FvH4_2g21510

UPF0420 protein C16orf58 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
17878913 .. 17885582
6670 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21510.t2

Sequence Viewer

Length: 1314 bp
ATGTTCTCCATGAACTTACTGGAGAAGATCAAATTGCAGAAGAAGGAGCCAGATAAAGCGCCGCCGCCGCCTCCGCCGCCTGAGGTGCCCGTGTACTGGATTGAAACCTCTGAAGCAGTCTCATACCGCTGTGAATTTGAACCCCAGGGTCATCTCTCTGTTAAGATTCTTGATGACTCGAGGCCAGTAGTTCGTAGGGTTGCAGATTCGTTTGTTAATAAGTTTTTCCCTTCAGGATATCCATACAGTGTCAATGAGGGATATCTCAGGTACACACAGTTTCGGGCACTGCAACACTTCACCAGTGCAGCGCTGTCAGTGCTTTCAACTCAGTCACTCTTGTTTGCTGCAGGCTTGCGACCTACTCCTGCACAAGCAACTGTTGTTAGTTGGGTCCTGAAGGATGGGATGCAGCACATGGGTAAGCTCATATGTAGTAATTTGGGTGCAAGAATGGATTCCGAGCCTAAGCGCTGGAGAATTTTGGCTGACGTACTCTATGACTTGGGCACTGGCTTAGAAGTTCTTTCTCCTTTATGTCCACAACTTTTTCTTCAAGTTGCAGGCCTAGGCAATTTTGCAAAGGGGATGGCAGTTGTTGCAGCAAGAGCAACGAGATTACCAATTTATTCTTCCTTTGCCAAAGAAGGCAATCTTAGTGACCTGTTTGCCAAAGGGGAGGCAATCTCAACTGTGTTCAATGTTCTTGGAATAGGGTTAGGGATCCAGTTAGCATCTACTATTTGTTCATCAATTCAAGGAAAGATGGTTGTTGGGCCTCTTTTATCAGTTGTACATGTATACTGTGTCATTGAAGAAATGCGGGCAACTCCTGTGAACACACTTAATCCTCAGAGGACTGCAATGCTTGTGGCTGATTTCATCAAGACAGGAAAAGTATCAAGCCCAGCTGACCTGAGGTATAAAGAAGATCTTCTCTTTCCTGGGAGACTCATAGAAGATGCTGGCAATGTAAAAGTGGGGAAGTCTTTCCGCAAGGTGTTTAAGCCTTCAAAACTTGATGAATTAAAACAAATATTCCCAGACGAGAAGTTTCTTCTTAATCCTGGAAAGAAATCAGTTGACATGGTATTGGAGCACAGTGCTACTGGTGAAGATGCCTTGAGGGGGTGGCTTGTTGCCGGATATGCAGCTGACATGGAGAAGTCTTTTCATGTTCCAACTTCAACTGCACTCGAAGAGGCTTATGAGAAGATGAATGATGTATTTGGTCCATTTATTTCTGAACTTCAGGCCAAGGGGTGGCACACTGATCGTTTTCTCGATGGAACAGGAAGTCGTTTTGCTTGGTAG

Protein Analysis

438

Amino Acids

48.26

Weight (kDa)

