Rroxscaffold_7G00180430

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009210
Physical Location & Seq
Forward (+)
19810968 .. 19814448
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180430.1

Sequence Viewer

Length: 1203 bp
ATGAACTTACTGGAGAAGATAAAGATGCAGAAGAAGGAGCCAGATAAAGCGCCGCCGCCGCCTGAGCTGCCGGCGTACTGGATCGAAACCTCTGAAGCAGTCTCATACCGCTGTGAATTTGAACCCCACCACGGTCACCTCTCTGTGAAAATTCTTGATGACTCGAGGCCAGTAATCCGTAGGGTTGCAGATTCCTTCGTCAATAAGTTTTTCCCCTCAGGATATCCATATAGTGTCAATGAGGGATATCTCAGGTACACACAATTTCGGGCACTGCAACACTTCACCAGTGCAGCGCTTTCGGTGCTTTCAACTCAGTCACTCCTGTTTGCTGCAGGCTTGCGACCTACCCCTGCACAAGCAACTGTTGTTAGTTGGGTCCTAAAGGATGGGATGCAGCACATGGGTAAGCTCATATGTAGTAATTTGGGTGCAAGAATGGATTCAGAGCCTAAACGCTGGAGAATTTTGGCTGATGTACTCTATGACTTGGGCACTGGCTTAGAAGTTCTTTCTCCGTTATGTCCACAATTTTTTCTTCAAGTTGCAGGCCTAGGCAATTTTGCAAAGGGAATGGCAGTTGTTGCAGCAAGAGCAACAAGGTTACCAATTTATTCCTCCTTTGCAAAAGAAGGCAATCTTAGTGACCTGTTTGCAAAAGGGGAGGCAATATCAACTGTGTTCAATGTTCTTGGAATAGGGTTAGGAATCCAGTTAGCATCTACTATCTGTTCATCAATTCAAGGAAAGATGGTAGTTGGGCCTCTTCTTTCAATCGTACATGTATATTGTGTCATTGAAGAAATGCGGGCAACTCCTGTGAACACTCTGAATCCTCAGAGGACCGCAATGCTTGTGGCTGATTTCATCAAGACGGGAAAAGTATCAAGCCCAGCTGACCTAAGGTATAAAGAAGATCTTCTCTTTCCTGGGCGACTCATAGAAGATGCTGGAAATGTAAAAGTGGGAAAGTCCTTCCGCAAGGTTTTTAAGCCTTCAAAACTTGATGACTTGAAACAAATATTCCCAGACGAGAAGTTTCTTCTGAATCCTGGAAAAAAATCAGTTGACATGGTATTGGAGCACAGTGCTACCGGTGAAGATGCCTTGAGGGGTGGCTTGTTGCCGGATTTGCGGCTGACATGGAGAAGTCTTTTCATGTTCCAACTTCAAGTGCACTCGAAGAGGCTTACGAGAAGATGA

Protein Analysis

400

Amino Acids

44.46

Weight (kDa)

