Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009210

Physical Location & Seq

Genomic Coordinates Forward (+)

18738174 .. 18741330

Gene Structure 3157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012433

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAACATACTGGAGAAGATAAAGATGCAGAAGAAGGAGCCAGATAAAGCGCCGCCGCCGCCGCCTGAGCTGCCGGCGTACTGGATCGAAACCTCTGAAGCAGTCTCATACCGCTGTGAATTTGAACCCCACGGTCACCTCTCTGTGAAACTTCTTGATGATTCGAGGCCAGTAATCCGTAGGGTTGCAGATTCCTTCGTCAATAAGTTTTTTCCCTCAGGATATCCATATAGTGTCAATGAGGGATATCTCAGGTACACACAATTTCGGGCACTGCAACACTTCTCCAGTGCAGCGCTTTCGGTGCTTTCAACTCAGTCACTCCTGTTTGCTGCAGGCTTGCGACCTACCCCTGCACAAGCAACTGTTGTTAGTTGGGTCCTAAAGGATGGGATGCAGCACATGGGTAAGCTCATATGCAGTAATTTGGGTGCAAGAATGGATTCAGAGCCTAAACGCTGGAGAATTTTGGCTGATGTGCTCTATGACTTGGGCACTGGCTTAGAAGTTCTTTCTCCTTTATGTCCACAATTTTTTCTTCAAGTTGCAGGCGTAGGCAATTTTGCAAAGGGGATGGCAGTTGTTGCAGCAAGAGCAACAAGATTACCAATTTATTCCTCCTTTGCAAAAGAAGGCAATCTTAGTGACCTGTTTGCAAAAGGGGAGGCAATCTCAACTGTGTTCAATGTTCTTGGAATAGGGTTAGGAATCCAGTTAGCATCTACTATCTGTTCATCAATTCAAGGAAAGATGGTAGTTGGGCCTCTTCTTTCAATTGTACATGTATATTGTGTCATTGAAGAAATGCGGGCAACTCCTGTGAACACTCTGAATTCTCAGAGGACCGCAATGCTTGTGGCTGATTTCATCAAGACAGGAAAAGTATCAAGCCCAGCTGACCTAAGGTATAAAGAAGATCTTCTCTTTCCTGGGCGACTCATAGGAGATGCTGGAAATGTAAAAGTGGGAAAGTCCTTCCGCAAGGTTTTTAAGCCTTCAAAACTTGATGAATTGAAACAAATATTCCCAGACGAGAAGTTTCTTCTGAATCCTGGAAAAAAATCGGTTGACATGGTTTTGGAGCACGGTGCTACTGGTGAAGATGCCTTGAGGGGGTGGCTTGTTGCCGGATTTGCAGCTGACATGGAGAAGTCTTTTCATGTTCCAACTTCAACTGCACTCGAAGAGGCTTACGAGAAGATGAATGATGTATTTGGTCCATTTGTTTCTGAACTTCAGGCCAAGGGGTGGCACACCGATCGTTTTCTTGACGGAACAGGAAGTCGTTTTGCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009914 GO:0009926 GO:0009941 GO:0010224 GO:0010817 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF647

Protein Analysis

433

Amino Acids

47.6

Weight (kDa)

