCCTGAAGACTTTCCGGTTTACTGGTTCGAAACCTCTGATTCTGTCTCTCACCGTTATCAGTTCCAATCCGACGGCCACCTCTCTATGAAAGTTGTTGATGATGCAAGACCTGTTCCTCAGAAGATGGTTGAATCTTTCCTTAACAAGTTCTTTCCTTCTGGTTATCCATACAGTGTCAACGAAGGATATCTTAGGTACACACAGTTTCGAGCACTTCAGCATTTCTCTAGTGCAGCATTATCAGTGTTATCGACTCAGTCACTGTTGTTTGCTGCAGGCTTGCGGCCTACACCGGCACAAGCAACTGTTGTTAGCTGGATATTGAAGGATGGGATGCAACATGTCGGAAAGCTAATATGTAGCAATTTGGGTGCAAGAATGGACTCTGAGCCTAAACGGTGGAGGATTCTGGCTGACGTGCTTTACGATCTTGGTACTGGTCTGGAACTCGTTTCTCCATTATGCCCGCATCTGTTTCTTGAAATGGCTGGTCTGGGGAATTTTGCTAAGGGAATGGCTACAGTTGCAGCAAGGGCAACAAGATTACCAATATATTCATCTTTTGCCAAAGAAGGAAATCTTAGTGACATTTTTGCAAAAGGAGAAGCTATCTCTACTCTTTTCAATGTTGCCGGGATAGGTGCTGGTATTCAACTTGCGTCCACAATATGTTCATCAATGGAGGGAAAGTTGGTGGTTGGGTCAATTCTTTCGGTTGTACATGTGTATAGCGTTGTAGAACAAATGCGAGGGGTACCAATCAACACACTGAATCCACAGCGAACCGCTTTGATTGTGGCTAATTTTCTCAAGACTGGTAAAGTCCCAAGCCCTCCTGATTTAAGATTCCAAGAAGACCTAATGTTCCCCGAGAGACCAATCCAAGACGCAGGAAATGTAAAAGTGGGAAGGGCTCTCCATAAAGCTGTGAAGCCTTCTGAGGTACAAAGACTAAAACAAGTGTTTGTAGAAGAGAAGTTTCTATTGAGTCATGGAAAGTCATGGACCGATATGGTCTTAGAGCACGATGCAACCGGTGAAGATGCATTGCGAGGGTGGTTAGTTGCAGCATATGTCAAGTCAATGACAAAGATATATAATGACCCTGATGACATTATATTGCAAGACGCGTATGACAAAATGAACGATGTCTTCAATCCATTTTTATCTCAAGTGCAAGCTAAAGGATGGTATACTGATAGATTTCTCGATGGCACGGGGACAAGATTTGCTTGGTAG

Protein Analysis

433

Amino Acids

48.26

Weight (kDa)