8.41

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NuA4 PF09340 16 - 92 9.1e-26 Histone acetyltransferase subunit NuA4
UVB_sens_prot PF04884 279 - 527 1.8e-65 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AccB7I CCANNNNNTGG 1 cut(s) 1263
AccI GTMKAC 1 cut(s) 801
AciI CCGC 8 cut(s) 62, 65, 68, 74, 77, 127, 823, 994
AclWI GGATC 2 cut(s) 718, 731
AcsI RAATTY 2 cut(s) 134, 480
AcuI CTGAAG 4 cut(s) 132, 216, 419, 1235
AfaI GTAC 4 cut(s) 95, 272, 495, 795
AfeI AGCGCT 2 cut(s) 312, 473
AfiI CCNNNNNNNGG 3 cut(s) 96, 1128, 1263
AflIII ACRYGT 1 cut(s) 796
AgsI TTSAA 9 cut(s) 104, 140, 327, 557, 700, 758, 815, 1014, 1188
AjnI CCWGG 3 cut(s) 144, 943, 1066
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
AluBI AGCT 3 cut(s) 427, 911, 1154
AluI AGCT 3 cut(s) 427, 911, 1154
Alw21I GWGCWC 1 cut(s) 1101
Alw26I GTCTC 2 cut(s) 124, 943
AlwI GGATC 2 cut(s) 718, 731
Ama87I CYCGRG 1 cut(s) 178
Aor51HI AGCGCT 2 cut(s) 312, 473
AoxI GGCC 4 cut(s) 182, 565, 776, 1254
ApeKI GCWGC 5 cut(s) 308, 347, 412, 602, 1151
ApoI RAATTY 2 cut(s) 134, 480
Asp700I GAANNNNTTC 3 cut(s) 457, 933, 989
AspA2I CCTAGG 1 cut(s) 568
AspLEI GCGC 3 cut(s) 61, 313, 474
AspS9I GGNCC 3 cut(s) 394, 776, 1232
AsuHPI GGTGA 2 cut(s) 292, 1124
AvaI CYCGRG 1 cut(s) 178
AvaII GGWCC 2 cut(s) 394, 1232
AvrII CCTAGG 1 cut(s) 568
AxyI CCTNAGG 2 cut(s) 81, 917
BaeGI GKGCMC 3 cut(s) 90, 289, 512
BamHI GGATCC 1 cut(s) 723
BanI GGYRCC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 1101
BbvI GCAGC 5 cut(s) 320, 334, 424, 614, 1163
BccI CCATC 4 cut(s) 398, 583, 760, 1280
BcgI CGANNNNNNTGC 2 cut(s) 1256, 1290
BciT130I CCWGG 3 cut(s) 146, 945, 1068
BcoDI GTCTC 2 cut(s) 124, 943
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 1 cut(s) 348
BfoI RGCGCY 3 cut(s) 62, 314, 475
BglII AGATCT 1 cut(s) 931
BisI GCNGC 9 cut(s) 62, 65, 68, 77, 309, 348, 413, 603, 1152
BlnI CCTAGG 1 cut(s) 568
BlsI GCNGC 9 cut(s) 63, 66, 69, 78, 310, 349, 414, 604, 1153
Bme1390I CCNGG 3 cut(s) 146, 945, 1068
Bme18I GGWCC 2 cut(s) 394, 1232
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 3 cut(s) 394, 776, 1232
BmiI GGNNCC 4 cut(s) 48, 87, 395, 725
BmrFI CCNGG 3 cut(s) 146, 945, 1068
BmsI GCATC 4 cut(s) 399, 743, 952, 1108
BplI GAGNNNNNCTC 2 cut(s) 671, 703
BpmI CTGGAG 2 cut(s) 41, 496
Bpu10I CCTNAGC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 1144
BsaJI CCNNGG 5 cut(s) 144, 145, 568, 944, 1257
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 1128, 1263
Bse1I ACTGG 7 cut(s) 24, 101, 185, 303, 517, 727, 1114
Bse21I CCTNAGG 2 cut(s) 81, 917
Bse3DI GCAATG 2 cut(s) 870, 976
BseBI CCWGG 3 cut(s) 146, 945, 1068
BseDI CCNNGG 5 cut(s) 144, 145, 568, 944, 1257
BseGI GGATG 3 cut(s) 409, 414, 594
BseLI CCNNNNNNNGG 3 cut(s) 96, 1128, 1263
BseMI GCAATG 2 cut(s) 870, 976
BseMII CTCAG 5 cut(s) 72, 280, 344, 866, 908
