RchiOBHm_Chr6g0288161

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009210
Physical Location & Seq
Reverse (-)
51443438 .. 51447078
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25854

Sequence Viewer

Length: 1449 bp
ATGCAAAAGCAAAATTGGTCAAATGGAGTACGACACCGTTTCCCATTGTTGCATTTTGGTTCCATATTTCTCAATTGCGCAGGCGGTGAGGCCCCTCCGATTCTGCCGCCGAATTTCTTCTCCCCTACTTTTGCTTGTTGGTTTAGTCCTCTTATGAACTTACTGGAGAGGATAAAGATGCAGAAGAAGGAGCCAGATAAAGCGCCGCCGCCGCCTGAGCTGCCGGTGTACTGGATCGAAACCTCTGAAGCAGTCTCGTACCGCTGTGAATTTGAACCCCACGGTCACCTCTCTGTGAAAATTCTTGATGACTCGAGGCCGGTAATCCGTAGGGTTGCAGATTCCTTCGTCAATAAGTTTTTCCCCTCAGGATATCCATATAGTGTCAATGAGGGATATCTCAGGTACACACAATTTCGGGCACTGCAACACTTCACCAGTGCAGCGCTTTCGGTGCTTTCAACTCAGTCACTCCTGTTTGCTGCAGGCTTGCGACCTACCCCTGCACAAGCAACTGTTGTTAGTTGGGTCCTAAAGGATGGGATGCAGCACATGGGTAAGCTCATATGTAGTAATTTGGGTGCAAGAATGGATTCAGAGCCTAAACGCTGGAGAATTTTGGCTGATGTACTCTATGACTTGGGCACTGGCTTAGAAGTTCTTTCTCCTTTATGTCCACAATTTTTTCTTGAAGTTGCAGGCCTAGGCAATTTTGCAAAGGGGATGGCAGTTGTTGCAGCAAGAGCAACAAGATTACCAATTTATTCCTCCTTTGCAAAAGAAGGCAATCTTAGTGACCTGTTTGCAAAAGGGGAGGCAATCTCAACTGTGTTCAATGTTCTTGGAATAGGGTTAGGAATCCAGTTAGCATCTACTATCTGTTCATCAATTCAAGGAAAGATGGTAGTTGGGCCTCTTCTTTCAATCGTACATGTATATTGTGTCATTGAAGAAATGCGGGCAACTCCTGTGAACACTCTGAATCCTCAGAGGACCGCAATGCTTGTGGCTGATTTCATCAAGACGGGAAAAGTATCAAGCCCAGCTGACCTAAGGTATAAAGAAGATCTTCTCTTTCCTGGGCGACTCATAGAAGATGCTGGAAATGTAAAAGTGGGAAAGTCCTTCCGCAAGGTTTTTAAGCCTTCAAAACTTGATGAATTGAAACAAATATTCCCAGACGAGAAGTTTCTTCTGAATCCTGGAAAAAAATCGGTTGACATGGTATTGGAGCACAGTGCTACCGGTGAAGATGCCTTGAGGGGGTGGCTTGTTGCCGGATTTGCAGCTGACATGGAGAAGTCTTCTCATGTTCCAACTTCAACTGCACTCGAAGAGGCTTACGAGAAGATGAATGATGTATTTGGTCCATTTGTTTCTGAACTTCAGGCCAAGGGGTGGCACACCGATCGTTTTCTTGACGGAACAGGAAGTCGTTTTGCTTGGTAG

Protein Analysis

482

Amino Acids

53.4

Weight (kDa)