9.4

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 60 - 292 2.9e-73 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 53, 56, 59, 109, 808, 846, 979, 1135
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 3 cut(s) 116, 150, 465
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 4 cut(s) 77, 257, 480, 780
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 781
AgeI ACCGGT 1 cut(s) 1094
AjnI CCWGG 2 cut(s) 928, 1051
AluBI AGCT 3 cut(s) 67, 412, 896
AluI AGCT 3 cut(s) 67, 412, 896
Alw21I GWGCWC 2 cut(s) 1086, 1179
Alw26I GTCTC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 1175
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 163
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 3 cut(s) 167, 550, 761
ApaLI GTGCAC 1 cut(s) 1175
ApeKI GCWGC 5 cut(s) 67, 293, 332, 397, 587
ApoI RAATTY 3 cut(s) 116, 150, 465
AsiGI ACCGGT 1 cut(s) 1094
Asp700I GAANNNNTTC 2 cut(s) 442, 918
AspA2I CCTAGG 1 cut(s) 553
AspLEI GCGC 2 cut(s) 52, 298
AspS9I GGNCC 3 cut(s) 379, 761, 843
AsuHPI GGTGA 3 cut(s) 128, 277, 1109
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 2 cut(s) 379, 843
AvrII CCTAGG 1 cut(s) 553
AxyI CCTNAGG 2 cut(s) 217, 902
BaeGI GKGCMC 3 cut(s) 274, 497, 1179
Bbv12I GWGCWC 2 cut(s) 1086, 1179
BbvI GCAGC 5 cut(s) 54, 305, 319, 409, 599
BccI CCATC 2 cut(s) 383, 745
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BciT130I CCWGG 2 cut(s) 930, 1053
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 2 cut(s) 53, 299
BglII AGATCT 1 cut(s) 916
BisI GCNGC 9 cut(s) 53, 56, 59, 68, 294, 333, 398, 588, 1136
BlnI CCTAGG 1 cut(s) 553
BlsI GCNGC 9 cut(s) 54, 57, 60, 69, 295, 334, 399, 589, 1137
Bme1390I CCNGG 2 cut(s) 930, 1053
Bme18I GGWCC 2 cut(s) 379, 843
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 379, 761, 843
BmiI GGNNCC 2 cut(s) 39, 380
BmrFI CCNGG 2 cut(s) 930, 1053
BmsI GCATC 5 cut(s) 15, 384, 728, 937, 1093
BpmI CTGGAG 2 cut(s) 32, 481
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 1129
BsaJI CCNNGG 3 cut(s) 130, 553, 929
BsaWI WCCGGW 1 cut(s) 1094
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 2 cut(s) 70, 1094
Bse1I ACTGG 6 cut(s) 15, 83, 170, 288, 502, 712
Bse21I CCTNAGG 2 cut(s) 217, 902
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 2 cut(s) 930, 1053
BseDI CCNNGG 3 cut(s) 130, 553, 929
BseGI GGATG 2 cut(s) 394, 399
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 5 cut(s) 54, 231, 265, 329, 851
BseNI ACTGG 6 cut(s) 15, 83, 170, 288, 502, 712
BseSI GKGCMC 3 cut(s) 274, 497, 1179
BseXI GCAGC 5 cut(s) 54, 305, 319, 409, 599
BseYI CCCAGC 1 cut(s) 892
BsgI GTGCAG 2 cut(s) 312, 339
BshFI GGCC 3 cut(s) 169, 552, 763
BshTI ACCGGT 1 cut(s) 1094
BsiHKAI GWGCWC 2 cut(s) 1086, 1179
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 3 cut(s) 71, 1095, 1127
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 3 cut(s) 169, 552, 763
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 4 cut(s) 274, 497, 1086, 1179
Bsp143I GATC 2 cut(s) 81, 916
BspACI CCGC 8 cut(s) 53, 56, 59, 109, 808, 846, 979, 1135
BspANI GGCC 3 cut(s) 169, 552, 763
BspCNI CTCAG 5 cut(s) 55, 230, 264, 328, 850
BspLI GGNNCC 2 cut(s) 39, 380
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 855
BsrFI RCCGGY 2 cut(s) 70, 1094
BsrI ACTGG 6 cut(s) 15, 83, 170, 288, 502, 712
BssAI RCCGGY 2 cut(s) 70, 1094
BssECI CCNNGG 3 cut(s) 130, 553, 929
BssMI GATC 2 cut(s) 81, 916
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 2 cut(s) 930, 1053
