AT2G31480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017148
Physical Location & Seq
Reverse (-)
13408963 .. 13411031
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31480.1

Sequence Viewer

Length: 1419 bp
ATGGCTTCTACAGGTGGTGGGAAAGATGGATCTAAAGGTTTTGTGAAGAGGGTTACATCAACTTTCTCCATTAGGAAAAAGAAGAACACAACAAGTGATCCAAAACTACTTCTTCCTCGATCGAAATCAACCGGTGCTAACTATGAATCTATGAGGCTACCTCAGGGGAAAAAGGCTCTTCCAGATGTTGTTACAACAAAAGACACAAAGAGAACCAAATCTGCAGGTGTTTCGCCACAACCAAGACGTGAAAAGATTGATGAATCCGGTAAACAGTTTATGAAGGTGAGATGTTTTGATGACAGTGACTCCATTTGGTTATCTTCAGATTGTGCCTCTCCTACGTCTCTTTTAGAGGAACGTAGATTATCTGTCTCGTTTCATTTCTCAGTAGACGAAAAGATCGTCTCGTGGTTGTCCAGTGTGGCTAACTCTTCTCTGTCTTTAAATCAAGAATCCACCAGCTCAAACAAAGAGAATCATCATCAAAAAAGTTCAAAGAACACAAAAACTTCTTTAGAAAACGTTCGAAAAGATGGAAAAGTTTGCAACTCATCAGCTGGGAAAGCTCGTGGTACTGGTTCTGCAAAGCCGTCTTTACCAGAAAGCAACAACAAGACTTGTCCTCAGAAACAATGTGAAGAGTCATCTATTTCCAACAGATTTGTGACTCTTGAAGAAAAGAAAGTTAGCTTCTCAGTAGCAAAAACAGAGAAGTCTCCTTCACCAGATAACTCAACTGCCACTGCGACATCATCATTAAAGAAGAGTGCAGAGATTGGGGTCACAAAGAGTAAGATTGTTGTGGAGCCACTTTTTTGGCCATTTGAGCAGAAGTTTGATTGGACACCAGAGGATATTTTAAAGCATTTTTCAATGTCTCCGAGGAGAAAGAAGTCGCTAGGATCCAAGATTGCAGGTACCTCTCCAAGATCAATGAGGGCACAACTCCAAACAAGAAAGCTAGATCTAAAAGAAGGGTGTAAGAGAAAGCTCATGTTCAACGGTCCTGGATCAAATTCAAAACCAACAAGAATCCCAGAACTAAACAGAACAATCAGCAATAGCAGCAACAATAGTAGCATGAAGAAAACCGAGATCAGCAAGAACCAACAACCTATAAGGAACAGTGTGAAGAGAAACAAAAGTTTACCGTCGAGGTTGAGAAAATCGAGCAAAATATCTTCAAAGGTGGTACCTATTGAAGCTGCGGAAGAGAGTGGAGAAATAGTTAAAGAGCAAAAAACACCTAAGAAGCTCATCATGACCCGCAAGTCCAGGACATTCTTAGAAGATGACTTTGCTTTAATGAATGATTTCTCTATAGAAAAGGCGGTCGGGCTTTGCGAGTTTAAGGGAAGAGAAGGCATAGATTCAGATTTCAACACTGATGGTTTCTTGTTCGACGATTCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

472

Amino Acids

52.31

Weight (kDa)

9.89

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05894 AT2G31480
prunus_persica Prupe.1G190600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407081
rosa_laevigata RLG00000008738
rosa_multiflora Rmu_sc0000600.1_g000001
rosa_roxburghii Rroxscaffold_5G00351810
rosa_rugosa Rorug04G0077900
rosa_samantha Rh4AG142600 Rh4BG140500 Rh4CG149100 Rh4DG136700
rosa_wichuraiana Rw4G011620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 215
AasI GACNNNNNNGTC 1 cut(s) 1273
Acc36I ACCTGC 2 cut(s) 215, 908
Acc65I GGTACC 2 cut(s) 920, 1195
AccB1I GGYRCC 2 cut(s) 920, 1195
AccI GTMKAC 1 cut(s) 393
AciI CCGC 3 cut(s) 1211, 1270, 1334