8.52

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 110 - 342 5.6e-73 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 79
AccB7I CCANNNNNTGG 1 cut(s) 1398
AciI CCGC 9 cut(s) 84, 107, 206, 209, 212, 262, 958, 996, 1129
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 4 cut(s) 112, 269, 300, 615
AcuI CTGAAG 2 cut(s) 267, 1370
AfaI GTAC 6 cut(s) 30, 230, 260, 407, 630, 930
AfeI AGCGCT 1 cut(s) 447
AfiI CCNNNNNNNGG 2 cut(s) 1263, 1398
AflIII ACRYGT 1 cut(s) 931
AgeI ACCGGT 1 cut(s) 1244
AjnI CCWGG 2 cut(s) 1078, 1201
AluBI AGCT 4 cut(s) 220, 562, 1046, 1289
AluI AGCT 4 cut(s) 220, 562, 1046, 1289
Alw21I GWGCWC 1 cut(s) 1236
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 313
Aor51HI AGCGCT 1 cut(s) 447
AoxI GGCC 5 cut(s) 90, 317, 700, 911, 1389
ApeKI GCWGC 6 cut(s) 220, 443, 482, 547, 737, 1286
ApoI RAATTY 4 cut(s) 112, 269, 300, 615
AsiGI ACCGGT 1 cut(s) 1244
Asp700I GAANNNNTTC 3 cut(s) 116, 592, 1068
AspA2I CCTAGG 1 cut(s) 703
AspLEI GCGC 3 cut(s) 80, 205, 448
AspS9I GGNCC 5 cut(s) 91, 529, 911, 993, 1367
AsuHPI GGTGA 4 cut(s) 98, 278, 427, 1259
AvaI CYCGRG 1 cut(s) 313
AvaII GGWCC 3 cut(s) 529, 993, 1367
AvrII CCTAGG 1 cut(s) 703
AxyI CCTNAGG 2 cut(s) 367, 1052
BaeGI GKGCMC 2 cut(s) 424, 647
BbsI GAAGAC 1 cut(s) 1296
Bbv12I GWGCWC 1 cut(s) 1236
BbvI GCAGC 6 cut(s) 207, 455, 469, 559, 749, 1298
BccI CCATC 3 cut(s) 533, 718, 895
BcgI CGANNNNNNTGC 4 cut(s) 432, 466, 1391, 1425
BciT130I CCWGG 2 cut(s) 1080, 1203
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 1 cut(s) 704
BfmI CTRYAG 1 cut(s) 483
BfoI RGCGCY 2 cut(s) 206, 449
BglII AGATCT 1 cut(s) 1066
BlnI CCTAGG 1 cut(s) 703
Bme1390I CCNGG 2 cut(s) 1080, 1203
Bme18I GGWCC 3 cut(s) 529, 993, 1367
BmeT110I CYCGRG 1 cut(s) 313
BmgT120I GGNCC 5 cut(s) 91, 529, 911, 993, 1367
BmiI GGNNCC 4 cut(s) 61, 93, 192, 530
BmrFI CCNGG 2 cut(s) 1080, 1203
BmsI GCATC 5 cut(s) 168, 534, 878, 1087, 1243
BpiI GAAGAC 1 cut(s) 1296
BplI GAGNNNNNCTC 2 cut(s) 806, 838
BpmI CTGGAG 2 cut(s) 185, 631
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 1279
BsaJI CCNNGG 4 cut(s) 280, 703, 1079, 1392
BsaWI WCCGGW 1 cut(s) 1244
Bsc4I CCNNNNNNNGG 2 cut(s) 1263, 1398
Bse118I RCCGGY 3 cut(s) 223, 319, 1244
Bse1I ACTGG 5 cut(s) 168, 236, 438, 652, 862
Bse21I CCTNAGG 2 cut(s) 367, 1052
Bse3DI GCAATG 1 cut(s) 1005
BseBI CCWGG 2 cut(s) 1080, 1203
BseDI CCNNGG 4 cut(s) 280, 703, 1079, 1392
BseGI GGATG 3 cut(s) 544, 549, 729
BseLI CCNNNNNNNGG 2 cut(s) 1263, 1398
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 5 cut(s) 207, 381, 415, 479, 1001
BseNI ACTGG 5 cut(s) 168, 236, 438, 652, 862
BseSI GKGCMC 2 cut(s) 424, 647
BseXI GCAGC 6 cut(s) 207, 455, 469, 559, 749, 1298
