pycom10g15960

UPF0420 protein C16orf58 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
19120242 .. 19123393
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15960.2

Sequence Viewer

Length: 1335 bp
ATGAAATTGTTGGAGAAGATAATGATGCAGAAGAAGGAGCCAGATAAAGCTCCAGCCCCTCCTGAGGTGCCGGCGTACTGGATCGAAACCTCCGAGTCGGTCTCCTACCGCTGCGAGTTTGACCCCAGCGGTCAACTCTCTGTGAAGATTCTTGATGACTCGAGGCCAGTGTTCCTTAAGGTCGCTGACTCATTCGTCAATAAATTTTTCCCCTCAGGATATCCATATAGTGTAAATGAAGGATATCTCAGATACACACAATTCCGGGCACTGCAGCACTTAACCAGTGCAGCCCTGTCAGTGCTTTCAACTCAGTCACTCCTATTTGCTGCAGGCTTGCGGCCAACCCCTGCACAAGCAACTGTTGTAAGTTGGGTTCTAAAGGATGGGATGCAGCACATGGGAAAGCTTATATGTAGCAATCTGGGCGCAAGAATGGATTCCGAGCCTAAATGTTGGAGAATTTTGGCTGATGTGCTCTATGACTTTGGCACTGGCTTGGAAGTTCTTTCTCCTTTGTGTCCACAGCTTTTTCTTCAAGTTGCAGGTTTAGGCAATTTTGCAAAGGGGATGGCAGTTGTTGCTGCGAGAGCAACAAGATTACCAATTTATTCGGCGTTTGCAAAAGAGGGCAATCTTAGTGATCTGTTTGCCAAAGGGGAGGCAATATCAACTGTGTTCAATGTCATTGGAATGGGAGCAGGGATCCAATTAGCATCTACTGTCTGTTCGTCTATGCAAGGAAAGATGGTTGTTGGGCCTCTTCTTTCAATGGTACATGTATACTGTGTCATTGAAGAAATGCGGGCAACTCCTATCAACACATTGAATCCACAGAGGACTGCAATGATTGTGGCTGATTTTCTGAAGACAGGAAAAGTATCAAGCCCGGCTGACCTGAGGTATCGGGAAGACCTCCTATTCCCTGGGCGACTCATAAAGGATGCCGGAAATGTAAGAGTGGGAAGGTCATTCCACAAGGTCATTAAGCCTTCAAAACTTAGTGAATTGAAAGAAATGTTCCCTGAAGAGAAGTTTCTTTTAAATCGTGGAAACAAAGGGGTTGACATGATATTGGAGCAAAATGCTACCGGCGAAGACGCATTGAGAGGGTGGCTTGTTGCTGGATACACTGCAGGTATAGAGAAGTCTTTTCATGTGCCGAGTCCGAGCGCACTGGAAGAGGCTTACGAGAAGATGAATGACGTATTTGGTCCATTTGTATTGGAACTGCAGGCCAAGGGGTGGCATACCGATCGATTTCTCGATGGAACAGGAAGCCGTTTTGCGTGGGGGTCGAATCTAGGTACAGATAATTCTTCTCAAAGATATTGA

Protein Analysis

445

Amino Acids

48.88

Weight (kDa)