AclI AACGTT 1 cut(s) 525
AclWI GGATC 5 cut(s) 37, 92, 900, 913, 1021
AcoI YGGCCR 1 cut(s) 821
AcsI RAATTY 1 cut(s) 1018
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 3 cut(s) 577, 922, 1197
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 8 cut(s) 498, 677, 876, 1003, 1023, 1188, 1205, 1384
AjiI CACGTC 1 cut(s) 248
AjnI CCWGG 2 cut(s) 1009, 1277
AluBI AGCT 8 cut(s) 465, 560, 569, 693, 964, 994, 1208, 1258
AluI AGCT 8 cut(s) 465, 560, 569, 693, 964, 994, 1208, 1258
Alw26I GTCTC 5 cut(s) 351, 379, 412, 723, 885
AlwI GGATC 5 cut(s) 37, 92, 900, 913, 1021
AoxI GGCC 1 cut(s) 821
ApeKI GCWGC 2 cut(s) 1068, 1208
ApoI RAATTY 1 cut(s) 1018
ArsI GACNNNNNNTTYG 2 cut(s) 390, 422
AsiGI ACCGGT 1 cut(s) 131
Asp700I GAANNNNTTC 2 cut(s) 525, 1316
Asp718I GGTACC 2 cut(s) 920, 1195
AspS9I GGNCC 1 cut(s) 1007
AsuHPI GGTGA 2 cut(s) 298, 717
AsuII TTCGAA 1 cut(s) 529
AvaII GGWCC 1 cut(s) 1007
AxyI CCTNAGG 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 946
BalI TGGCCA 1 cut(s) 823
BamHI GGATCC 1 cut(s) 905
BanI GGYRCC 2 cut(s) 920, 1195
BauI CACGAG 2 cut(s) 409, 570
BbvI GCAGC 2 cut(s) 1080, 1195
BccI CCATC 3 cut(s) 20, 530, 1385
BceAI ACGGC 1 cut(s) 577
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BciT130I CCWGG 2 cut(s) 1011, 1279
BcoDI GTCTC 5 cut(s) 351, 379, 412, 723, 885
BfaI CTAG 2 cut(s) 902, 965
BfmI CTRYAG 3 cut(s) 9, 222, 1323
BfuAI ACCTGC 2 cut(s) 215, 908
BglII AGATCT 1 cut(s) 967
BisI GCNGC 2 cut(s) 1069, 1209
BlsI GCNGC 2 cut(s) 1070, 1210
Bme1390I CCNGG 2 cut(s) 1011, 1279
Bme18I GGWCC 1 cut(s) 1007
BmgBI CACGTC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 1007
BmiI GGNNCC 4 cut(s) 810, 907, 922, 1197
BmrFI CCNGG 2 cut(s) 1011, 1279
BplI GAGNNNNNCTC 2 cut(s) 145, 177
Bpu14I TTCGAA 1 cut(s) 529
BsaBI GATNNNNATC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 884
BsaWI WCCGGW 2 cut(s) 131, 266
BsaXI ACNNNNNCTCC 4 cut(s) 293, 323, 1215, 1245
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 2 cut(s) 420, 583
Bse21I CCTNAGG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 124
BseBI CCWGG 2 cut(s) 1011, 1279
BseDI CCNNGG 1 cut(s) 884
BseJI GATNNNNATC 1 cut(s) 124
BseMII CTCAG 4 cut(s) 176, 402, 641, 711
BseNI ACTGG 2 cut(s) 420, 583
BseRI GAGGAG 1 cut(s) 901
BseSI GKGCMC 1 cut(s) 946
BseXI GCAGC 2 cut(s) 1080, 1195
BseYI CCCAGC 1 cut(s) 560
BsgI GTGCAG 1 cut(s) 792