7.71

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 61 - 293 1.9e-74 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 817
AccB1I GGYRCC 1 cut(s) 817
AccI GTMKAC 1 cut(s) 1256
AccII CGCG 1 cut(s) 1193
AciI CCGC 3 cut(s) 346, 530, 849
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 562
AcuI CTGAAG 2 cut(s) 87, 263
AfaI GTAC 5 cut(s) 260, 499, 783, 819, 1008
AflIII ACRYGT 3 cut(s) 403, 784, 1191
AgeI ACCGGT 1 cut(s) 1097
AgsI TTSAA 7 cut(s) 58, 194, 388, 545, 688, 716, 1219
AjiI CACGTC 1 cut(s) 481
AluBI AGCT 5 cut(s) 378, 415, 671, 989, 1244
AluI AGCT 5 cut(s) 378, 415, 671, 989, 1244
Alw21I GWGCWC 2 cut(s) 277, 1089
Alw26I GTCTC 2 cut(s) 112, 931
AlwNI CAGNNNCTG 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 932
AoxI GGCC 2 cut(s) 136, 347
ApeKI GCWGC 4 cut(s) 296, 335, 590, 1130
ApoI RAATTY 1 cut(s) 562
AsiGI ACCGGT 1 cut(s) 1097
Asp700I GAANNNNTTC 1 cut(s) 72
Asp718I GGTACC 1 cut(s) 817
AspS9I GGNCC 1 cut(s) 1068
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 3 cut(s) 34, 104, 1112
AsuII TTCGAA 1 cut(s) 90
AvaI CYCGRG 1 cut(s) 932
AvaII GGWCC 1 cut(s) 1068
BanI GGYRCC 1 cut(s) 817
BanII GRGCYC 2 cut(s) 65, 979
BbsI GAAGAC 4 cut(s) 48, 75, 924, 1207
Bbv12I GWGCWC 2 cut(s) 277, 1089
BbvI GCAGC 4 cut(s) 308, 322, 602, 1142
BccI CCATC 4 cut(s) 181, 386, 1245, 1268
BceAI ACGGC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 697
BcoDI GTCTC 2 cut(s) 112, 931
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 2 cut(s) 336, 582
BisI GCNGC 5 cut(s) 297, 336, 347, 591, 1131
BlsI GCNGC 5 cut(s) 298, 337, 348, 592, 1132
Bme1390I CCNGG 1 cut(s) 697
Bme18I GGWCC 1 cut(s) 1068
BmeT110I CYCGRG 1 cut(s) 932
BmgBI CACGTC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 1068
BmiI GGNNCC 1 cut(s) 819
BmrFI CCNGG 1 cut(s) 697
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 5 cut(s) 154, 387, 541, 1081, 1096
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 4 cut(s) 48, 75, 924, 1207
Bpu10I CCTNAGC 1 cut(s) 570
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 857, 1218
BpuMI CCSGG 1 cut(s) 697
BsaI GGTCTC 1 cut(s) 931
BsaWI WCCGGW 2 cut(s) 76, 1097
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bse118I RCCGGY 2 cut(s) 355, 1097
Bse1I ACTGG 4 cut(s) 47, 89, 505, 883
Bse3DI GCAATG 1 cut(s) 1109
BseGI GGATG 3 cut(s) 397, 402, 1256
BseMI GCAATG 1 cut(s) 1109
BseMII CTCAG 4 cut(s) 194, 332, 441, 993
BseNI ACTGG 4 cut(s) 47, 89, 505, 883
BseXI GCAGC 4 cut(s) 308, 322, 602, 1142
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 1193
BshFI GGCC 2 cut(s) 138, 349
BshNI GGYRCC 1 cut(s) 817
BshTI ACCGGT 1 cut(s) 1097
BsiHKAI GWGCWC 2 cut(s) 277, 1089
BsiHKCI CYCGRG 1 cut(s) 932
BsiSI CCGG 4 cut(s) 77, 356, 696, 1098
BslFI GGGAC 2 cut(s) 872, 1297
BsmAI GTCTC 2 cut(s) 112, 931
BsmFI GGGAC 2 cut(s) 872, 1297
BsnI GGCC 2 cut(s) 138, 349
Bso31I GGTCTC 1 cut(s) 931
BsoBI CYCGRG 1 cut(s) 932
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 4 cut(s) 65, 277, 979, 1089
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 1 cut(s) 490
BspACI CCGC 3 cut(s) 346, 530, 849
BspANI GGCC 2 cut(s) 138, 349
BspCNI CTCAG 4 cut(s) 193, 331, 442, 994
BspFNI CGCG 1 cut(s) 1193
BspLI GGNNCC 1 cut(s) 819
BspMAI CTGCAG 1 cut(s) 340