8.37

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
Acc36I ACCTGC 2 cut(s) 536, 1127
AccB1I GGYRCC 1 cut(s) 67
AccB7I CCANNNNNTGG 1 cut(s) 1245
AccI GTMKAC 1 cut(s) 783
AciI CCGC 4 cut(s) 109, 129, 340, 805
AclWI GGATC 3 cut(s) 89, 700, 713
AcoI YGGCCR 1 cut(s) 341
AcsI RAATTY 2 cut(s) 203, 462
AcuI CTGAAG 2 cut(s) 887, 1047
AfaI GTAC 3 cut(s) 77, 777, 1309
AfiI CCNNNNNNNGG 2 cut(s) 64, 1245
AflII CTTAAG 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 778
AgsI TTSAA 8 cut(s) 309, 539, 682, 771, 797, 829, 996, 1012
AjnI CCWGG 1 cut(s) 925
AluBI AGCT 3 cut(s) 50, 409, 529
AluI AGCT 3 cut(s) 50, 409, 529
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 3 cut(s) 89, 700, 713
Ama87I CYCGRG 1 cut(s) 160
AoxI GGCC 4 cut(s) 164, 341, 758, 1236
ApeKI GCWGC 6 cut(s) 111, 274, 290, 329, 394, 584
ApoI RAATTY 2 cut(s) 203, 462
Asp700I GAANNNNTTC 1 cut(s) 439
AspLEI GCGC 2 cut(s) 431, 1175
AspS9I GGNCC 2 cut(s) 758, 1214
AsuC2I CCSGG 2 cut(s) 266, 890
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 1 cut(s) 1214
AxyI CCTNAGG 3 cut(s) 63, 214, 899
BaeGI GKGCMC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 705
BanI GGYRCC 1 cut(s) 67
BbsI GAAGAC 3 cut(s) 875, 918, 1104
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 6 cut(s) 98, 286, 302, 316, 406, 571
BccI CCATC 4 cut(s) 380, 565, 742, 1262
BceAI ACGGC 1 cut(s) 1266
BcgI CGANNNNNNTGC 2 cut(s) 1238, 1272
BciT130I CCWGG 1 cut(s) 927
BciVI GTATCC 1 cut(s) 1121
BcnI CCSGG 2 cut(s) 266, 890
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 1304
BfmI CTRYAG 4 cut(s) 272, 330, 1134, 1232
BfrI CTTAAG 1 cut(s) 176
BfuAI ACCTGC 2 cut(s) 536, 1127
BfuI GTATCC 1 cut(s) 1121
BisI GCNGC 7 cut(s) 112, 275, 291, 330, 341, 395, 585
BlsI GCNGC 7 cut(s) 113, 276, 292, 331, 342, 396, 586
Bme1390I CCNGG 3 cut(s) 266, 890, 927
Bme18I GGWCC 1 cut(s) 1214
BmeT110I CYCGRG 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 758, 1214
BmiI GGNNCC 3 cut(s) 39, 69, 707
BmrFI CCNGG 3 cut(s) 266, 890, 927
BmsI GCATC 4 cut(s) 15, 381, 725, 934
BpiI GAAGAC 3 cut(s) 875, 918, 1104
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 1 cut(s) 36
BpuMI CCSGG 2 cut(s) 266, 890
Bsa29I ATCGAT 1 cut(s) 1258
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 3 cut(s) 925, 926, 1239
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 1245
Bse118I RCCGGY 2 cut(s) 70, 1091
Bse1I ACTGG 5 cut(s) 83, 167, 285, 499, 1182
Bse21I CCTNAGG 3 cut(s) 63, 214, 899
Bse3DI GCAATG 1 cut(s) 852
BseBI CCWGG 1 cut(s) 927
BseCI ATCGAT 1 cut(s) 1258
BseDI CCNNGG 3 cut(s) 925, 926, 1239
BseGI GGATG 4 cut(s) 391, 396, 576, 949
BseLI CCNNNNNNNGG 2 cut(s) 64, 1245
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 5 cut(s) 54, 228, 262, 326, 890
BseNI ACTGG 5 cut(s) 83, 167, 285, 499, 1182
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 6 cut(s) 98, 286, 302, 316, 406, 571
