Prupe.8G224000_v2.0.a1

UPF0420 protein C16orf58 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
20209396 .. 20213267
3872 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G224000.3

Sequence Viewer

Length: 1338 bp
ATGAACTTGTTGGAGAAGATAAAGATGCAGAAGAAGGAACCAGACAAAGTTCCAACCCATGAGGTGCCGGTGTTCTGGATCGAAACCTCTGAATCAGTCTCATACCGCTGCGAGTTTGACCCCAAGGGTCAACTCACTGTGAAGCTTCTTGATGACTCAAGGCCAGTATTCAATAAGATGGCTGACTCGTTTGTCAGTAAATTTTTCCCCTCAGGATATCCATATAGTGTGAATGAAGGATATCTCAGATACACACAATTCCGGGCACTGCAGCACTTCACCAGTGCTGCCCTGTCAGTGCTTTCAACTCAGTCCCTCCTGTTTGCTGCAGGCTTGCGACCAACCCCTGCCCAAGCAACTGTTGTAAGCTGGGTTCTAAAGGATGGGATGCAGCACATGGGAAAGCTCATATGTACCAATCTGGGTGCAAGAATGGATTCAGAGCCTAAACGTTGGAGAATTTTGGCTGATGTGCTCTATGACTTGGGAACTGGCTTGGAAGTTCTTTCTCCTTTATGTCCACAACTTTTTCTTCAAGTCGCAGGGCTAGGAAATTTTGCAAAGGGGATGGCAGTTGTTGCAGCAAGAGCAACAAGATTACCAATTTATTCTGCCTTTGCAAAAGAGGGCAATCTTAGTGACCTCTTTGCCAAAGGGGAGGCCATCTCAACTCTGTTCAATGTCATTGGACTAGGAGCAGGGATCCAGTTAGCATCTACTGTCTGTTCATCAATGCAAGGAAAGATGGTTGTTGGGCCTCTTCTTTCAATGGTACATGTGTACAGTGTCATTGAAGAAATGCGGGCAACTCCTGTCAACACATTGAATCCACAGAGGACTGCTTTGATTGTGGCTGATTTTCTCAAGACAGGGAAGATATCAAGCCCAGCAGACCTAAGGTATCGAGAAGATCTCCTATTTCCTGGGCGACTCATAGAAGATGCTGGAAATGTAAAAGTGGGAAGGTCTTTCCACAAGGTCATCAAGCCTTCAAAACTTGATGAATTGAAACAAAGGTTCCCTGAAGAGAAGTTTATTTTAAGCCATGGAAACAAAGAGGTCGACATGATATTGGAGCACAGCGCCACTGGTGAAGATGCATTGAGGGGGTGGCTTGTTGCTGGATACGCTGCACATATCGAGAAGTCTTTTGGTGTGCCAAGTTCTTGTGCACTGCAAGAGGCGTACGAGAATATGAATGATGTATATGGTCCATTTGTATCTGAACTGCAGGCCAAGGGGTGGCATACTGATCGCTTTCTGGATGGAACAGGAAGTCGTTTCGCGTGGTGGTCGAATGTAGCTTCAGATTCAGACAATTCTTCTTCAAGATTTTGA

Protein Analysis

446

Amino Acids

49.21

Weight (kDa)