Bsh1285I CGRYCG 2 cut(s) 122, 1338
BshFI GGCC 1 cut(s) 823
BshNI GGYRCC 2 cut(s) 920, 1195
BshTI ACCGGT 1 cut(s) 131
BsiEI CGRYCG 2 cut(s) 122, 1338
BsiSI CCGG 2 cut(s) 132, 267
BsmAI GTCTC 5 cut(s) 351, 379, 412, 723, 885
BsmBI CGTCTC 2 cut(s) 351, 412
BsnI GGCC 1 cut(s) 823
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 946
Bsp143I GATC 9 cut(s) 29, 97, 119, 402, 905, 932, 967, 1013, 1098
BspACI CCGC 3 cut(s) 1211, 1270, 1334
BspANI GGCC 1 cut(s) 823
BspCNI CTCAG 4 cut(s) 175, 401, 640, 710
BspHI TCATGA 1 cut(s) 1263
BspLI GGNNCC 4 cut(s) 810, 907, 922, 1197
BspMAI CTGCAG 1 cut(s) 226
BspMI ACCTGC 2 cut(s) 215, 908
BspPI GGATC 5 cut(s) 37, 92, 900, 913, 1021
BspQI GCTCTTC 1 cut(s) 183
BspT104I TTCGAA 1 cut(s) 529
BspT107I GGYRCC 2 cut(s) 920, 1195
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 2 cut(s) 420, 583
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 884
BssMI GATC 9 cut(s) 29, 97, 119, 402, 905, 932, 967, 1013, 1098
BssSI CACGAG 2 cut(s) 409, 570
Bst2BI CACGAG 2 cut(s) 409, 570
Bst2UI CCWGG 2 cut(s) 1011, 1279
Bst4CI ACNGT 5 cut(s) 276, 305, 1007, 1130, 1155
Bst6I CTCTTC 8 cut(s) 41, 183, 439, 636, 761, 1130, 1209, 1354
BstBI TTCGAA 1 cut(s) 529
BstDEI CTNAG 6 cut(s) 162, 388, 627, 697, 1251, 1288
BstKTI GATC 9 cut(s) 32, 100, 122, 405, 908, 935, 970, 1016, 1101
BstMAI GTCTC 5 cut(s) 351, 379, 412, 723, 885
BstMBI GATC 9 cut(s) 29, 97, 119, 402, 905, 932, 967, 1013, 1098
BstMCI CGRYCG 2 cut(s) 122, 1338
BstMWI GCNNNNNNNGC 3 cut(s) 566, 829, 1068
BstNI CCWGG 2 cut(s) 1011, 1279
BstSCI CCNGG 2 cut(s) 1009, 1277
BstSFI CTRYAG 3 cut(s) 9, 222, 1323
BstSLI GKGCMC 1 cut(s) 946
BstV1I GCAGC 2 cut(s) 1080, 1195
BstX2I RGATCY 3 cut(s) 29, 905, 967
BstXI CCANNNNNNTGG 1 cut(s) 819
BstYI RGATCY 3 cut(s) 29, 905, 967
Bsu36I CCTNAGG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 823
BtrI CACGTC 1 cut(s) 248
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 5 cut(s) 310, 427, 744, 1135, 1386
BveI ACCTGC 2 cut(s) 215, 908
CciI TCATGA 1 cut(s) 1263
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 1007
Csp6I GTAC 3 cut(s) 576, 921, 1196
CspAI ACCGGT 1 cut(s) 131
CviAII CATG 3 cut(s) 997, 1084, 1264
CviQI GTAC 3 cut(s) 576, 921, 1196
DdeI CTNAG 6 cut(s) 162, 388, 627, 697, 1251, 1288
DpnI GATC 9 cut(s) 31, 99, 121, 404, 907, 934, 969, 1015, 1100
DpnII GATC 9 cut(s) 29, 97, 119, 402, 905, 932, 967, 1013, 1098