Bst4CI ACNGT 4 cut(s) 134, 367, 679, 1088
Bst6I CTCTTC 2 cut(s) 771, 1178
BstAPI GCANNNNNTGC 1 cut(s) 584
BstC8I GCNNGC 5 cut(s) 72, 337, 341, 550, 810
BstDEI CTNAG 8 cut(s) 63, 217, 251, 315, 502, 641, 837, 902
BstDSI CCRYGG 1 cut(s) 130
BstEII GGTNACC 2 cut(s) 134, 603
BstF5I GGATG 2 cut(s) 394, 399
BstH2I RGCGCY 2 cut(s) 53, 299
BstHHI GCGC 2 cut(s) 52, 298
BstKTI GATC 2 cut(s) 84, 919
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 81, 916
BstMWI GCNNNNNNNGC 7 cut(s) 58, 64, 67, 304, 584, 593, 1132
BstNI CCWGG 2 cut(s) 930, 1053
BstNSI RCATGY 1 cut(s) 785
BstPI GGTNACC 2 cut(s) 134, 603
BstSCI CCNGG 2 cut(s) 928, 1051
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 3 cut(s) 274, 497, 1179
BstV1I GCAGC 5 cut(s) 54, 305, 319, 409, 599
BstX2I RGATCY 1 cut(s) 916
BstYI RGATCY 1 cut(s) 916
Bsu36I CCTNAGG 2 cut(s) 217, 902
BsuRI GGCC 3 cut(s) 169, 552, 763
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 2 cut(s) 394, 399
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 4 cut(s) 272, 295, 495, 1093
Cac8I GCNNGC 5 cut(s) 72, 337, 341, 550, 810
CfoI GCGC 2 cut(s) 52, 298
Cfr10I RCCGGY 2 cut(s) 70, 1094
Cfr13I GGNCC 3 cut(s) 379, 761, 843
Csp6I GTAC 4 cut(s) 76, 256, 479, 779
CspAI ACCGGT 1 cut(s) 1094
CspCI CAANNNNNGTGG 2 cut(s) 837, 872
CviAII CATG 5 cut(s) 403, 782, 1072, 1143, 1159
CviQI GTAC 4 cut(s) 76, 256, 479, 779
DdeI CTNAG 8 cut(s) 63, 217, 251, 315, 502, 641, 837, 902
DpnI GATC 2 cut(s) 83, 918
DpnII GATC 2 cut(s) 81, 916
Eam1104I CTCTTC 2 cut(s) 771, 1178
EarI CTCTTC 2 cut(s) 771, 1178
Eco130I CCWWGG 1 cut(s) 553
Eco147I AGGCCT 1 cut(s) 552
Eco32I GATATC 2 cut(s) 224, 248
Eco47I GGWCC 2 cut(s) 379, 843
Eco47III AGCGCT 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 114
Eco81I CCTNAGG 2 cut(s) 217, 902
Eco88I CYCGRG 1 cut(s) 163
Eco91I GGTNACC 2 cut(s) 134, 603
EcoO109I RGGNCCY 1 cut(s) 379
EcoO65I GGTNACC 2 cut(s) 134, 603
EcoRII CCWGG 2 cut(s) 928, 1051
EcoRV GATATC 2 cut(s) 224, 248
EcoT14I CCWWGG 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 5 cut(s) 406, 785, 1075, 1146, 1162
FalI AAGNNNNNCTT 4 cut(s) 624, 656, 903, 935
FatI CATG 5 cut(s) 402, 781, 1071, 1142, 1158
FauI CCCGC 1 cut(s) 801
FauNDI CATATG 1 cut(s) 416
Fnu4HI GCNGC 9 cut(s) 53, 56, 59, 68, 294, 333, 398, 588, 1136
FokI GGATG 2 cut(s) 401, 406
Fsp4HI GCNGC 9 cut(s) 53, 56, 59, 68, 294, 333, 398, 588, 1136
FspBI CTAG 1 cut(s) 554
GlaI GCGC 2 cut(s) 51, 297
GluI GCNGC 9 cut(s) 53, 56, 59, 68, 294, 333, 398, 588, 1136
GsaI CCCAGC 1 cut(s) 896
GsuI CTGGAG 2 cut(s) 32, 481
HaeII RGCGCY 2 cut(s) 53, 299
HaeIII GGCC 3 cut(s) 169, 552, 763
HapII CCGG 3 cut(s) 71, 1095, 1127
HhaI GCGC 2 cut(s) 52, 298
Hin1II CATG 5 cut(s) 406, 785, 1075, 1146, 1162
Hin6I GCGC 2 cut(s) 50, 296
HinP1I GCGC 2 cut(s) 50, 296
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 7 cut(s) 161, 191, 443, 708, 832, 936, 1048
HpaII CCGG 3 cut(s) 71, 1095, 1127
HphI GGTGA 3 cut(s) 128, 277, 1109
Hpy166II GTNNAC 5 cut(s) 258, 527, 823, 1069, 1177
Hpy188I TCNGA 5 cut(s) 94, 448, 831, 840, 1047
Hpy188III TCNNGA 3 cut(s) 155, 219, 871
Hpy8I GTNNAC 5 cut(s) 258, 527, 823, 1069, 1177
HpyAV CCTTC 5 cut(s) 28, 205, 626, 985, 1005
HpyCH4III ACNGT 4 cut(s) 134, 367, 679, 1088
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 64, 67, 304, 584, 593, 1132
HpyF3I CTNAG 8 cut(s) 63, 217, 251, 315, 502, 641, 837, 902
Hsp92II CATG 5 cut(s) 406, 785, 1075, 1146, 1162
HspAI GCGC 2 cut(s) 50, 296
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 81, 916