BseYI CCCAGC 1 cut(s) 125
BsgI GTGCAG 2 cut(s) 309, 336
Bsh1285I CGRYCG 1 cut(s) 1258
BshFI GGCC 4 cut(s) 166, 343, 760, 1238
BshNI GGYRCC 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 1258
BsiEI CGRYCG 1 cut(s) 1258
BsiHKAI GWGCWC 1 cut(s) 480
BsiHKCI CYCGRG 1 cut(s) 160
BsiSI CCGG 5 cut(s) 71, 265, 890, 948, 1092
BslI CCNNNNNNNGG 2 cut(s) 64, 1245
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 4 cut(s) 166, 343, 760, 1238
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 271, 480
Bsp143I GATC 4 cut(s) 81, 643, 705, 1255
BspACI CCGC 4 cut(s) 109, 129, 340, 805
BspANI GGCC 4 cut(s) 166, 343, 760, 1238
BspCNI CTCAG 5 cut(s) 55, 227, 261, 325, 891
BspDI ATCGAT 1 cut(s) 1258
BspLI GGNNCC 3 cut(s) 39, 69, 707
BspMAI CTGCAG 4 cut(s) 276, 334, 1138, 1236
BspMI ACCTGC 2 cut(s) 536, 1127
BspPI GGATC 3 cut(s) 89, 700, 713
BspT107I GGYRCC 1 cut(s) 67
BspTI CTTAAG 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 852
BsrFI RCCGGY 2 cut(s) 70, 1091
BsrI ACTGG 5 cut(s) 83, 167, 285, 499, 1182
BssAI RCCGGY 2 cut(s) 70, 1091
BssECI CCNNGG 3 cut(s) 925, 926, 1239
BssMI GATC 4 cut(s) 81, 643, 705, 1255
BssNAI GTATAC 1 cut(s) 784
BssT1I CCWWGG 1 cut(s) 1239
Bst1107I GTATAC 1 cut(s) 784
Bst2UI CCWGG 1 cut(s) 927
Bst4CI ACNGT 4 cut(s) 364, 676, 724, 788
Bst6I CTCTTC 3 cut(s) 768, 1023, 1176
BstAFI CTTAAG 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 5 cut(s) 72, 334, 338, 807, 1236
BstDEI CTNAG 7 cut(s) 63, 214, 248, 312, 638, 899, 1001
BstF5I GGATG 4 cut(s) 391, 396, 576, 949
BstHHI GCGC 2 cut(s) 431, 1175
BstKTI GATC 4 cut(s) 84, 646, 708, 1258
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 81, 643, 705, 1255
BstMCI CGRYCG 1 cut(s) 1258
BstMWI GCNNNNNNNGC 3 cut(s) 426, 581, 590
BstNI CCWGG 1 cut(s) 927
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 3 cut(s) 264, 888, 925
BstSFI CTRYAG 4 cut(s) 272, 330, 1134, 1232
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 6 cut(s) 98, 286, 302, 316, 406, 571
BstV2I GAAGAC 3 cut(s) 875, 918, 1104
BstX2I RGATCY 1 cut(s) 705
BstYI RGATCY 1 cut(s) 705
BstZ17I GTATAC 1 cut(s) 784
Bsu15I ATCGAT 1 cut(s) 1258
Bsu36I CCTNAGG 3 cut(s) 63, 214, 899
BsuI GTATCC 1 cut(s) 1121
BsuRI GGCC 4 cut(s) 166, 343, 760, 1238
BsuTUI ATCGAT 1 cut(s) 1258
BtsCI GGATG 4 cut(s) 391, 396, 576, 949
BtsI GCAGTG 2 cut(s) 269, 1131
BtsIMutI CAGTG 7 cut(s) 174, 269, 292, 306, 492, 1131, 1175
BveI ACCTGC 2 cut(s) 536, 1127
Cac8I GCNNGC 5 cut(s) 72, 334, 338, 807, 1236
CfoI GCGC 2 cut(s) 431, 1175
Cfr10I RCCGGY 2 cut(s) 70, 1091
Cfr13I GGNCC 2 cut(s) 758, 1214
ClaI ATCGAT 1 cut(s) 1258
CseI GACGC 1 cut(s) 1109
Csp6I GTAC 3 cut(s) 76, 776, 1308
CspCI CAANNNNNGTGG 2 cut(s) 834, 869
CviAII CATG 4 cut(s) 400, 779, 1069, 1157
CviQI GTAC 3 cut(s) 76, 776, 1308
DdeI CTNAG 7 cut(s) 63, 214, 248, 312, 638, 899, 1001
DpnI GATC 4 cut(s) 83, 645, 707, 1257
DpnII GATC 4 cut(s) 81, 643, 705, 1255