DraI TTTAAA 2 cut(s) 447, 864
DrdI GACNNNNNNGTC 1 cut(s) 1273
DseDI GACNNNNNNGTC 1 cut(s) 1273
EaeI YGGCCR 1 cut(s) 821
Eam1104I CTCTTC 8 cut(s) 41, 183, 439, 636, 761, 1130, 1209, 1354
EarI CTCTTC 8 cut(s) 41, 183, 439, 636, 761, 1130, 1209, 1354
Eco47I GGWCC 1 cut(s) 1007
Eco57I CTGAAG 1 cut(s) 309
Eco81I CCTNAGG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 1009, 1277
Esp3I CGTCTC 2 cut(s) 351, 412
FaeI CATG 3 cut(s) 1000, 1087, 1267
FatI CATG 3 cut(s) 996, 1083, 1263
FauI CCCGC 1 cut(s) 1277
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 1069, 1209
Fsp4HI GCNGC 2 cut(s) 1069, 1209
FspBI CTAG 2 cut(s) 902, 965
GluI GCNGC 2 cut(s) 1069, 1209
GsaI CCCAGC 1 cut(s) 564
HaeIII GGCC 1 cut(s) 823
HapII CCGG 2 cut(s) 132, 267
Hin1II CATG 3 cut(s) 1000, 1087, 1267
HpaII CCGG 2 cut(s) 132, 267
HphI GGTGA 2 cut(s) 298, 717
Hpy166II GTNNAC 3 cut(s) 272, 394, 1151
Hpy188I TCNGA 4 cut(s) 328, 630, 885, 1378
Hpy188III TCNNGA 4 cut(s) 182, 452, 674, 1264
Hpy8I GTNNAC 3 cut(s) 272, 394, 1151
Hpy99I CGWCG 2 cut(s) 1159, 1409
HpyAV CCTTC 4 cut(s) 277, 732, 971, 1358
HpyCH4III ACNGT 5 cut(s) 276, 305, 1007, 1130, 1155
HpyCH4IV ACGT 4 cut(s) 247, 344, 361, 525
HpyCH4V TGCA 5 cut(s) 224, 549, 587, 773, 917
HpyF10VI GCNNNNNNNGC 3 cut(s) 566, 829, 1068
HpyF3I CTNAG 6 cut(s) 162, 388, 627, 697, 1251, 1288
HpySE526I ACGT 4 cut(s) 247, 344, 361, 525
Hsp92II CATG 3 cut(s) 1000, 1087, 1267
KpnI GGTACC 2 cut(s) 924, 1199
Kzo9I GATC 9 cut(s) 29, 97, 119, 402, 905, 932, 967, 1013, 1098
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 808
Lsp1109I GCAGC 2 cut(s) 1080, 1195
MaeI CTAG 2 cut(s) 902, 965
MaeII ACGT 4 cut(s) 247, 344, 361, 525
MaeIII GTNAC 5 cut(s) 52, 190, 305, 667, 784
MalI GATC 9 cut(s) 31, 99, 121, 404, 907, 934, 969, 1015, 1100
MboI GATC 9 cut(s) 29, 97, 119, 402, 905, 932, 967, 1013, 1098
MflI RGATCY 3 cut(s) 29, 905, 967
MhlI GDGCHC 1 cut(s) 946
MlsI TGGCCA 1 cut(s) 823
MluCI AATT 1 cut(s) 1018
MluNI TGGCCA 1 cut(s) 823
MlyI GAGTC 3 cut(s) 302, 653, 664
MmeI TCCRAC 1 cut(s) 681
Mox20I TGGCCA 1 cut(s) 823
MroXI GAANNNNTTC 2 cut(s) 525, 1316
MscI TGGCCA 1 cut(s) 823
MseI TTAA 6 cut(s) 446, 761, 863, 1233, 1307, 1353
Msp20I TGGCCA 1 cut(s) 823
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 2 cut(s) 132, 267
MspR9I CCNGG 2 cut(s) 1011, 1279
MvaI CCWGG 2 cut(s) 1011, 1279
MwoI GCNNNNNNNGC 3 cut(s) 566, 829, 1068
