Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009210

Physical Location & Seq

Genomic Coordinates Reverse (-)

21385522 .. 21387004

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGAAAGCTTATATGTAGCAATCTGGGCGCAAGAATGGATTCCGAGCCTAAACGTTGGAGAATTTTGGCTGACGTGCTCTATGACTTTGGCACTGGCATGGAAATTCTTTCTCCTTTGTGTCCACAGCTTTTTCTTCAAGTCGCAGGTTTAGGCAATTTTGCAAAGGGGATGGCAGTTGTTGCAGCGAGAGCAACAAGATTACCAATTTATTCGGCCTTTGCAAAAGAGGGCAATCTTAGTGATCTATTTGCCAAAGGGGAGGCAATCTCAACCGTGTTCAATGTCATTGGAATAGGAGCAGGGATCCAATTAGCATCTACTGTCTGCTCGTCCATGCAAGGAAAGATGGTTGTTGGGCCTCTTCTTTCAATGGTGCATGTATACTGTGTTATTGAAGAAATGCGGGCAACTCCTATCAACACATTGAATCCACAGAGGACTGCAATGATTGTGGCTGATTTTCTTAAGACAGGAAAAGTATCAAGCCCGGCTGACCTGAGGTATCGGGAAGACCTCCTATTCCCGGGGCGACTCATAAAGGATGCCGGAAATGTAAGAGTGGGAAGGTCTTTCCACGAGGTCATTAAGCCTTCAAAACTTGGTGAATTGAAAGAAATATTCCCCGAAGAAAAGTTTCTTTTAAATCGTGGAAACAAAGGGGTAGACATGATATTGGAGCAAAATGCTACCGGTGAAGACGCATTGAGAGGGTGGCTTGTTGCTGGATACGCTGCAGATATAGAGAAGTCTTTTCATGTGCCGAGTTCGAGCGCACTGGATGAGGCTTACGAGAAGATGAATGACGTATTTGGGCCATTTGTATCGGAACTGCAGGCCAACGGGTGGCATACCGATCGATTTCTCGATGGAACAGGAAGCCGTTTTGCGTGGGGGTCGAATGTAGCTACAGATAGTAATTCTTCTAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009914 GO:0009926 GO:0009941 GO:0010224 GO:0010817 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF647

Protein Analysis

312

Amino Acids

33.91

Weight (kDa)