7.65

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 1242
AccI GTMKAC 1 cut(s) 1062
AccII CGCG 1 cut(s) 1286
AciI CCGC 2 cut(s) 106, 802
AclI AACGTT 1 cut(s) 451
AclWI GGATC 3 cut(s) 86, 697, 710
AcsI RAATTY 3 cut(s) 200, 459, 553
AcuI CTGAAG 2 cut(s) 1044, 1290
AfaI GTAC 4 cut(s) 415, 774, 782, 1187
AfiI CCNNNNNNNGG 1 cut(s) 1242
AflIII ACRYGT 1 cut(s) 775
AjnI CCWGG 1 cut(s) 922
AluBI AGCT 4 cut(s) 145, 369, 406, 1304
AluI AGCT 4 cut(s) 145, 369, 406, 1304
Alw21I GWGCWC 3 cut(s) 477, 1080, 1174
Alw26I GTCTC 1 cut(s) 103
Alw44I GTGCAC 1 cut(s) 1170
AlwI GGATC 3 cut(s) 86, 697, 710
AoxI GGCC 4 cut(s) 161, 660, 755, 1233
ApaLI GTGCAC 1 cut(s) 1170
ApeKI GCWGC 7 cut(s) 108, 271, 287, 326, 391, 581, 1130
ApoI RAATTY 3 cut(s) 200, 459, 553
Asp700I GAANNNNTTC 1 cut(s) 436
AspLEI GCGC 1 cut(s) 1085
AspS9I GGNCC 2 cut(s) 755, 1211
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 271, 1103
AvaII GGWCC 1 cut(s) 1211
AxyI CCTNAGG 2 cut(s) 211, 896
BaeGI GKGCMC 2 cut(s) 268, 1174
BaeI ACNNNNGTAYC 2 cut(s) 764, 797
BamHI GGATCC 1 cut(s) 702
BanI GGYRCC 1 cut(s) 64
Bbv12I GWGCWC 3 cut(s) 477, 1080, 1174
BbvI GCAGC 7 cut(s) 95, 274, 283, 313, 403, 593, 1117
BccI CCATC 6 cut(s) 172, 377, 562, 671, 739, 1259
BcgI CGANNNNNNTGC 2 cut(s) 1235, 1269
BciT130I CCWGG 1 cut(s) 924
BciVI GTATCC 1 cut(s) 1118
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 548, 692
BfmI CTRYAG 3 cut(s) 269, 327, 1229
BfoI RGCGCY 1 cut(s) 1086
BfuI GTATCC 1 cut(s) 1118
BglII AGATCT 1 cut(s) 910
BisI GCNGC 7 cut(s) 109, 272, 288, 327, 392, 582, 1131
BlsI GCNGC 7 cut(s) 110, 273, 289, 328, 393, 583, 1132
Bme1390I CCNGG 2 cut(s) 263, 924
Bme18I GGWCC 1 cut(s) 1211
BmgT120I GGNCC 2 cut(s) 755, 1211
BmiI GGNNCC 4 cut(s) 39, 66, 704, 1019
BmrFI CCNGG 2 cut(s) 263, 924
BmsI GCATC 5 cut(s) 15, 378, 722, 931, 1087
BplI GAGNNNNNCTC 4 cut(s) 650, 682, 897, 929
BpuEI CTTGAG 2 cut(s) 142, 848
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 4 cut(s) 123, 923, 1045, 1236
Bsc4I CCNNNNNNNGG 1 cut(s) 1242
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 5 cut(s) 164, 282, 496, 706, 1093
Bse21I CCTNAGG 2 cut(s) 211, 896
BseBI CCWGG 1 cut(s) 924
BseDI CCNNGG 4 cut(s) 123, 923, 1045, 1236
BseGI GGATG 4 cut(s) 388, 393, 573, 1270
BseLI CCNNNNNNNGG 1 cut(s) 1242
BseMII CTCAG 3 cut(s) 225, 259, 323
BseNI ACTGG 5 cut(s) 164, 282, 496, 706, 1093
BseSI GKGCMC 2 cut(s) 268, 1174
BseXI GCAGC 7 cut(s) 95, 274, 283, 313, 403, 593, 1117
BseYI CCCAGC 2 cut(s) 369, 886
BsgI GTGCAG 1 cut(s) 1116
Bsh1236I CGCG 1 cut(s) 1286
BshFI GGCC 4 cut(s) 163, 662, 757, 1235
BshNI GGYRCC 1 cut(s) 64