DraI TTTAAA 1 cut(s) 1044
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 341
Eam1104I CTCTTC 3 cut(s) 768, 1023, 1176
EarI CTCTTC 3 cut(s) 768, 1023, 1176
Eco130I CCWWGG 1 cut(s) 1239
Eco31I GGTCTC 1 cut(s) 106
Eco32I GATATC 2 cut(s) 221, 245
Eco47I GGWCC 1 cut(s) 1214
Eco57I CTGAAG 2 cut(s) 887, 1047
Eco81I CCTNAGG 3 cut(s) 63, 214, 899
Eco88I CYCGRG 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 925
EcoRV GATATC 2 cut(s) 221, 245
EcoT14I CCWWGG 1 cut(s) 1239
ErhI CCWWGG 1 cut(s) 1239
FaeI CATG 4 cut(s) 403, 782, 1072, 1160
FatI CATG 4 cut(s) 399, 778, 1068, 1156
FauI CCCGC 1 cut(s) 798
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 7 cut(s) 112, 275, 291, 330, 341, 395, 585
FokI GGATG 4 cut(s) 398, 403, 583, 956
Fsp4HI GCNGC 7 cut(s) 112, 275, 291, 330, 341, 395, 585
FspBI CTAG 1 cut(s) 1304
GlaI GCGC 2 cut(s) 430, 1174
GluI GCNGC 7 cut(s) 112, 275, 291, 330, 341, 395, 585
GsaI CCCAGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 4 cut(s) 166, 343, 760, 1238
HapII CCGG 5 cut(s) 71, 265, 890, 948, 1092
HgaI GACGC 1 cut(s) 1109
HhaI GCGC 2 cut(s) 431, 1175
Hin1II CATG 4 cut(s) 403, 782, 1072, 1160
Hin6I GCGC 2 cut(s) 429, 1173
HinP1I GCGC 2 cut(s) 429, 1173
HincII GTYRAC 2 cut(s) 134, 1066
HindII GTYRAC 2 cut(s) 134, 1066
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 9 cut(s) 95, 148, 158, 188, 440, 829, 933, 1165, 1300
HpaII CCGG 5 cut(s) 71, 265, 890, 948, 1092
Hpy166II GTNNAC 4 cut(s) 134, 524, 784, 1066
Hpy188I TCNGA 5 cut(s) 94, 251, 445, 867, 1170
Hpy188III TCNNGA 5 cut(s) 62, 152, 216, 908, 1265
Hpy8I GTNNAC 4 cut(s) 134, 524, 784, 1066
HpyAV CCTTC 4 cut(s) 28, 233, 960, 1002
HpyCH4III ACNGT 4 cut(s) 364, 676, 724, 788
HpyCH4IV ACGT 1 cut(s) 1206
HpyF10VI GCNNNNNNNGC 3 cut(s) 426, 581, 590
HpyF3I CTNAG 7 cut(s) 63, 214, 248, 312, 638, 899, 1001
HpySE526I ACGT 1 cut(s) 1206
Hsp92II CATG 4 cut(s) 403, 782, 1072, 1160
HspAI GCGC 2 cut(s) 429, 1173
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
Kzo9I GATC 4 cut(s) 81, 643, 705, 1255
LmnI GCTCC 4 cut(s) 37, 55, 698, 1078
Lsp1109I GCAGC 6 cut(s) 98, 286, 302, 316, 406, 571
LweI GCATC 4 cut(s) 15, 381, 725, 934
MaeI CTAG 1 cut(s) 1304
MaeII ACGT 1 cut(s) 1206
MaeIII GTNAC 1 cut(s) 315
MalI GATC 4 cut(s) 83, 645, 707, 1257
MboI GATC 4 cut(s) 81, 643, 705, 1255
MflI RGATCY 1 cut(s) 705
MhlI GDGCHC 2 cut(s) 271, 480
MluCI AATT 9 cut(s) 5, 203, 260, 462, 556, 606, 710, 1007, 1315
MlyI GAGTC 5 cut(s) 104, 152, 182, 927, 1174
MmeI TCCRAC 1 cut(s) 437
MroNI GCCGGC 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 439
MseI TTAA 4 cut(s) 177, 281, 987, 1043
MslI CAYNNNNRTG 1 cut(s) 692
MspA1I CMGCKG 2 cut(s) 111, 129
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 5 cut(s) 71, 265, 890, 948, 1092
MspR9I CCNGG 3 cut(s) 266, 890, 927
MvaI CCWGG 1 cut(s) 927
MwoI GCNNNNNNNGC 3 cut(s) 426, 581, 590