NdeII GATC 9 cut(s) 29, 97, 119, 402, 905, 932, 967, 1013, 1098
NlaIII CATG 3 cut(s) 1000, 1087, 1267
NlaIV GGNNCC 4 cut(s) 810, 907, 922, 1197
NmuCI GTSAC 3 cut(s) 305, 667, 784
NspV TTCGAA 1 cut(s) 529
PagI TCATGA 1 cut(s) 1263
PaqCI CACCTGC 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 2 cut(s) 402, 1344
PdmI GAANNNNTTC 2 cut(s) 525, 1316
PfeI GAWTC 7 cut(s) 146, 263, 455, 478, 1035, 1373, 1409
PfoI TCCNGGA 2 cut(s) 1009, 1277
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 2 cut(s) 1070, 1210
Ple19I CGATCG 1 cut(s) 122
PleI GAGTC 3 cut(s) 302, 652, 664
PpsI GAGTC 3 cut(s) 302, 652, 664
Psp1406I AACGTT 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 1009, 1277
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 2 cut(s) 1009, 1277
PspN4I GGNNCC 4 cut(s) 810, 907, 922, 1197
PspPI GGNCC 1 cut(s) 1007
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 3 cut(s) 29, 905, 967
PvuI CGATCG 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 3 cut(s) 577, 922, 1197
RsaNI GTAC 3 cut(s) 576, 921, 1196
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 6 cut(s) 446, 761, 863, 1233, 1307, 1353
SatI GCNGC 2 cut(s) 1069, 1209
Sau3AI GATC 9 cut(s) 29, 97, 119, 402, 905, 932, 967, 1013, 1098
Sau96I GGNCC 1 cut(s) 1007
SchI GAGTC 3 cut(s) 302, 653, 664
ScrFI CCNGG 2 cut(s) 1011, 1279
SduI GDGCHC 1 cut(s) 946
SfcI CTRYAG 3 cut(s) 9, 222, 1323
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 1 cut(s) 1007
Sse9I AATT 1 cut(s) 1018
SsiI CCGC 3 cut(s) 1211, 1270, 1334
SspMI CTAG 2 cut(s) 902, 965
StyD4I CCNGG 2 cut(s) 1009, 1277
TaaI ACNGT 5 cut(s) 276, 305, 1007, 1130, 1155
TaiI ACGT 4 cut(s) 250, 347, 364, 528
TaqI TCGA 6 cut(s) 118, 122, 529, 1157, 1172, 1404
TasI AATT 1 cut(s) 1018
TfiI GAWTC 7 cut(s) 146, 263, 455, 478, 1035, 1373, 1409
Tru1I TTAA 6 cut(s) 446, 761, 863, 1233, 1307, 1353
Tru9I TTAA 6 cut(s) 446, 761, 863, 1233, 1307, 1353
TscAI CASTG 5 cut(s) 310, 427, 751, 1135, 1393
TseFI GTSAC 3 cut(s) 305, 667, 784
TseI GCWGC 2 cut(s) 1068, 1208
Tsp45I GTSAC 3 cut(s) 305, 667, 784
TspDTI ATGAA 6 cut(s) 159, 276, 296, 371, 1100, 1325
TspRI CASTG 5 cut(s) 310, 427, 751, 1135, 1393
VpaK11BI GGWCC 1 cut(s) 1007
XapI RAATTY 1 cut(s) 1018
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 2 cut(s) 525, 1316
XspI CTAG 2 cut(s) 902, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.