6.46

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31190 AT2G31190
fragaria_vesca	FvH4_2g21510 FvH4_2g21510
malus_domestica	MD05G1197700.v1.1 MD10G1184300.v1.1
prunus_persica	Prupe.8G224000_v2.0.a1 Prupe.8G224000_v2.0.a1
pyrus_communis	pycom05g18460 pycom10g15960
rosa_chinensis	RchiOBHm_Chr6g0288161
rosa_laevigata	RLG00000012433
rosa_multiflora	Rmu_sc0002207.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180430
rosa_rugosa	Rorug06G0194600 Rorug06G0194600
rosa_samantha	Rh6AG305000 Rh6BG311000 Rh6CG319000 Rh6DG304100
rosa_wichuraiana	Rw0G014450 Rw6G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	846
AccI	GTMKAC	2 cut(s)	384, 666
AciI	CCGC	1 cut(s)	406
AclI	AACGTT	1 cut(s)	55
AclWI	GGATC	2 cut(s)	301, 314
AcsI	RAATTY	2 cut(s)	63, 105
AfiI	CCNNNNNNNGG	2 cut(s)	526, 846
AflII	CTTAAG	1 cut(s)	467
AgeI	ACCGGT	1 cut(s)	692
AgsI	TTSAA	7 cut(s)	140, 283, 372, 398, 430, 597, 613
AjiI	CACGTC	1 cut(s)	76
AluBI	AGCT	3 cut(s)	10, 130, 908
AluI	AGCT	3 cut(s)	10, 130, 908
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	301, 314
Ama87I	CYCGRG	1 cut(s)	526
AoxI	GGCC	4 cut(s)	216, 359, 815, 837
ApeKI	GCWGC	2 cut(s)	185, 734
ApoI	RAATTY	2 cut(s)	63, 105
AsiGI	ACCGGT	1 cut(s)	692
Asp700I	GAANNNNTTC	2 cut(s)	40, 636
AspLEI	GCGC	2 cut(s)	32, 776
AspS9I	GGNCC	2 cut(s)	359, 815
AsuC2I	CCSGG	3 cut(s)	491, 527, 528
AsuHPI	GGTGA	2 cut(s)	617, 707
AvaI	CYCGRG	1 cut(s)	526
AxyI	CCTNAGG	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	306
BauI	CACGAG	1 cut(s)	578
BbsI	GAAGAC	2 cut(s)	519, 705
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	197, 721
BccI	CCATC	3 cut(s)	166, 343, 863
BceAI	ACGGC	1 cut(s)	867
BcgI	CGANNNNNNTGC	2 cut(s)	839, 873
BciVI	GTATCC	1 cut(s)	722
BcnI	CCSGG	3 cut(s)	491, 527, 528
BfaI	CTAG	1 cut(s)	927
BfmI	CTRYAG	3 cut(s)	735, 833, 909
BfrI	CTTAAG	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	722
BisI	GCNGC	2 cut(s)	186, 735
BlsI	GCNGC	2 cut(s)	187, 736
Bme1390I	CCNGG	3 cut(s)	491, 527, 528
BmeT110I	CYCGRG	1 cut(s)	526
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	359, 815
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	3 cut(s)	491, 527, 528
BmsI	GCATC	2 cut(s)	326, 535
BpiI	GAAGAC	2 cut(s)	519, 705
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpuMI	CCSGG	3 cut(s)	491, 527, 528
Bsa29I	ATCGAT	1 cut(s)	859
BsaJI	CCNNGG	2 cut(s)	526, 527
BsaWI	WCCGGW	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 846
Bse118I	RCCGGY	1 cut(s)	692
Bse1I	ACTGG	2 cut(s)	100, 783
Bse21I	CCTNAGG	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	453
BseCI	ATCGAT	1 cut(s)	859
BseDI	CCNNGG	2 cut(s)	526, 527
BseGI	GGATG	3 cut(s)	177, 550, 787
BseLI	CCNNNNNNNGG	2 cut(s)	526, 846
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	2 cut(s)	100, 783
BseXI	GCAGC	2 cut(s)	197, 721
Bsh1285I	CGRYCG	1 cut(s)	859
BshFI	GGCC	4 cut(s)	218, 361, 817, 839
BshTI	ACCGGT	1 cut(s)	692
BshVI	ATCGAT	1 cut(s)	859
BsiEI	CGRYCG	1 cut(s)	859
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	526
BsiSI	CCGG	4 cut(s)	491, 527, 549, 693