BspQI GCTCTTC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 817
BspTNI GGTCTC 1 cut(s) 931
BsrDI GCAATG 1 cut(s) 1109
BsrFI RCCGGY 2 cut(s) 355, 1097
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 4 cut(s) 47, 89, 505, 883
BssAI RCCGGY 2 cut(s) 355, 1097
BssMI GATC 1 cut(s) 490
BssNAI GTATAC 1 cut(s) 1257
Bst1107I GTATAC 1 cut(s) 1257
Bst4CI ACNGT 7 cut(s) 116, 236, 267, 327, 370, 462, 586
Bst6I CTCTTC 2 cut(s) 53, 1029
BstAUI TGTACA 1 cut(s) 781
BstBI TTCGAA 1 cut(s) 90
BstC8I GCNNGC 4 cut(s) 340, 344, 530, 1242
BstDEI CTNAG 8 cut(s) 180, 254, 318, 450, 570, 644, 1002, 1081
BstF5I GGATG 3 cut(s) 397, 402, 1256
BstFNI CGCG 1 cut(s) 1193
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 2 cut(s) 112, 931
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 2 cut(s) 587, 596
BstNSI RCATGY 2 cut(s) 407, 788
BstSCI CCNGG 1 cut(s) 695
BstSFI CTRYAG 2 cut(s) 336, 582
BstUI CGCG 1 cut(s) 1193
BstV1I GCAGC 4 cut(s) 308, 322, 602, 1142
BstV2I GAAGAC 4 cut(s) 48, 75, 924, 1207
BstZ17I GTATAC 1 cut(s) 1257
BsuRI GGCC 2 cut(s) 138, 349
BtrI CACGTC 1 cut(s) 481
BtsCI GGATG 3 cut(s) 397, 402, 1256
BtsIMutI CAGTG 4 cut(s) 241, 312, 323, 830
Cac8I GCNNGC 4 cut(s) 340, 344, 530, 1242
CaiI CAGNNNCTG 1 cut(s) 325
Cfr10I RCCGGY 2 cut(s) 355, 1097
Cfr13I GGNCC 1 cut(s) 1068
CseI GACGC 3 cut(s) 711, 959, 1199
Csp6I GTAC 5 cut(s) 259, 498, 782, 818, 1007
CspAI ACCGGT 1 cut(s) 1097
CviAII CATG 4 cut(s) 404, 785, 1055, 1065
CviQI GTAC 5 cut(s) 259, 498, 782, 818, 1007
DdeI CTNAG 8 cut(s) 180, 254, 318, 450, 570, 644, 1002, 1081
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 53, 1029
EarI CTCTTC 2 cut(s) 53, 1029
Eco24I GRGCYC 2 cut(s) 65, 979
Eco31I GGTCTC 1 cut(s) 931
Eco32I GATATC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 1068
Eco57I CTGAAG 2 cut(s) 87, 263
Eco88I CYCGRG 1 cut(s) 932
EcoRV GATATC 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 1111
EcoT38I GRGCYC 2 cut(s) 65, 979
FaeI CATG 4 cut(s) 407, 788, 1058, 1068
FalI AAGNNNNNCTT 5 cut(s) 237, 269, 627, 659, 1279
FaqI GGGAC 2 cut(s) 872, 1297
FatI CATG 4 cut(s) 403, 784, 1054, 1064
FauI CCCGC 1 cut(s) 537
FauNDI CATATG 1 cut(s) 1135
FblI GTMKAC 1 cut(s) 1256
Fnu4HI GCNGC 5 cut(s) 297, 336, 347, 591, 1131
FokI GGATG 3 cut(s) 404, 409, 1263
FriOI GRGCYC 2 cut(s) 65, 979
Fsp4HI GCNGC 5 cut(s) 297, 336, 347, 591, 1131
FspBI CTAG 1 cut(s) 291
GluI GCNGC 5 cut(s) 297, 336, 347, 591, 1131
HaeIII GGCC 2 cut(s) 138, 349
HapII CCGG 4 cut(s) 77, 356, 696, 1098
HgaI GACGC 3 cut(s) 711, 959, 1199
Hin1II CATG 4 cut(s) 407, 788, 1058, 1068
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 8 cut(s) 101, 194, 316, 446, 469, 835, 909, 1051
HpaII CCGG 4 cut(s) 77, 356, 696, 1098
HphI GGTGA 3 cut(s) 34, 104, 1112
Hpy166II GTNNAC 5 cut(s) 82, 241, 261, 726, 1257
Hpy188I TCNGA 6 cut(s) 100, 133, 183, 410, 451, 1003
Hpy188III TCNNGA 6 cut(s) 14, 506, 542, 874, 899, 1271
Hpy8I GTNNAC 5 cut(s) 82, 241, 261, 726, 1257
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 8 cut(s) 13, 31, 228, 239, 382, 629, 966, 1008
HpyCH4III ACNGT 7 cut(s) 116, 236, 267, 327, 370, 462, 586
HpyCH4IV ACGT 1 cut(s) 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 587, 596
HpyF3I CTNAG 8 cut(s) 180, 254, 318, 450, 570, 644, 1002, 1081