8.61

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVB_sens_prot	PF04884	60 - 292	1.9e-73	Vitamin B6 photo-protection and homoeostasis domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31190 AT2G31190
fragaria_vesca	FvH4_2g21510 FvH4_2g21510
malus_domestica	MD05G1197700.v1.1 MD10G1184300.v1.1
prunus_persica	Prupe.8G224000_v2.0.a1 Prupe.8G224000_v2.0.a1
pyrus_communis	pycom05g18460 pycom10g15960
rosa_chinensis	RchiOBHm_Chr6g0288161
rosa_laevigata	RLG00000012433
rosa_multiflora	Rmu_sc0002207.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180430
rosa_rugosa	Rorug06G0194600 Rorug06G0194600
rosa_samantha	Rh6AG305000 Rh6BG311000 Rh6CG319000 Rh6DG304100
rosa_wichuraiana	Rw0G014450 Rw6G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1248
AciI	CCGC	8 cut(s)	53, 56, 59, 62, 112, 808, 846, 979
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	3 cut(s)	119, 465, 832
AcuI	CTGAAG	2 cut(s)	117, 1220
AfaI	GTAC	3 cut(s)	80, 257, 780
AfeI	AGCGCT	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	1113, 1248
AflIII	ACRYGT	1 cut(s)	781
AjnI	CCWGG	2 cut(s)	928, 1051
AluBI	AGCT	4 cut(s)	70, 412, 896, 1139
AluI	AGCT	4 cut(s)	70, 412, 896, 1139
Alw21I	GWGCWC	2 cut(s)	483, 1086
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	92
Aor51HI	AGCGCT	1 cut(s)	297
AoxI	GGCC	3 cut(s)	167, 761, 1239
ApeKI	GCWGC	6 cut(s)	70, 293, 332, 397, 587, 1136
ApoI	RAATTY	3 cut(s)	119, 465, 832
Asp700I	GAANNNNTTC	2 cut(s)	442, 918
AspLEI	GCGC	2 cut(s)	52, 298
AspS9I	GGNCC	4 cut(s)	379, 761, 843, 1217
AsuHPI	GGTGA	2 cut(s)	128, 1109
AvaII	GGWCC	3 cut(s)	379, 843, 1217
AxyI	CCTNAGG	2 cut(s)	217, 902
BaeGI	GKGCMC	2 cut(s)	274, 497
Bbv12I	GWGCWC	2 cut(s)	483, 1086
BbvI	GCAGC	6 cut(s)	57, 305, 319, 409, 599, 1148
BccI	CCATC	3 cut(s)	383, 568, 745
BcgI	CGANNNNNNTGC	4 cut(s)	282, 316, 1241, 1275
BciT130I	CCWGG	2 cut(s)	930, 1053
BcoDI	GTCTC	1 cut(s)	109
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	2 cut(s)	53, 299
BglII	AGATCT	1 cut(s)	916
Bme1390I	CCNGG	2 cut(s)	930, 1053
Bme18I	GGWCC	3 cut(s)	379, 843, 1217
BmgT120I	GGNCC	4 cut(s)	379, 761, 843, 1217
BmiI	GGNNCC	2 cut(s)	39, 380
BmrFI	CCNGG	2 cut(s)	930, 1053
BmsI	GCATC	5 cut(s)	15, 384, 728, 937, 1093
BplI	GAGNNNNNCTC	2 cut(s)	656, 688
BpmI	CTGGAG	3 cut(s)	32, 271, 481
Bpu10I	CCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	1129
BsaJI	CCNNGG	3 cut(s)	130, 929, 1242
Bsc4I	CCNNNNNNNGG	2 cut(s)	1113, 1248
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	7 cut(s)	15, 86, 170, 288, 502, 712, 1099
Bse21I	CCTNAGG	2 cut(s)	217, 902