BseNI ACTGG 7 cut(s) 24, 101, 185, 303, 517, 727, 1114
BseSI GKGCMC 3 cut(s) 90, 289, 512
BseXI GCAGC 5 cut(s) 320, 334, 424, 614, 1163
BseYI CCCAGC 1 cut(s) 907
BsgI GTGCAG 3 cut(s) 327, 354, 1176
BshFI GGCC 4 cut(s) 184, 567, 778, 1256
BshNI GGYRCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 1101
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 1143
BslI CCNNNNNNNGG 3 cut(s) 96, 1128, 1263
BsmAI GTCTC 2 cut(s) 124, 943
BsnI GGCC 4 cut(s) 184, 567, 778, 1256
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 4 cut(s) 90, 289, 512, 1101
Bsp1407I TGTACA 1 cut(s) 793
Bsp143I GATC 4 cut(s) 27, 723, 931, 1273
BspACI CCGC 8 cut(s) 62, 65, 68, 74, 77, 127, 823, 994
BspANI GGCC 4 cut(s) 184, 567, 778, 1256
BspCNI CTCAG 5 cut(s) 73, 279, 343, 865, 909
BspLI GGNNCC 4 cut(s) 48, 87, 395, 725
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 2 cut(s) 718, 731
BspT107I GGYRCC 1 cut(s) 85
BsrDI GCAATG 2 cut(s) 870, 976
BsrGI TGTACA 1 cut(s) 793
BsrI ACTGG 7 cut(s) 24, 101, 185, 303, 517, 727, 1114
BssECI CCNNGG 5 cut(s) 144, 145, 568, 944, 1257
BssMI GATC 4 cut(s) 27, 723, 931, 1273
BssNAI GTATAC 1 cut(s) 802
BssT1I CCWWGG 2 cut(s) 568, 1257
Bst1107I GTATAC 1 cut(s) 802
Bst2UI CCWGG 3 cut(s) 146, 945, 1068
Bst4CI ACNGT 6 cut(s) 248, 279, 382, 694, 806, 1103
Bst6I CTCTTC 1 cut(s) 1194
BstAPI GCANNNNNTGC 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 793
BstC8I GCNNGC 5 cut(s) 352, 356, 565, 825, 967
BstDEI CTNAG 8 cut(s) 81, 266, 330, 468, 517, 656, 852, 917
BstF5I GGATG 3 cut(s) 409, 414, 594
BstH2I RGCGCY 3 cut(s) 62, 314, 475
BstHHI GCGC 3 cut(s) 61, 313, 474
BstKTI GATC 4 cut(s) 30, 726, 934, 1276
BstMAI GTCTC 2 cut(s) 124, 943
BstMBI GATC 4 cut(s) 27, 723, 931, 1273
BstMWI GCNNNNNNNGC 8 cut(s) 67, 73, 76, 85, 319, 599, 608, 1148
BstNI CCWGG 3 cut(s) 146, 945, 1068
BstNSI RCATGY 1 cut(s) 800
BstSCI CCNGG 3 cut(s) 144, 943, 1066
BstSFI CTRYAG 1 cut(s) 348
BstSLI GKGCMC 3 cut(s) 90, 289, 512
BstV1I GCAGC 5 cut(s) 320, 334, 424, 614, 1163
BstX2I RGATCY 2 cut(s) 723, 931
BstYI RGATCY 2 cut(s) 723, 931
BstZ17I GTATAC 1 cut(s) 802
Bsu36I CCTNAGG 2 cut(s) 81, 917
BsuRI GGCC 4 cut(s) 184, 567, 778, 1256
BtsCI GGATG 3 cut(s) 409, 414, 594
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 7 cut(s) 253, 287, 310, 324, 510, 1108, 1269
Cac8I GCNNGC 5 cut(s) 352, 356, 565, 825, 967
CfoI GCGC 3 cut(s) 61, 313, 474
Cfr13I GGNCC 3 cut(s) 394, 776, 1232
Csp6I GTAC 4 cut(s) 94, 271, 494, 794
CspCI CAANNNNNGTGG 2 cut(s) 852, 887
CviAII CATG 6 cut(s) 10, 418, 797, 1087, 1159, 1175
CviQI GTAC 4 cut(s) 94, 271, 494, 794
DdeI CTNAG 8 cut(s) 81, 266, 330, 468, 517, 656, 852, 917
DpnI GATC 4 cut(s) 29, 725, 933, 1275
DpnII GATC 4 cut(s) 27, 723, 931, 1273
Eam1104I CTCTTC 1 cut(s) 1194
EarI CTCTTC 1 cut(s) 1194