BsiHKAI GWGCWC 3 cut(s) 477, 1080, 1174
BsiSI CCGG 2 cut(s) 68, 262
BsiWI CGTACG 1 cut(s) 1185
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 1242
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 4 cut(s) 163, 662, 757, 1235
Bsp1286I GDGCHC 4 cut(s) 268, 477, 1080, 1174
Bsp1407I TGTACA 1 cut(s) 780
Bsp143I GATC 4 cut(s) 78, 702, 910, 1252
Bsp19I CCATGG 1 cut(s) 1045
BspACI CCGC 2 cut(s) 106, 802
BspANI GGCC 4 cut(s) 163, 662, 757, 1235
BspCNI CTCAG 3 cut(s) 224, 258, 322
BspFNI CGCG 1 cut(s) 1286
BspLI GGNNCC 4 cut(s) 39, 66, 704, 1019
BspMAI CTGCAG 3 cut(s) 273, 331, 1233
BspPI GGATC 3 cut(s) 86, 697, 710
BspT107I GGYRCC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 67
BsrGI TGTACA 1 cut(s) 780
BsrI ACTGG 5 cut(s) 164, 282, 496, 706, 1093
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 4 cut(s) 123, 923, 1045, 1236
BssMI GATC 4 cut(s) 78, 702, 910, 1252
BssT1I CCWWGG 3 cut(s) 123, 1045, 1236
Bst2UI CCWGG 1 cut(s) 924
Bst4CI ACNGT 4 cut(s) 139, 361, 721, 785
Bst6I CTCTTC 2 cut(s) 765, 1020
BstAPI GCANNNNNTGC 1 cut(s) 578
BstAUI TGTACA 1 cut(s) 780
BstC8I GCNNGC 4 cut(s) 331, 335, 804, 1233
BstDEI CTNAG 5 cut(s) 211, 245, 309, 635, 896
BstDSI CCRYGG 1 cut(s) 1045
BstF5I GGATG 4 cut(s) 388, 393, 573, 1270
BstFNI CGCG 1 cut(s) 1286
BstH2I RGCGCY 1 cut(s) 1086
BstHHI GCGC 1 cut(s) 1085
BstKTI GATC 4 cut(s) 81, 705, 913, 1255
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 4 cut(s) 78, 702, 910, 1252
BstMWI GCNNNNNNNGC 3 cut(s) 578, 587, 1127
BstNI CCWGG 1 cut(s) 924
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 2 cut(s) 261, 922
BstSFI CTRYAG 3 cut(s) 269, 327, 1229
BstSLI GKGCMC 2 cut(s) 268, 1174
BstUI CGCG 1 cut(s) 1286
BstV1I GCAGC 7 cut(s) 95, 274, 283, 313, 403, 593, 1117
BstX2I RGATCY 2 cut(s) 702, 910
BstYI RGATCY 2 cut(s) 702, 910
Bsu36I CCTNAGG 2 cut(s) 211, 896
BsuI GTATCC 1 cut(s) 1118
BsuRI GGCC 4 cut(s) 163, 662, 757, 1235
BtgI CCRYGG 1 cut(s) 1045
BtsCI GGATG 4 cut(s) 388, 393, 573, 1270
BtsI GCAGTG 2 cut(s) 266, 1172
BtsIMutI CAGTG 7 cut(s) 135, 266, 289, 303, 790, 1086, 1172
Cac8I GCNNGC 4 cut(s) 331, 335, 804, 1233
CfoI GCGC 1 cut(s) 1085
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 755, 1211
Csp6I GTAC 4 cut(s) 414, 773, 781, 1186
CviAII CATG 5 cut(s) 59, 397, 776, 1046, 1066
CviQI GTAC 4 cut(s) 414, 773, 781, 1186
DdeI CTNAG 5 cut(s) 211, 245, 309, 635, 896
DpnI GATC 4 cut(s) 80, 704, 912, 1254
DpnII GATC 4 cut(s) 78, 702, 910, 1252
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
Eam1104I CTCTTC 2 cut(s) 765, 1020
EarI CTCTTC 2 cut(s) 765, 1020
Eco130I CCWWGG 3 cut(s) 123, 1045, 1236