BseYI CCCAGC 1 cut(s) 1042
BsgI GTGCAG 3 cut(s) 462, 489, 1311
Bsh1285I CGRYCG 1 cut(s) 1411
BshFI GGCC 5 cut(s) 92, 319, 702, 913, 1391
BshTI ACCGGT 1 cut(s) 1244
BsiEI CGRYCG 1 cut(s) 1411
BsiHKAI GWGCWC 1 cut(s) 1236
BsiHKCI CYCGRG 1 cut(s) 313
BsiSI CCGG 4 cut(s) 224, 320, 1245, 1278
BslI CCNNNNNNNGG 2 cut(s) 1263, 1398
BsmAI GTCTC 1 cut(s) 259
BsnI GGCC 5 cut(s) 92, 319, 702, 913, 1391
BsoBI CYCGRG 1 cut(s) 313
Bsp1286I GDGCHC 3 cut(s) 424, 647, 1236
Bsp143I GATC 3 cut(s) 234, 1066, 1408
BspACI CCGC 9 cut(s) 84, 107, 206, 209, 212, 262, 958, 996, 1129
BspANI GGCC 5 cut(s) 92, 319, 702, 913, 1391
BspCNI CTCAG 5 cut(s) 208, 380, 414, 478, 1000
BspLI GGNNCC 4 cut(s) 61, 93, 192, 530
BspMAI CTGCAG 1 cut(s) 487
BspPI GGATC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 1005
BsrFI RCCGGY 3 cut(s) 223, 319, 1244
BsrI ACTGG 5 cut(s) 168, 236, 438, 652, 862
BssAI RCCGGY 3 cut(s) 223, 319, 1244
BssECI CCNNGG 4 cut(s) 280, 703, 1079, 1392
BssMI GATC 3 cut(s) 234, 1066, 1408
BssT1I CCWWGG 2 cut(s) 703, 1392
Bst2UI CCWGG 2 cut(s) 1080, 1203
Bst4CI ACNGT 5 cut(s) 38, 284, 517, 829, 1238
Bst6I CTCTTC 2 cut(s) 921, 1329
BstAPI GCANNNNNTGC 1 cut(s) 734
BstC8I GCNNGC 5 cut(s) 82, 487, 491, 700, 960
BstDEI CTNAG 8 cut(s) 216, 367, 401, 465, 652, 791, 987, 1052
BstDSI CCRYGG 1 cut(s) 280
BstEII GGTNACC 1 cut(s) 284
BstF5I GGATG 3 cut(s) 544, 549, 729
BstH2I RGCGCY 2 cut(s) 206, 449
BstHHI GCGC 3 cut(s) 80, 205, 448
BstKTI GATC 3 cut(s) 237, 1069, 1411
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 3 cut(s) 234, 1066, 1408
BstMCI CGRYCG 1 cut(s) 1411
BstMWI GCNNNNNNNGC 7 cut(s) 211, 217, 220, 454, 734, 743, 1283
BstNI CCWGG 2 cut(s) 1080, 1203
BstNSI RCATGY 1 cut(s) 935
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 2 cut(s) 1078, 1201
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 2 cut(s) 424, 647
BstV1I GCAGC 6 cut(s) 207, 455, 469, 559, 749, 1298
BstV2I GAAGAC 1 cut(s) 1296
BstX2I RGATCY 1 cut(s) 1066
BstYI RGATCY 1 cut(s) 1066
Bsu36I CCTNAGG 2 cut(s) 367, 1052
BsuRI GGCC 5 cut(s) 92, 319, 702, 913, 1391
BtgI CCRYGG 1 cut(s) 280
BtsCI GGATG 3 cut(s) 544, 549, 729
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 4 cut(s) 422, 445, 645, 1243
Cac8I GCNNGC 5 cut(s) 82, 487, 491, 700, 960
CfoI GCGC 3 cut(s) 80, 205, 448
Cfr10I RCCGGY 3 cut(s) 223, 319, 1244
Cfr13I GGNCC 5 cut(s) 91, 529, 911, 993, 1367
Csp6I GTAC 6 cut(s) 29, 229, 259, 406, 629, 929
CspAI ACCGGT 1 cut(s) 1244
CspCI CAANNNNNGTGG 2 cut(s) 987, 1022
CviAII CATG 5 cut(s) 553, 932, 1222, 1294, 1310
CviQI GTAC 6 cut(s) 29, 229, 259, 406, 629, 929
DdeI CTNAG 8 cut(s) 216, 367, 401, 465, 652, 791, 987, 1052
DpnI GATC 3 cut(s) 236, 1068, 1410