LmnI GCTCC 2 cut(s) 37, 1081
Lsp1109I GCAGC 5 cut(s) 54, 305, 319, 409, 599
LweI GCATC 5 cut(s) 15, 384, 728, 937, 1093
MaeI CTAG 1 cut(s) 554
MaeIII GTNAC 4 cut(s) 134, 318, 603, 644
MalI GATC 2 cut(s) 83, 918
MboI GATC 2 cut(s) 81, 916
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 4 cut(s) 274, 497, 1086, 1179
MluCI AATT 9 cut(s) 116, 150, 263, 424, 465, 530, 559, 609, 738
MlyI GAGTC 2 cut(s) 155, 930
MmeI TCCRAC 1 cut(s) 1189
MroNI GCCGGC 1 cut(s) 70
MroXI GAANNNNTTC 2 cut(s) 442, 918
MseI TTAA 1 cut(s) 990
MspA1I CMGCKG 2 cut(s) 111, 896
MspI CCGG 3 cut(s) 71, 1095, 1127
MspR9I CCNGG 2 cut(s) 930, 1053
MvaI CCWGG 2 cut(s) 930, 1053
MwoI GCNNNNNNNGC 7 cut(s) 58, 64, 67, 304, 584, 593, 1132
NaeI GCCGGC 1 cut(s) 72
NdeI CATATG 1 cut(s) 416
NdeII GATC 2 cut(s) 81, 916
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 5 cut(s) 406, 785, 1075, 1146, 1162
NlaIV GGNNCC 2 cut(s) 39, 380
NmuCI GTSAC 3 cut(s) 134, 318, 644
NspI RCATGY 1 cut(s) 785
PaeR7I CTCGAG 1 cut(s) 163
PceI AGGCCT 1 cut(s) 552
PciI ACATGT 1 cut(s) 781
PdiI GCCGGC 1 cut(s) 72
PdmI GAANNNNTTC 2 cut(s) 442, 918
PfeI GAWTC 5 cut(s) 191, 443, 708, 832, 1048
PfoI TCCNGGA 1 cut(s) 1051
PinAI ACCGGT 1 cut(s) 1094
PkrI GCNGC 9 cut(s) 54, 57, 60, 69, 295, 334, 399, 589, 1137
PleI GAGTC 2 cut(s) 155, 930
PpsI GAGTC 2 cut(s) 155, 930
PpuMI RGGWCCY 1 cut(s) 379
PscI ACATGT 1 cut(s) 781
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 2 cut(s) 928, 1051
PspEI GGTNACC 2 cut(s) 134, 603
PspFI CCCAGC 1 cut(s) 892
PspGI CCWGG 2 cut(s) 928, 1051
PspN4I GGNNCC 2 cut(s) 39, 380
PspPI GGNCC 3 cut(s) 379, 761, 843
PspPPI RGGWCCY 1 cut(s) 379
PspXI VCTCGAGB 1 cut(s) 163
PstI CTGCAG 1 cut(s) 337
PsuI RGATCY 1 cut(s) 916
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 4 cut(s) 77, 257, 480, 780
RsaNI GTAC 4 cut(s) 76, 256, 479, 779
SaqAI TTAA 1 cut(s) 990
SatI GCNGC 9 cut(s) 53, 56, 59, 68, 294, 333, 398, 588, 1136
Sau3AI GATC 2 cut(s) 81, 916
Sau96I GGNCC 3 cut(s) 379, 761, 843
SchI GAGTC 2 cut(s) 155, 930
ScrFI CCNGG 2 cut(s) 930, 1053
SduI GDGCHC 4 cut(s) 274, 497, 1086, 1179
SfaNI GCATC 5 cut(s) 15, 384, 728, 937, 1093
SfcI CTRYAG 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 163
SinI GGWCC 2 cut(s) 379, 843
SlaI CTCGAG 1 cut(s) 163
SmlI CTYRAG 2 cut(s) 163, 1108
SmoI CTYRAG 2 cut(s) 163, 1108
Sse9I AATT 9 cut(s) 116, 150, 263, 424, 465, 530, 559, 609, 738
SseBI AGGCCT 1 cut(s) 552
SsiI CCGC 8 cut(s) 53, 56, 59, 109, 808, 846, 979, 1135
SspI AATATT 1 cut(s) 1023
SspMI CTAG 1 cut(s) 554
StuI AGGCCT 1 cut(s) 552
StyD4I CCNGG 2 cut(s) 928, 1051
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 4 cut(s) 134, 367, 679, 1088
TaqI TCGA 3 cut(s) 84, 164, 1181
TasI AATT 9 cut(s) 116, 150, 263, 424, 465, 530, 559, 609, 738
TatI WGTACW 1 cut(s) 478
TauI GCSGC 4 cut(s) 55, 58, 61, 1138
TfiI GAWTC 5 cut(s) 191, 443, 708, 832, 1048
Tru1I TTAA 1 cut(s) 990
Tru9I TTAA 1 cut(s) 990
TscAI CASTG 4 cut(s) 279, 295, 502, 1093
TseFI GTSAC 3 cut(s) 134, 318, 644
TseI GCWGC 5 cut(s) 67, 293, 332, 397, 587
Tsp45I GTSAC 3 cut(s) 134, 318, 644
TspDTI ATGAA 4 cut(s) 17, 723, 856, 1147
TspGWI ACGGA 2 cut(s) 167, 507
TspRI CASTG 4 cut(s) 279, 295, 502, 1093
VneI GTGCAC 1 cut(s) 1175
VpaK11BI GGWCC 2 cut(s) 379, 843
XapI RAATTY 3 cut(s) 116, 150, 465
XceI RCATGY 1 cut(s) 785
XhoI CTCGAG 1 cut(s) 163
XmaJI CCTAGG 1 cut(s) 553
XmnI GAANNNNTTC 2 cut(s) 442, 918
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.