NaeI GCCGGC 1 cut(s) 72
NciI CCSGG 2 cut(s) 266, 890
NdeII GATC 4 cut(s) 81, 643, 705, 1255
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 4 cut(s) 403, 782, 1072, 1160
NlaIV GGNNCC 3 cut(s) 39, 69, 707
NmeAIII GCCGAG 1 cut(s) 1188
NmuCI GTSAC 1 cut(s) 315
NspI RCATGY 1 cut(s) 782
PaeR7I CTCGAG 1 cut(s) 160
PasI CCCWGGG 1 cut(s) 926
PciI ACATGT 1 cut(s) 778
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdiI GCCGGC 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 439
PfeI GAWTC 4 cut(s) 148, 440, 829, 1300
PflMI CCANNNNNTGG 1 cut(s) 1245
PkrI GCNGC 7 cut(s) 113, 276, 292, 331, 342, 396, 586
Ple19I CGATCG 1 cut(s) 1258
PleI GAGTC 5 cut(s) 103, 152, 182, 927, 1173
PpsI GAGTC 5 cut(s) 103, 152, 182, 927, 1173
PscI ACATGT 1 cut(s) 778
Psp6I CCWGG 1 cut(s) 925
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 1 cut(s) 925
PspN4I GGNNCC 3 cut(s) 39, 69, 707
PspPI GGNCC 2 cut(s) 758, 1214
PspXI VCTCGAGB 1 cut(s) 160
PsrI GAACNNNNNNTAC 2 cut(s) 360, 392
PstI CTGCAG 4 cut(s) 276, 334, 1138, 1236
PsuI RGATCY 1 cut(s) 705
PvuI CGATCG 1 cut(s) 1258
RsaI GTAC 3 cut(s) 77, 777, 1309
RsaNI GTAC 3 cut(s) 76, 776, 1308
RseI CAYNNNNRTG 1 cut(s) 692
SaqAI TTAA 4 cut(s) 177, 281, 987, 1043
SatI GCNGC 7 cut(s) 112, 275, 291, 330, 341, 395, 585
Sau3AI GATC 4 cut(s) 81, 643, 705, 1255
Sau96I GGNCC 2 cut(s) 758, 1214
SchI GAGTC 5 cut(s) 104, 152, 182, 927, 1174
ScrFI CCNGG 3 cut(s) 266, 890, 927
SduI GDGCHC 2 cut(s) 271, 480
SfaNI GCATC 4 cut(s) 15, 381, 725, 934
SfcI CTRYAG 4 cut(s) 272, 330, 1134, 1232
Sfr274I CTCGAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 1214
SlaI CTCGAG 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 2 cut(s) 160, 176
SmoI CTYRAG 2 cut(s) 160, 176
Sse9I AATT 9 cut(s) 5, 203, 260, 462, 556, 606, 710, 1007, 1315
SsiI CCGC 4 cut(s) 109, 129, 340, 805
SspMI CTAG 1 cut(s) 1304
StyD4I CCNGG 3 cut(s) 264, 888, 925
StyI CCWWGG 1 cut(s) 1239
TaaI ACNGT 4 cut(s) 364, 676, 724, 788
TaiI ACGT 1 cut(s) 1209
TaqI TCGA 5 cut(s) 84, 161, 1258, 1266, 1298
TaqII GACCGA 1 cut(s) 88
TasI AATT 9 cut(s) 5, 203, 260, 462, 556, 606, 710, 1007, 1315
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 4 cut(s) 148, 440, 829, 1300
Tru1I TTAA 4 cut(s) 177, 281, 987, 1043
Tru9I TTAA 4 cut(s) 177, 281, 987, 1043
TscAI CASTG 7 cut(s) 174, 276, 292, 306, 499, 1138, 1182
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 6 cut(s) 111, 274, 290, 329, 394, 584
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 4 cut(s) 17, 252, 1145, 1214
TspRI CASTG 7 cut(s) 174, 276, 292, 306, 499, 1138, 1182
Van91I CCANNNNNTGG 1 cut(s) 1245
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 1214
XapI RAATTY 2 cut(s) 203, 462
XceI RCATGY 1 cut(s) 782
XhoI CTCGAG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 783
XmnI GAANNNNTTC 1 cut(s) 439
XspI CTAG 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.