Bse3DI	GCAATG	1 cut(s)	855
BseBI	CCWGG	2 cut(s)	930, 1053
BseDI	CCNNGG	3 cut(s)	130, 929, 1242
BseGI	GGATG	3 cut(s)	394, 399, 579
BseLI	CCNNNNNNNGG	2 cut(s)	1113, 1248
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	5 cut(s)	57, 231, 265, 329, 851
BseNI	ACTGG	7 cut(s)	15, 86, 170, 288, 502, 712, 1099
BseSI	GKGCMC	2 cut(s)	274, 497
BseXI	GCAGC	6 cut(s)	57, 305, 319, 409, 599, 1148
BseYI	CCCAGC	1 cut(s)	892
BsgI	GTGCAG	3 cut(s)	312, 339, 1161
Bsh1285I	CGRYCG	1 cut(s)	1261
BshFI	GGCC	3 cut(s)	169, 763, 1241
BsiEI	CGRYCG	1 cut(s)	1261
BsiHKAI	GWGCWC	2 cut(s)	483, 1086
BsiSI	CCGG	2 cut(s)	74, 1128
BslI	CCNNNNNNNGG	2 cut(s)	1113, 1248
BsmAI	GTCTC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	169, 763, 1241
Bsp1286I	GDGCHC	4 cut(s)	274, 483, 497, 1086
Bsp1407I	TGTACA	1 cut(s)	778
Bsp143I	GATC	3 cut(s)	84, 916, 1258
BspACI	CCGC	8 cut(s)	53, 56, 59, 62, 112, 808, 846, 979
BspANI	GGCC	3 cut(s)	169, 763, 1241
BspCNI	CTCAG	5 cut(s)	58, 230, 264, 328, 850
BspLI	GGNNCC	2 cut(s)	39, 380
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	855
BsrFI	RCCGGY	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	778
BsrI	ACTGG	7 cut(s)	15, 86, 170, 288, 502, 712, 1099
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	3 cut(s)	130, 929, 1242
BssMI	GATC	3 cut(s)	84, 916, 1258
BssT1I	CCWWGG	1 cut(s)	1242
Bst2UI	CCWGG	2 cut(s)	930, 1053
Bst4CI	ACNGT	4 cut(s)	134, 367, 679, 1088
Bst6I	CTCTTC	2 cut(s)	771, 1179
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	778
BstC8I	GCNNGC	5 cut(s)	75, 337, 341, 550, 810
BstDEI	CTNAG	8 cut(s)	66, 217, 251, 315, 502, 641, 837, 902
BstDSI	CCRYGG	1 cut(s)	130
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	3 cut(s)	394, 399, 579
BstH2I	RGCGCY	2 cut(s)	53, 299
BstHHI	GCGC	2 cut(s)	52, 298
BstKTI	GATC	3 cut(s)	87, 919, 1261
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	84, 916, 1258
BstMCI	CGRYCG	1 cut(s)	1261
BstMWI	GCNNNNNNNGC	8 cut(s)	58, 61, 67, 70, 304, 584, 593, 1133
BstNI	CCWGG	2 cut(s)	930, 1053
BstNSI	RCATGY	1 cut(s)	785
BstPI	GGTNACC	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	928, 1051
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	2 cut(s)	274, 497
BstV1I	GCAGC	6 cut(s)	57, 305, 319, 409, 599, 1148
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
Bsu36I	CCTNAGG	2 cut(s)	217, 902
BsuRI	GGCC	3 cut(s)	169, 763, 1241
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	394, 399, 579
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	3 cut(s)	272, 295, 495
Cac8I	GCNNGC	5 cut(s)	75, 337, 341, 550, 810