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 568, 1257
Eco147I AGGCCT 1 cut(s) 567
Eco32I GATATC 2 cut(s) 239, 263
Eco47I GGWCC 2 cut(s) 394, 1232
Eco47III AGCGCT 2 cut(s) 312, 473
Eco57I CTGAAG 4 cut(s) 132, 216, 419, 1235
Eco81I CCTNAGG 2 cut(s) 81, 917
Eco88I CYCGRG 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 3 cut(s) 144, 943, 1066
EcoRV GATATC 2 cut(s) 239, 263
EcoT14I CCWWGG 2 cut(s) 568, 1257
ErhI CCWWGG 2 cut(s) 568, 1257
FaeI CATG 6 cut(s) 13, 421, 800, 1090, 1162, 1178
FalI AAGNNNNNCTT 4 cut(s) 639, 671, 918, 950
FatI CATG 6 cut(s) 9, 417, 796, 1086, 1158, 1174
FauI CCCGC 1 cut(s) 816
FauNDI CATATG 1 cut(s) 431
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 9 cut(s) 62, 65, 68, 77, 309, 348, 413, 603, 1152
FokI GGATG 3 cut(s) 416, 421, 601
Fsp4HI GCNGC 9 cut(s) 62, 65, 68, 77, 309, 348, 413, 603, 1152
FspBI CTAG 1 cut(s) 569
GlaI GCGC 3 cut(s) 60, 312, 473
GluI GCNGC 9 cut(s) 62, 65, 68, 77, 309, 348, 413, 603, 1152
GsaI CCCAGC 1 cut(s) 911
GsuI CTGGAG 2 cut(s) 41, 496
HaeII RGCGCY 3 cut(s) 62, 314, 475
HaeIII GGCC 4 cut(s) 184, 567, 778, 1256
HapII CCGG 1 cut(s) 1143
HhaI GCGC 3 cut(s) 61, 313, 474
Hin1II CATG 6 cut(s) 13, 421, 800, 1090, 1162, 1178
Hin6I GCGC 3 cut(s) 59, 311, 472
HinP1I GCGC 3 cut(s) 59, 311, 472
HincII GTYRAC 1 cut(s) 1084
HindII GTYRAC 1 cut(s) 1084
HinfI GANTC 5 cut(s) 166, 176, 206, 458, 951
HpaII CCGG 1 cut(s) 1143
HphI GGTGA 2 cut(s) 292, 1124
Hpy166II GTNNAC 6 cut(s) 94, 273, 542, 802, 838, 1084
Hpy188I TCNGA 4 cut(s) 112, 463, 855, 1246
Hpy188III TCNNGA 5 cut(s) 170, 234, 397, 886, 1283
Hpy8I GTNNAC 6 cut(s) 94, 273, 542, 802, 838, 1084
HpyAV CCTTC 5 cut(s) 37, 240, 394, 641, 1020
HpyCH4III ACNGT 6 cut(s) 248, 279, 382, 694, 806, 1103
HpyCH4IV ACGT 1 cut(s) 492
HpyF10VI GCNNNNNNNGC 8 cut(s) 67, 73, 76, 85, 319, 599, 608, 1148
HpyF3I CTNAG 8 cut(s) 81, 266, 330, 468, 517, 656, 852, 917
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 6 cut(s) 13, 421, 800, 1090, 1162, 1178
HspAI GCGC 3 cut(s) 59, 311, 472
Kzo9I GATC 4 cut(s) 27, 723, 931, 1273
LmnI GCTCC 2 cut(s) 46, 1096
Lsp1109I GCAGC 5 cut(s) 320, 334, 424, 614, 1163
LweI GCATC 4 cut(s) 399, 743, 952, 1108
MaeI CTAG 1 cut(s) 569
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 333, 659
MalI GATC 4 cut(s) 29, 725, 933, 1275
MboI GATC 4 cut(s) 27, 723, 931, 1273
MflI RGATCY 2 cut(s) 723, 931
MhlI GDGCHC 4 cut(s) 90, 289, 512, 1101
MluCI AATT 8 cut(s) 32, 134, 439, 480, 574, 624, 753, 1025
MlyI GAGTC 2 cut(s) 170, 945
MmeI TCCRAC 1 cut(s) 1205
MroXI GAANNNNTTC 3 cut(s) 457, 933, 989
MseI TTAA 6 cut(s) 162, 216, 846, 1005, 1028, 1062
MspA1I CMGCKG 3 cut(s) 129, 911, 1154
MspI CCGG 1 cut(s) 1143
MspR9I CCNGG 3 cut(s) 146, 945, 1068
MvaI CCWGG 3 cut(s) 146, 945, 1068
MwoI GCNNNNNNNGC 8 cut(s) 67, 73, 76, 85, 319, 599, 608, 1148
NdeI CATATG 1 cut(s) 431