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 4 cut(s) 407, 788, 1058, 1068
KpnI GGTACC 1 cut(s) 821
Kzo9I GATC 1 cut(s) 490
LguI GCTCTTC 1 cut(s) 53
Lsp1109I GCAGC 4 cut(s) 308, 322, 602, 1142
LweI GCATC 5 cut(s) 154, 387, 541, 1081, 1096
MaeI CTAG 1 cut(s) 291
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 321, 647
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 8 cut(s) 53, 70, 80, 196, 929, 1046, 1115, 1207
MhlI GDGCHC 4 cut(s) 65, 277, 979, 1089
MluCI AATT 4 cut(s) 427, 562, 768, 865
MluI ACGCGT 1 cut(s) 1191
MlyI GAGTC 3 cut(s) 310, 440, 1060
MmeI TCCRAC 2 cut(s) 156, 388
MnlI CCTC 9 cut(s) 106, 152, 189, 459, 739, 806, 906, 997, 1109
Mph1103I ATGCAT 1 cut(s) 1111
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 2 cut(s) 204, 905
MspI CCGG 4 cut(s) 77, 356, 696, 1098
MspR9I CCNGG 1 cut(s) 697
MvnI CGCG 1 cut(s) 1193
MwoI GCNNNNNNNGC 2 cut(s) 587, 596
NciI CCSGG 1 cut(s) 697
NdeI CATATG 1 cut(s) 1135
NdeII GATC 1 cut(s) 490
NlaIII CATG 4 cut(s) 407, 788, 1058, 1068
NlaIV GGNNCC 1 cut(s) 819
NmuCI GTSAC 2 cut(s) 321, 647
NsiI ATGCAT 1 cut(s) 1111
NspI RCATGY 2 cut(s) 407, 788
NspV TTCGAA 1 cut(s) 90
PciI ACATGT 2 cut(s) 403, 784
PciSI GCTCTTC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 5 cut(s) 101, 194, 469, 835, 909
PflFI GACNNNGTC 1 cut(s) 319
PinAI ACCGGT 1 cut(s) 1097
PkrI GCNGC 5 cut(s) 298, 337, 348, 592, 1132
PleI GAGTC 3 cut(s) 310, 440, 1059
PpsI GAGTC 3 cut(s) 310, 440, 1059
PscI ACATGT 2 cut(s) 403, 784
PspN4I GGNNCC 1 cut(s) 819
PspPI GGNCC 1 cut(s) 1068
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 325
PsyI GACNNNGTC 1 cut(s) 319
RsaI GTAC 5 cut(s) 260, 499, 783, 819, 1008
RsaNI GTAC 5 cut(s) 259, 498, 782, 818, 1007
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 2 cut(s) 204, 905
SatI GCNGC 5 cut(s) 297, 336, 347, 591, 1131
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 1 cut(s) 1068
SchI GAGTC 3 cut(s) 310, 440, 1060
ScrFI CCNGG 1 cut(s) 697
SduI GDGCHC 4 cut(s) 65, 277, 979, 1089
SfaNI GCATC 5 cut(s) 154, 387, 541, 1081, 1096
SfcI CTRYAG 2 cut(s) 336, 582
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 1 cut(s) 1068
SmlI CTYRAG 2 cut(s) 872, 1233
SmoI CTYRAG 2 cut(s) 872, 1233
Sse9I AATT 4 cut(s) 427, 562, 768, 865
SsiI CCGC 3 cut(s) 346, 530, 849
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 695
TaaI ACNGT 7 cut(s) 116, 236, 267, 327, 370, 462, 586
TaiI ACGT 1 cut(s) 483
TaqI TCGA 4 cut(s) 90, 271, 314, 1272
TaqII GACCGA 1 cut(s) 1085
TasI AATT 4 cut(s) 427, 562, 768, 865
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 349
TfiI GAWTC 5 cut(s) 101, 194, 469, 835, 909
Tru1I TTAA 2 cut(s) 204, 905
Tru9I TTAA 2 cut(s) 204, 905
TscAI CASTG 4 cut(s) 241, 312, 330, 837
TseFI GTSAC 2 cut(s) 321, 647
TseI GCWGC 4 cut(s) 296, 335, 590, 1130
Tsp45I GTSAC 2 cut(s) 321, 647
TspDTI ATGAA 4 cut(s) 164, 609, 726, 1220
TspRI CASTG 4 cut(s) 241, 312, 330, 837
Tth111I GACNNNGTC 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 1068
XapI RAATTY 1 cut(s) 562
XceI RCATGY 2 cut(s) 407, 788
XmiI GTMKAC 1 cut(s) 1256
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 1 cut(s) 291
Zsp2I ATGCAT 1 cut(s) 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.