Eco32I GATATC 3 cut(s) 218, 242, 879
Eco47I GGWCC 1 cut(s) 1211
Eco57I CTGAAG 2 cut(s) 1044, 1290
Eco81I CCTNAGG 2 cut(s) 211, 896
EcoRII CCWGG 1 cut(s) 922
EcoRV GATATC 3 cut(s) 218, 242, 879
EcoT14I CCWWGG 3 cut(s) 123, 1045, 1236
EcoT22I ATGCAT 1 cut(s) 1102
ErhI CCWWGG 3 cut(s) 123, 1045, 1236
FaeI CATG 5 cut(s) 62, 400, 779, 1049, 1069
FaqI GGGAC 1 cut(s) 298
FatI CATG 5 cut(s) 58, 396, 775, 1045, 1065
FauI CCCGC 1 cut(s) 795
FauNDI CATATG 1 cut(s) 410
FblI GTMKAC 1 cut(s) 1062
Fnu4HI GCNGC 7 cut(s) 109, 272, 288, 327, 392, 582, 1131
FokI GGATG 4 cut(s) 395, 400, 580, 1277
Fsp4HI GCNGC 7 cut(s) 109, 272, 288, 327, 392, 582, 1131
FspBI CTAG 2 cut(s) 548, 692
GlaI GCGC 1 cut(s) 1084
GluI GCNGC 7 cut(s) 109, 272, 288, 327, 392, 582, 1131
GsaI CCCAGC 2 cut(s) 373, 890
HaeII RGCGCY 1 cut(s) 1086
HaeIII GGCC 4 cut(s) 163, 662, 757, 1235
HapII CCGG 2 cut(s) 68, 262
HhaI GCGC 1 cut(s) 1085
Hin1II CATG 5 cut(s) 62, 400, 779, 1049, 1069
Hin6I GCGC 1 cut(s) 1083
HinP1I GCGC 1 cut(s) 1083
HincII GTYRAC 3 cut(s) 131, 817, 1063
HindII GTYRAC 3 cut(s) 131, 817, 1063
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 7 cut(s) 92, 155, 185, 437, 826, 930, 1310
HpaII CCGG 2 cut(s) 68, 262
HphI GGTGA 2 cut(s) 271, 1103
Hpy166II GTNNAC 6 cut(s) 131, 521, 781, 817, 1063, 1172
Hpy188I TCNGA 6 cut(s) 91, 248, 442, 1225, 1309, 1315
Hpy188III TCNNGA 8 cut(s) 76, 149, 213, 865, 905, 1141, 1262, 1329
Hpy8I GTNNAC 6 cut(s) 131, 521, 781, 817, 1063, 1172
HpyAV CCTTC 4 cut(s) 28, 230, 957, 999
HpyCH4III ACNGT 4 cut(s) 139, 361, 721, 785
HpyCH4IV ACGT 1 cut(s) 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 578, 587, 1127
HpyF3I CTNAG 5 cut(s) 211, 245, 309, 635, 896
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 5 cut(s) 62, 400, 779, 1049, 1069
HspAI GCGC 1 cut(s) 1083
Kzo9I GATC 4 cut(s) 78, 702, 910, 1252
LmnI GCTCC 2 cut(s) 695, 1075
Lsp1109I GCAGC 7 cut(s) 95, 274, 283, 313, 403, 593, 1117
LweI GCATC 5 cut(s) 15, 378, 722, 931, 1087
MaeI CTAG 2 cut(s) 548, 692
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 1 cut(s) 638
MalI GATC 4 cut(s) 80, 704, 912, 1254
MboI GATC 4 cut(s) 78, 702, 910, 1252
MflI RGATCY 2 cut(s) 702, 910
MhlI GDGCHC 4 cut(s) 268, 477, 1080, 1174
MluCI AATT 7 cut(s) 200, 257, 459, 553, 603, 1004, 1318
MlyI GAGTC 3 cut(s) 149, 179, 924
MmeI TCCRAC 2 cut(s) 77, 434
Mph1103I ATGCAT 1 cut(s) 1102
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 1 cut(s) 1040
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 2 cut(s) 68, 262
MspR9I CCNGG 2 cut(s) 263, 924
MvaI CCWGG 1 cut(s) 924
MvnI CGCG 1 cut(s) 1286