CfoI	GCGC	2 cut(s)	52, 298
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	4 cut(s)	379, 761, 843, 1217
Csp6I	GTAC	3 cut(s)	79, 256, 779
CspCI	CAANNNNNGTGG	2 cut(s)	837, 872
CviAII	CATG	5 cut(s)	403, 782, 1072, 1144, 1160
CviQI	GTAC	3 cut(s)	79, 256, 779
DdeI	CTNAG	8 cut(s)	66, 217, 251, 315, 502, 641, 837, 902
DpnI	GATC	3 cut(s)	86, 918, 1260
DpnII	GATC	3 cut(s)	84, 916, 1258
Eam1104I	CTCTTC	2 cut(s)	771, 1179
EarI	CTCTTC	2 cut(s)	771, 1179
Eco130I	CCWWGG	1 cut(s)	1242
Eco32I	GATATC	2 cut(s)	224, 248
Eco47I	GGWCC	3 cut(s)	379, 843, 1217
Eco47III	AGCGCT	1 cut(s)	297
Eco57I	CTGAAG	2 cut(s)	117, 1220
Eco81I	CCTNAGG	2 cut(s)	217, 902
Eco91I	GGTNACC	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	379
EcoO65I	GGTNACC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	832
EcoRII	CCWGG	2 cut(s)	928, 1051
EcoRV	GATATC	2 cut(s)	224, 248
EcoT14I	CCWWGG	1 cut(s)	1242
ErhI	CCWWGG	1 cut(s)	1242
FaeI	CATG	5 cut(s)	406, 785, 1075, 1147, 1163
FalI	AAGNNNNNCTT	4 cut(s)	624, 656, 903, 935
FatI	CATG	5 cut(s)	402, 781, 1071, 1143, 1159
FauI	CCCGC	1 cut(s)	801
FauNDI	CATATG	1 cut(s)	416
FokI	GGATG	3 cut(s)	401, 406, 586
GlaI	GCGC	2 cut(s)	51, 297
GsaI	CCCAGC	1 cut(s)	896
GsuI	CTGGAG	3 cut(s)	32, 271, 481
HaeII	RGCGCY	2 cut(s)	53, 299
HaeIII	GGCC	3 cut(s)	169, 763, 1241
HapII	CCGG	2 cut(s)	74, 1128
HhaI	GCGC	2 cut(s)	52, 298
Hin1II	CATG	5 cut(s)	406, 785, 1075, 1147, 1163
Hin6I	GCGC	2 cut(s)	50, 296
HinP1I	GCGC	2 cut(s)	50, 296
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HinfI	GANTC	6 cut(s)	161, 191, 443, 708, 936, 1048
HpaII	CCGG	2 cut(s)	74, 1128
HphI	GGTGA	2 cut(s)	128, 1109
Hpy166II	GTNNAC	4 cut(s)	258, 527, 823, 1069
Hpy188I	TCNGA	6 cut(s)	97, 448, 831, 840, 1047, 1231
Hpy188III	TCNNGA	4 cut(s)	155, 219, 871, 1268
Hpy8I	GTNNAC	4 cut(s)	258, 527, 823, 1069
HpyAV	CCTTC	5 cut(s)	28, 205, 626, 985, 1005
HpyCH4III	ACNGT	4 cut(s)	134, 367, 679, 1088
HpyF10VI	GCNNNNNNNGC	8 cut(s)	58, 61, 67, 70, 304, 584, 593, 1133
HpyF3I	CTNAG	8 cut(s)	66, 217, 251, 315, 502, 641, 837, 902
Hsp92II	CATG	5 cut(s)	406, 785, 1075, 1147, 1163
HspAI	GCGC	2 cut(s)	50, 296
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	84, 916, 1258
LmnI	GCTCC	2 cut(s)	37, 1081
Lsp1109I	GCAGC	6 cut(s)	57, 305, 319, 409, 599, 1148
LweI	GCATC	5 cut(s)	15, 384, 728, 937, 1093
MaeIII	GTNAC	3 cut(s)	134, 318, 644
MalI	GATC	3 cut(s)	86, 918, 1260
MboI	GATC	3 cut(s)	84, 916, 1258
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	4 cut(s)	274, 483, 497, 1086
MlyI	GAGTC	1 cut(s)	930
MmeI	TCCRAC	1 cut(s)	1190
MroNI	GCCGGC	1 cut(s)	73