BslI	CCNNNNNNNGG	2 cut(s)	526, 846
BsnI	GGCC	4 cut(s)	218, 361, 817, 839
BsoBI	CYCGRG	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	244, 306, 856
BspACI	CCGC	1 cut(s)	406
BspANI	GGCC	4 cut(s)	218, 361, 817, 839
BspCNI	CTCAG	1 cut(s)	492
BspDI	ATCGAT	1 cut(s)	859
BspLI	GGNNCC	1 cut(s)	308
BspMAI	CTGCAG	2 cut(s)	739, 837
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	301, 314
BspTI	CTTAAG	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	692
BsrI	ACTGG	2 cut(s)	100, 783
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	2 cut(s)	526, 527
BssMI	GATC	3 cut(s)	244, 306, 856
BssNAI	GTATAC	1 cut(s)	385
BssSI	CACGAG	1 cut(s)	578
Bst1107I	GTATAC	1 cut(s)	385
Bst2BI	CACGAG	1 cut(s)	578
Bst4CI	ACNGT	3 cut(s)	277, 325, 389
Bst6I	CTCTTC	1 cut(s)	369
BstAFI	CTTAAG	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	408, 837
BstDEI	CTNAG	2 cut(s)	239, 500
BstF5I	GGATG	3 cut(s)	177, 550, 787
BstHHI	GCGC	2 cut(s)	32, 776
BstKTI	GATC	3 cut(s)	247, 309, 859
BstMBI	GATC	3 cut(s)	244, 306, 856
BstMCI	CGRYCG	1 cut(s)	859
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 182, 191, 731
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	3 cut(s)	489, 525, 526
BstSFI	CTRYAG	3 cut(s)	735, 833, 909
BstV1I	GCAGC	2 cut(s)	197, 721
BstV2I	GAAGAC	2 cut(s)	519, 705
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BstZ17I	GTATAC	1 cut(s)	385
Bsu15I	ATCGAT	1 cut(s)	859
Bsu36I	CCTNAGG	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	722
BsuRI	GGCC	4 cut(s)	218, 361, 817, 839
BsuTUI	ATCGAT	1 cut(s)	859
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	177, 550, 787
BtsIMutI	CAGTG	2 cut(s)	93, 776
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	408, 837
CfoI	GCGC	2 cut(s)	32, 776
Cfr10I	RCCGGY	1 cut(s)	692
Cfr13I	GGNCC	2 cut(s)	359, 815
Cfr9I	CCCGGG	1 cut(s)	526
ClaI	ATCGAT	1 cut(s)	859
CseI	GACGC	1 cut(s)	710
CspAI	ACCGGT	1 cut(s)	692
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	5 cut(s)	100, 337, 380, 670, 758
DdeI	CTNAG	2 cut(s)	239, 500
DpnI	GATC	3 cut(s)	246, 308, 858
DpnII	GATC	3 cut(s)	244, 306, 856
DraI	TTTAAA	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	526
FaeI	CATG	5 cut(s)	103, 340, 383, 673, 761
FatI	CATG	5 cut(s)	99, 336, 379, 669, 757
FauI	CCCGC	1 cut(s)	399
FblI	GTMKAC	2 cut(s)	384, 666
Fnu4HI	GCNGC	2 cut(s)	186, 735
FokI	GGATG	3 cut(s)	184, 557, 794
Fsp4HI	GCNGC	2 cut(s)	186, 735
FspBI	CTAG	1 cut(s)	927
GlaI	GCGC	2 cut(s)	31, 775
GluI	GCNGC	2 cut(s)	186, 735
HaeIII	GGCC	4 cut(s)	218, 361, 817, 839
HapII	CCGG	4 cut(s)	491, 527, 549, 693
HgaI	GACGC	1 cut(s)	710
HhaI	GCGC	2 cut(s)	32, 776
Hin1II	CATG	5 cut(s)	103, 340, 383, 673, 761
Hin6I	GCGC	2 cut(s)	30, 774
HinP1I	GCGC	2 cut(s)	30, 774
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	41, 430, 534
HpaII	CCGG	4 cut(s)	491, 527, 549, 693
HphI	GGTGA	2 cut(s)	617, 707
Hpy166II	GTNNAC	3 cut(s)	125, 385, 667
Hpy188I	TCNGA	2 cut(s)	46, 829
Hpy188III	TCNNGA	3 cut(s)	509, 866, 927
Hpy8I	GTNNAC	3 cut(s)	125, 385, 667
HpyAV	CCTTC	2 cut(s)	561, 603