DpnII GATC 3 cut(s) 234, 1066, 1408
Eam1104I CTCTTC 2 cut(s) 921, 1329
EarI CTCTTC 2 cut(s) 921, 1329
Eco130I CCWWGG 2 cut(s) 703, 1392
Eco147I AGGCCT 1 cut(s) 702
Eco32I GATATC 2 cut(s) 374, 398
Eco47I GGWCC 3 cut(s) 529, 993, 1367
Eco47III AGCGCT 1 cut(s) 447
Eco57I CTGAAG 2 cut(s) 267, 1370
Eco81I CCTNAGG 2 cut(s) 367, 1052
Eco88I CYCGRG 1 cut(s) 313
Eco91I GGTNACC 1 cut(s) 284
EcoO109I RGGNCCY 2 cut(s) 91, 529
EcoO65I GGTNACC 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 1078, 1201
EcoRV GATATC 2 cut(s) 374, 398
EcoT14I CCWWGG 2 cut(s) 703, 1392
ErhI CCWWGG 2 cut(s) 703, 1392
FaeI CATG 5 cut(s) 556, 935, 1225, 1297, 1313
FalI AAGNNNNNCTT 4 cut(s) 774, 806, 1053, 1085
FatI CATG 5 cut(s) 552, 931, 1221, 1293, 1309
FauI CCCGC 1 cut(s) 951
FauNDI CATATG 1 cut(s) 566
FokI GGATG 3 cut(s) 551, 556, 736
FspBI CTAG 1 cut(s) 704
FspI TGCGCA 1 cut(s) 79
GlaI GCGC 3 cut(s) 79, 204, 447
GsaI CCCAGC 1 cut(s) 1046
GsuI CTGGAG 2 cut(s) 185, 631
HaeII RGCGCY 2 cut(s) 206, 449
HaeIII GGCC 5 cut(s) 92, 319, 702, 913, 1391
HapII CCGG 4 cut(s) 224, 320, 1245, 1278
HhaI GCGC 3 cut(s) 80, 205, 448
Hin1II CATG 5 cut(s) 556, 935, 1225, 1297, 1313
Hin6I GCGC 3 cut(s) 78, 203, 446
HinP1I GCGC 3 cut(s) 78, 203, 446
HincII GTYRAC 1 cut(s) 1219
HindII GTYRAC 1 cut(s) 1219
HinfI GANTC 8 cut(s) 100, 311, 341, 593, 858, 982, 1086, 1198
HpaII CCGG 4 cut(s) 224, 320, 1245, 1278
HphI GGTGA 4 cut(s) 98, 278, 427, 1259
Hpy166II GTNNAC 5 cut(s) 229, 408, 677, 973, 1219
Hpy188I TCNGA 7 cut(s) 99, 247, 598, 981, 990, 1197, 1381
Hpy188III TCNNGA 5 cut(s) 305, 369, 689, 1021, 1418
Hpy8I GTNNAC 5 cut(s) 229, 408, 677, 973, 1219
HpyAV CCTTC 5 cut(s) 181, 355, 776, 1135, 1155
HpyCH4III ACNGT 5 cut(s) 38, 284, 517, 829, 1238
HpyF10VI GCNNNNNNNGC 7 cut(s) 211, 217, 220, 454, 734, 743, 1283
HpyF3I CTNAG 8 cut(s) 216, 367, 401, 465, 652, 791, 987, 1052
Hsp92II CATG 5 cut(s) 556, 935, 1225, 1297, 1313
HspAI GCGC 3 cut(s) 78, 203, 446
Kzo9I GATC 3 cut(s) 234, 1066, 1408
LmnI GCTCC 2 cut(s) 190, 1231
Lsp1109I GCAGC 6 cut(s) 207, 455, 469, 559, 749, 1298
LweI GCATC 5 cut(s) 168, 534, 878, 1087, 1243
MaeI CTAG 1 cut(s) 704
MaeIII GTNAC 3 cut(s) 284, 468, 794
MalI GATC 3 cut(s) 236, 1068, 1410
MboI GATC 3 cut(s) 234, 1066, 1408
MfeI CAATTG 1 cut(s) 73
MflI RGATCY 1 cut(s) 1066
MhlI GDGCHC 3 cut(s) 424, 647, 1236
MlyI GAGTC 2 cut(s) 305, 1080
MmeI TCCRAC 1 cut(s) 1340
MroXI GAANNNNTTC 3 cut(s) 116, 592, 1068
MseI TTAA 1 cut(s) 1140
MspA1I CMGCKG 3 cut(s) 264, 1046, 1289
MspI CCGG 4 cut(s) 224, 320, 1245, 1278
MspR9I CCNGG 2 cut(s) 1080, 1203
MunI CAATTG 1 cut(s) 73
MvaI CCWGG 2 cut(s) 1080, 1203
MwoI GCNNNNNNNGC 7 cut(s) 211, 217, 220, 454, 734, 743, 1283