NdeII GATC 4 cut(s) 27, 723, 931, 1273
NlaIII CATG 6 cut(s) 13, 421, 800, 1090, 1162, 1178
NlaIV GGNNCC 4 cut(s) 48, 87, 395, 725
NmuCI GTSAC 2 cut(s) 333, 659
NspI RCATGY 1 cut(s) 800
PaeR7I CTCGAG 1 cut(s) 178
PasI CCCWGGG 1 cut(s) 145
PceI AGGCCT 1 cut(s) 567
PciI ACATGT 1 cut(s) 796
PdmI GAANNNNTTC 3 cut(s) 457, 933, 989
PfeI GAWTC 3 cut(s) 166, 206, 458
PflMI CCANNNNNTGG 1 cut(s) 1263
PfoI TCCNGGA 1 cut(s) 1066
PkrI GCNGC 9 cut(s) 63, 66, 69, 78, 310, 349, 414, 604, 1153
PleI GAGTC 2 cut(s) 170, 945
PpsI GAGTC 2 cut(s) 170, 945
PpuMI RGGWCCY 1 cut(s) 394
PscI ACATGT 1 cut(s) 796
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 3 cut(s) 144, 943, 1066
PspFI CCCAGC 1 cut(s) 907
PspGI CCWGG 3 cut(s) 144, 943, 1066
PspN4I GGNNCC 4 cut(s) 48, 87, 395, 725
PspPI GGNCC 3 cut(s) 394, 776, 1232
PspPPI RGGWCCY 1 cut(s) 394
PspXI VCTCGAGB 1 cut(s) 178
PstI CTGCAG 1 cut(s) 352
PsuI RGATCY 2 cut(s) 723, 931
PvuII CAGCTG 2 cut(s) 911, 1154
RsaI GTAC 4 cut(s) 95, 272, 495, 795
RsaNI GTAC 4 cut(s) 94, 271, 494, 794
SaqAI TTAA 6 cut(s) 162, 216, 846, 1005, 1028, 1062
SatI GCNGC 9 cut(s) 62, 65, 68, 77, 309, 348, 413, 603, 1152
Sau3AI GATC 4 cut(s) 27, 723, 931, 1273
Sau96I GGNCC 3 cut(s) 394, 776, 1232
SchI GAGTC 2 cut(s) 170, 945
ScrFI CCNGG 3 cut(s) 146, 945, 1068
SduI GDGCHC 4 cut(s) 90, 289, 512, 1101
SfaNI GCATC 4 cut(s) 399, 743, 952, 1108
SfcI CTRYAG 1 cut(s) 348
Sfr274I CTCGAG 1 cut(s) 178
SinI GGWCC 2 cut(s) 394, 1232
SlaI CTCGAG 1 cut(s) 178
SmlI CTYRAG 2 cut(s) 178, 1123
SmoI CTYRAG 2 cut(s) 178, 1123
Sse9I AATT 8 cut(s) 32, 134, 439, 480, 574, 624, 753, 1025
SseBI AGGCCT 1 cut(s) 567
SsiI CCGC 8 cut(s) 62, 65, 68, 74, 77, 127, 823, 994
SspI AATATT 1 cut(s) 1038
SspMI CTAG 1 cut(s) 569
StuI AGGCCT 1 cut(s) 567
StyD4I CCNGG 3 cut(s) 144, 943, 1066
StyI CCWWGG 2 cut(s) 568, 1257
TaaI ACNGT 6 cut(s) 248, 279, 382, 694, 806, 1103
TaiI ACGT 1 cut(s) 495
TaqI TCGA 3 cut(s) 179, 1197, 1284
TasI AATT 8 cut(s) 32, 134, 439, 480, 574, 624, 753, 1025
TatI WGTACW 2 cut(s) 93, 793
TauI GCSGC 4 cut(s) 64, 67, 70, 79
TfiI GAWTC 3 cut(s) 166, 206, 458
Tru1I TTAA 6 cut(s) 162, 216, 846, 1005, 1028, 1062
Tru9I TTAA 6 cut(s) 162, 216, 846, 1005, 1028, 1062
TscAI CASTG 7 cut(s) 253, 294, 310, 324, 517, 1108, 1276
TseFI GTSAC 2 cut(s) 333, 659
TseI GCWGC 5 cut(s) 308, 347, 412, 602, 1151
Tsp45I GTSAC 2 cut(s) 333, 659
TspDTI ATGAA 6 cut(s) 26, 738, 871, 1038, 1163, 1232
TspRI CASTG 7 cut(s) 253, 294, 310, 324, 517, 1108, 1276
Van91I CCANNNNNTGG 1 cut(s) 1263
VpaK11BI GGWCC 2 cut(s) 394, 1232
XapI RAATTY 2 cut(s) 134, 480
XceI RCATGY 1 cut(s) 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XhoI CTCGAG 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 801
XmnI GAANNNNTTC 3 cut(s) 457, 933, 989
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.