HpyCH4III	ACNGT	3 cut(s)	277, 325, 389
HpyCH4IV	ACGT	3 cut(s)	55, 75, 807
HpyCH4V	TGCA	8 cut(s)	164, 185, 224, 340, 379, 446, 737, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 182, 191, 731
HpyF3I	CTNAG	2 cut(s)	239, 500
HpySE526I	ACGT	3 cut(s)	55, 75, 807
Hsp92II	CATG	5 cut(s)	103, 340, 383, 673, 761
HspAI	GCGC	2 cut(s)	30, 774
Kzo9I	GATC	3 cut(s)	244, 306, 856
LmnI	GCTCC	2 cut(s)	299, 679
Lsp1109I	GCAGC	2 cut(s)	197, 721
LweI	GCATC	2 cut(s)	326, 535
MaeI	CTAG	1 cut(s)	927
MaeII	ACGT	3 cut(s)	55, 75, 807
MalI	GATC	3 cut(s)	246, 308, 858
MboI	GATC	3 cut(s)	244, 306, 856
MboII	GAAGA	8 cut(s)	128, 356, 410, 524, 641, 710, 808, 915
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	7 cut(s)	63, 105, 157, 207, 311, 608, 919
MlyI	GAGTC	1 cut(s)	528
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	9 cut(s)	223, 256, 372, 432, 495, 527, 574, 704, 778
MroXI	GAANNNNTTC	2 cut(s)	40, 636
MseI	TTAA	3 cut(s)	468, 588, 644
MslI	CAYNNNNRTG	1 cut(s)	98
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	4 cut(s)	491, 527, 549, 693
MspR9I	CCNGG	3 cut(s)	491, 527, 528
MwoI	GCNNNNNNNGC	4 cut(s)	27, 182, 191, 731
NciI	CCSGG	3 cut(s)	491, 527, 528
NdeII	GATC	3 cut(s)	244, 306, 856
NlaIII	CATG	5 cut(s)	103, 340, 383, 673, 761
NlaIV	GGNNCC	1 cut(s)	308
NmeAIII	GCCGAG	1 cut(s)	789
NspI	RCATGY	1 cut(s)	383
PdmI	GAANNNNTTC	2 cut(s)	40, 636
PfeI	GAWTC	2 cut(s)	41, 430
PflMI	CCANNNNNTGG	1 cut(s)	846
PinAI	ACCGGT	1 cut(s)	692
PkrI	GCNGC	2 cut(s)	187, 736
Ple19I	CGATCG	1 cut(s)	859
PleI	GAGTC	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	528
Psp1406I	AACGTT	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	2 cut(s)	359, 815
PstI	CTGCAG	2 cut(s)	739, 837
PsuI	RGATCY	1 cut(s)	306
PvuI	CGATCG	1 cut(s)	859
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	468, 588, 644
SatI	GCNGC	2 cut(s)	186, 735
Sau3AI	GATC	3 cut(s)	244, 306, 856
Sau96I	GGNCC	2 cut(s)	359, 815
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	3 cut(s)	491, 527, 528
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	2 cut(s)	326, 535
SfcI	CTRYAG	3 cut(s)	735, 833, 909
SmaI	CCCGGG	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	7 cut(s)	63, 105, 157, 207, 311, 608, 919
SsiI	CCGC	1 cut(s)	406
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	1 cut(s)	927
StyD4I	CCNGG	3 cut(s)	489, 525, 526
TaaI	ACNGT	3 cut(s)	277, 325, 389
TaiI	ACGT	3 cut(s)	58, 78, 810
TaqI	TCGA	4 cut(s)	770, 859, 867, 899
TasI	AATT	7 cut(s)	63, 105, 157, 207, 311, 608, 919
TfiI	GAWTC	2 cut(s)	41, 430
Tru1I	TTAA	3 cut(s)	468, 588, 644
Tru9I	TTAA	3 cut(s)	468, 588, 644
TscAI	CASTG	2 cut(s)	100, 783
TseI	GCWGC	2 cut(s)	185, 734
TspDTI	ATGAA	2 cut(s)	746, 815
TspMI	CCCGGG	1 cut(s)	526
TspRI	CASTG	2 cut(s)	100, 783
Van91I	CCANNNNNTGG	1 cut(s)	846
Vha464I	CTTAAG	1 cut(s)	467
XapI	RAATTY	2 cut(s)	63, 105
XbaI	TCTAGA	1 cut(s)	926
XceI	RCATGY	1 cut(s)	383
XmaI	CCCGGG	1 cut(s)	526
XmiI	GTMKAC	2 cut(s)	384, 666
XmnI	GAANNNNTTC	2 cut(s)	40, 636
XspI	CTAG	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.