MwoI GCNNNNNNNGC 3 cut(s) 578, 587, 1127
NciI CCSGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 1045
NdeI CATATG 1 cut(s) 410
NdeII GATC 4 cut(s) 78, 702, 910, 1252
NlaIII CATG 5 cut(s) 62, 400, 779, 1049, 1069
NlaIV GGNNCC 4 cut(s) 39, 66, 704, 1019
NmuCI GTSAC 1 cut(s) 638
NsiI ATGCAT 1 cut(s) 1102
NspI RCATGY 1 cut(s) 779
PciI ACATGT 1 cut(s) 775
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 4 cut(s) 92, 437, 826, 1310
Pfl23II CGTACG 1 cut(s) 1185
PflMI CCANNNNNTGG 1 cut(s) 1242
PkrI GCNGC 7 cut(s) 110, 273, 289, 328, 393, 583, 1132
PleI GAGTC 3 cut(s) 149, 179, 924
PpsI GAGTC 3 cut(s) 149, 179, 924
PscI ACATGT 1 cut(s) 775
Psp1406I AACGTT 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 922
PspFI CCCAGC 2 cut(s) 369, 886
PspGI CCWGG 1 cut(s) 922
PspLI CGTACG 1 cut(s) 1185
PspN4I GGNNCC 4 cut(s) 39, 66, 704, 1019
PspPI GGNCC 2 cut(s) 755, 1211
PsrI GAACNNNNNNTAC 2 cut(s) 357, 389
PstI CTGCAG 3 cut(s) 273, 331, 1233
PsuI RGATCY 2 cut(s) 702, 910
RsaI GTAC 4 cut(s) 415, 774, 782, 1187
RsaNI GTAC 4 cut(s) 414, 773, 781, 1186
SalI GTCGAC 1 cut(s) 1061
SaqAI TTAA 1 cut(s) 1040
SatI GCNGC 7 cut(s) 109, 272, 288, 327, 392, 582, 1131
Sau3AI GATC 4 cut(s) 78, 702, 910, 1252
Sau96I GGNCC 2 cut(s) 755, 1211
SchI GAGTC 3 cut(s) 149, 179, 924
ScrFI CCNGG 2 cut(s) 263, 924
SduI GDGCHC 4 cut(s) 268, 477, 1080, 1174
SfaNI GCATC 5 cut(s) 15, 378, 722, 931, 1087
SfcI CTRYAG 3 cut(s) 269, 327, 1229
SinI GGWCC 1 cut(s) 1211
SmlI CTYRAG 2 cut(s) 157, 863
SmoI CTYRAG 2 cut(s) 157, 863
Sse9I AATT 7 cut(s) 200, 257, 459, 553, 603, 1004, 1318
SsiI CCGC 2 cut(s) 106, 802
SspMI CTAG 2 cut(s) 548, 692
StyD4I CCNGG 2 cut(s) 261, 922
StyI CCWWGG 3 cut(s) 123, 1045, 1236
TaaI ACNGT 4 cut(s) 139, 361, 721, 785
TaiI ACGT 1 cut(s) 454
TaqI TCGA 5 cut(s) 81, 904, 1062, 1140, 1295
TasI AATT 7 cut(s) 200, 257, 459, 553, 603, 1004, 1318
TatI WGTACW 1 cut(s) 780
TfiI GAWTC 4 cut(s) 92, 437, 826, 1310
Tru1I TTAA 1 cut(s) 1040
Tru9I TTAA 1 cut(s) 1040
TscAI CASTG 7 cut(s) 142, 273, 289, 303, 790, 1093, 1179
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 7 cut(s) 108, 271, 287, 326, 391, 581, 1130
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 5 cut(s) 17, 249, 717, 1017, 1211
TspRI CASTG 7 cut(s) 142, 273, 289, 303, 790, 1093, 1179
Van91I CCANNNNNTGG 1 cut(s) 1242
VneI GTGCAC 1 cut(s) 1170
VpaK11BI GGWCC 1 cut(s) 1211
XapI RAATTY 3 cut(s) 200, 459, 553
XceI RCATGY 1 cut(s) 779
XmiI GTMKAC 1 cut(s) 1062
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 2 cut(s) 548, 692
Zsp2I ATGCAT 1 cut(s) 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.