MroXI	GAANNNNTTC	2 cut(s)	442, 918
MseI	TTAA	1 cut(s)	990
MspA1I	CMGCKG	3 cut(s)	114, 896, 1139
MspI	CCGG	2 cut(s)	74, 1128
MspR9I	CCNGG	2 cut(s)	930, 1053
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	2 cut(s)	930, 1053
MwoI	GCNNNNNNNGC	8 cut(s)	58, 61, 67, 70, 304, 584, 593, 1133
NaeI	GCCGGC	1 cut(s)	75
NdeI	CATATG	1 cut(s)	416
NdeII	GATC	3 cut(s)	84, 916, 1258
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	5 cut(s)	406, 785, 1075, 1147, 1163
NlaIV	GGNNCC	2 cut(s)	39, 380
NmuCI	GTSAC	3 cut(s)	134, 318, 644
NspI	RCATGY	1 cut(s)	785
PciI	ACATGT	1 cut(s)	781
PdiI	GCCGGC	1 cut(s)	75
PdmI	GAANNNNTTC	2 cut(s)	442, 918
PfeI	GAWTC	5 cut(s)	161, 191, 443, 708, 1048
PflMI	CCANNNNNTGG	1 cut(s)	1248
PfoI	TCCNGGA	1 cut(s)	1051
Ple19I	CGATCG	1 cut(s)	1261
PleI	GAGTC	1 cut(s)	930
PpsI	GAGTC	1 cut(s)	930
PpuMI	RGGWCCY	1 cut(s)	379
PscI	ACATGT	1 cut(s)	781
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	928, 1051
PspEI	GGTNACC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	892
PspGI	CCWGG	2 cut(s)	928, 1051
PspN4I	GGNNCC	2 cut(s)	39, 380
PspPI	GGNCC	4 cut(s)	379, 761, 843, 1217
PspPPI	RGGWCCY	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	916
PvuI	CGATCG	1 cut(s)	1261
PvuII	CAGCTG	2 cut(s)	896, 1139
RsaI	GTAC	3 cut(s)	80, 257, 780
RsaNI	GTAC	3 cut(s)	79, 256, 779
SaqAI	TTAA	1 cut(s)	990
Sau3AI	GATC	3 cut(s)	84, 916, 1258
Sau96I	GGNCC	4 cut(s)	379, 761, 843, 1217
SchI	GAGTC	1 cut(s)	930
ScrFI	CCNGG	2 cut(s)	930, 1053
SduI	GDGCHC	4 cut(s)	274, 483, 497, 1086
SfaNI	GCATC	5 cut(s)	15, 384, 728, 937, 1093
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	3 cut(s)	379, 843, 1217
SmlI	CTYRAG	1 cut(s)	1108
SmoI	CTYRAG	1 cut(s)	1108
SsiI	CCGC	8 cut(s)	53, 56, 59, 62, 112, 808, 846, 979
SspI	AATATT	1 cut(s)	1023
StyD4I	CCNGG	2 cut(s)	928, 1051
StyI	CCWWGG	1 cut(s)	1242
TaaI	ACNGT	4 cut(s)	134, 367, 679, 1088
TaqI	TCGA	3 cut(s)	87, 164, 1182
TatI	WGTACW	1 cut(s)	778
TauI	GCSGC	4 cut(s)	55, 58, 61, 64
TfiI	GAWTC	5 cut(s)	161, 191, 443, 708, 1048
Tru1I	TTAA	1 cut(s)	990
Tru9I	TTAA	1 cut(s)	990
TscAI	CASTG	3 cut(s)	279, 295, 502
TseFI	GTSAC	3 cut(s)	134, 318, 644
TseI	GCWGC	6 cut(s)	70, 293, 332, 397, 587, 1136
Tsp45I	GTSAC	3 cut(s)	134, 318, 644
TspDTI	ATGAA	6 cut(s)	17, 723, 856, 1023, 1148, 1217
TspGWI	ACGGA	2 cut(s)	167, 1287
TspRI	CASTG	3 cut(s)	279, 295, 502
Van91I	CCANNNNNTGG	1 cut(s)	1248
VpaK11BI	GGWCC	3 cut(s)	379, 843, 1217
XapI	RAATTY	3 cut(s)	119, 465, 832
XceI	RCATGY	1 cut(s)	785
XmnI	GAANNNNTTC	2 cut(s)	442, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.