NdeI CATATG 1 cut(s) 566
NdeII GATC 3 cut(s) 234, 1066, 1408
NlaIII CATG 5 cut(s) 556, 935, 1225, 1297, 1313
NlaIV GGNNCC 4 cut(s) 61, 93, 192, 530
NmuCI GTSAC 3 cut(s) 284, 468, 794
NsbI TGCGCA 1 cut(s) 79
NspI RCATGY 1 cut(s) 935
PaeR7I CTCGAG 1 cut(s) 313
PceI AGGCCT 1 cut(s) 702
PciI ACATGT 1 cut(s) 931
PdmI GAANNNNTTC 3 cut(s) 116, 592, 1068
PfeI GAWTC 6 cut(s) 100, 341, 593, 858, 982, 1198
PflMI CCANNNNNTGG 1 cut(s) 1398
PfoI TCCNGGA 1 cut(s) 1201
PinAI ACCGGT 1 cut(s) 1244
Ple19I CGATCG 1 cut(s) 1411
PleI GAGTC 2 cut(s) 305, 1080
PpsI GAGTC 2 cut(s) 305, 1080
PpuMI RGGWCCY 1 cut(s) 529
PscI ACATGT 1 cut(s) 931
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 1078, 1201
PspEI GGTNACC 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 1042
PspGI CCWGG 2 cut(s) 1078, 1201
PspN4I GGNNCC 4 cut(s) 61, 93, 192, 530
PspPI GGNCC 5 cut(s) 91, 529, 911, 993, 1367
PspPPI RGGWCCY 1 cut(s) 529
PspXI VCTCGAGB 1 cut(s) 313
PstI CTGCAG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 1066
PvuI CGATCG 1 cut(s) 1411
PvuII CAGCTG 2 cut(s) 1046, 1289
RsaI GTAC 6 cut(s) 30, 230, 260, 407, 630, 930
RsaNI GTAC 6 cut(s) 29, 229, 259, 406, 629, 929
SaqAI TTAA 1 cut(s) 1140
Sau3AI GATC 3 cut(s) 234, 1066, 1408
Sau96I GGNCC 5 cut(s) 91, 529, 911, 993, 1367
SchI GAGTC 2 cut(s) 305, 1080
ScrFI CCNGG 2 cut(s) 1080, 1203
SduI GDGCHC 3 cut(s) 424, 647, 1236
SfaNI GCATC 5 cut(s) 168, 534, 878, 1087, 1243
SfcI CTRYAG 1 cut(s) 483
Sfr274I CTCGAG 1 cut(s) 313
SinI GGWCC 3 cut(s) 529, 993, 1367
SlaI CTCGAG 1 cut(s) 313
SmlI CTYRAG 2 cut(s) 313, 1258
SmoI CTYRAG 2 cut(s) 313, 1258
SseBI AGGCCT 1 cut(s) 702
SsiI CCGC 9 cut(s) 84, 107, 206, 209, 212, 262, 958, 996, 1129
SspI AATATT 1 cut(s) 1173
SspMI CTAG 1 cut(s) 704
StuI AGGCCT 1 cut(s) 702
StyD4I CCNGG 2 cut(s) 1078, 1201
StyI CCWWGG 2 cut(s) 703, 1392
TaaI ACNGT 5 cut(s) 38, 284, 517, 829, 1238
TaqI TCGA 3 cut(s) 237, 314, 1332
TatI WGTACW 2 cut(s) 228, 628
TauI GCSGC 4 cut(s) 109, 208, 211, 214
TfiI GAWTC 6 cut(s) 100, 341, 593, 858, 982, 1198
Tru1I TTAA 1 cut(s) 1140
Tru9I TTAA 1 cut(s) 1140
TscAI CASTG 4 cut(s) 429, 445, 652, 1243
TseFI GTSAC 3 cut(s) 284, 468, 794
TseI GCWGC 6 cut(s) 220, 443, 482, 547, 737, 1286
Tsp45I GTSAC 3 cut(s) 284, 468, 794
TspDTI ATGAA 5 cut(s) 170, 873, 1006, 1173, 1367
TspGWI ACGGA 2 cut(s) 317, 1437
TspRI CASTG 4 cut(s) 429, 445, 652, 1243
Van91I CCANNNNNTGG 1 cut(s) 1398
VpaK11BI GGWCC 3 cut(s) 529, 993, 1367
XapI RAATTY 4 cut(s) 112, 269, 300, 615
XceI RCATGY 1 cut(s) 935
XhoI CTCGAG 1 cut(s) 313
XmaJI CCTAGG 1 cut(s) 703
XmnI GAANNNNTTC 3 cut(s) 116, 592, 1068
XspI CTAG 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.