RLG00000008738

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017148
Physical Location & Seq
Reverse (-)
36061584 .. 36062887
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008738

Sequence Viewer

Length: 1080 bp
ATGAAATTCAATGGAAGTGATATTATGAAGACAAGTAATATTGATCAGAGAGAAGATGAGAATTGTGTCAGACTAAGATCAATTGGTGCTTATCAAAATGAACCTAGTACCGAAATAGATGATCCTATATGCAAAAGCAGCAACAAGGAAAAGTCTGCTGCTGCCGTATTTTCCCATTCATCGGAGATGGAACACCATATTGATAATCAGTTTGGTAAAGAGAGAAGTTGTAGTGATAAAGAGTCTATGTGGTTGTCTTCAGATTGTTCATCACCTTCTGCATTTTTCAGGGAGTATAGATGGTCTGGTTCCTTTCATCTCTCACTTGATGAACACAATAATGTACACACAGATTTGATGGATGAAAAAGTAGCGACTCGACTACTTAGTTCAGCTACGAATGATACAAAACCAAGAGAGTCGTTGTGTGACGACTCAACAAATTGTGGAAACTCTTCAGCTCCTCTTAGCAGCACACCTAGTTCCTCTCAGATTTTAGATTTGGAGAGAATAGGTTACCAAGTATCTTTGTTGAATCTTGATGGGGATGATTACAAATGGATTCCAGATACAGAAGTTGAGTCATATTGTCTTCAATATGCTTTTCACTCTCCATCATACAAGACTAGGTCGGATCACGAAGCTGAGTTCTCTAATTCTTGTATTTCTACAGCCACTGAAGCACAAAATGAAAAACCAGGGTATTGTTTTCCTTCAGAACAAGCTTCAAAAGCTGTAGAGGTTGAAGAGTTGAATACAAATGAACCTCTTTTTTGGCCATTTGCTCAAAAAATTGATTGGAGTGCCGAAGCAACGTGGAACTGTTTTTCCATGTCACCGAGGAAAAGCATAGCAACTCTTGGAACTCCACTTGATTCAATTATATTAAGGCGTTATAGGGGCAGCATGGATCTCAAACAAGAGCGTAGGAGAAAACTAGAGATTAGCTTAGGATCAACAACATCAAAGATACCAGATATGAAGCAAAGCTACACCAAGGGTATCAAGGATATCCGAGAGATCTGTAATGTCCCTTCGAGGTTGAGCAGGTTCAACCATACTCCTGGAGTAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

40.62

Weight (kDa)

5.16

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05894 AT2G31480
prunus_persica Prupe.1G190600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407081
rosa_laevigata RLG00000008738
rosa_multiflora Rmu_sc0000600.1_g000001
rosa_roxburghii Rroxscaffold_5G00351810
rosa_rugosa Rorug04G0077900
rosa_samantha Rh4AG142600 Rh4BG140500 Rh4CG149100 Rh4DG136700
rosa_wichuraiana Rw4G011620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1038
AclWI GGATC 4 cut(s) 116, 642, 918, 961
AcoI YGGCCR 1 cut(s) 776
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 4 cut(s) 243, 441, 699, 699
AfaI GTAC 2 cut(s) 109, 345
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 8 cut(s) 10, 535, 596, 729, 746, 754, 879, 1054
AjnI CCWGG 2 cut(s) 697, 1063
AloI GAACNNNNNNTCC 2 cut(s) 812, 844
AluBI AGCT 7 cut(s) 395, 461, 644, 725, 734, 948, 990
AluI AGCT 7 cut(s) 395, 461, 644, 725, 734, 948, 990
AlwI GGATC 4 cut(s) 116, 642, 918, 961
AlwNI CAGNNNCTG 1 cut(s) 677
AoxI GGCC 1 cut(s) 776
ApeKI GCWGC 5 cut(s) 138, 158, 161, 471, 903
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 264, 828
BaeI ACNNNNGTAYC 2 cut(s) 561, 594
BalI TGGCCA 1 cut(s) 778
BarI GAAGNNNNNNTAC 4 cut(s) 974, 1006, 1018, 1050
BbsI GAAGAC 3 cut(s) 35, 249, 584
BbvI GCAGC 5 cut(s) 145, 148, 150, 483, 915
BccI CCATC 5 cut(s) 181, 294, 352, 536, 622
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 2 cut(s) 699, 1065
BclI TGATCA 1 cut(s) 43
BfaI CTAG 4 cut(s) 105, 480, 627, 938
BfmI CTRYAG 2 cut(s) 669, 735
BfuAI ACCTGC 1 cut(s) 1038
BglII AGATCT 1 cut(s) 1020
BisI GCNGC 5 cut(s) 139, 159, 162, 472, 904
BlsI GCNGC 5 cut(s) 140, 160, 163, 473, 905
Bme1390I CCNGG 2 cut(s) 699, 1065
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 2 cut(s) 699, 1065
BpiI GAAGAC 3 cut(s) 35, 249, 584
Bpu10I CCTNAGC 1 cut(s) 949
BsaJI CCNNGG 3 cut(s) 698, 839, 996
Bsc4I CCNNNNNNNGG 1 cut(s) 181
BseBI CCWGG 2 cut(s) 699, 1065
BseDI CCNNGG 3 cut(s) 698, 839, 996
BseGI GGATG 2 cut(s) 367, 553
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 503, 636
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 5 cut(s) 145, 148, 150, 483, 915
BshFI GGCC 1 cut(s) 778
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 1016
BsnI GGCC 1 cut(s) 778
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 7 cut(s) 43, 77, 121, 634, 910, 953, 1020
BspANI GGCC 1 cut(s) 778
BspCNI CTCAG 2 cut(s) 502, 637
BspLI GGNNCC 1 cut(s) 310
BspMI ACCTGC 1 cut(s) 1038
BspPI GGATC 4 cut(s) 116, 642, 918, 961
BsrGI TGTACA 1 cut(s) 343
BssECI CCNNGG 3 cut(s) 698, 839, 996
BssMI GATC 7 cut(s) 43, 77, 121, 634, 910, 953, 1020
BssT1I CCWWGG 1 cut(s) 996
Bst2UI CCWGG 2 cut(s) 699, 1065
Bst4CI ACNGT 1 cut(s) 824
Bst6I CTCTTC 2 cut(s) 460, 741
BstAUI TGTACA 1 cut(s) 343
BstDEI CTNAG 6 cut(s) 74, 386, 467, 489, 645, 949
BstEII GGTNACC 1 cut(s) 515
BstF5I GGATG 2 cut(s) 367, 553
BstKTI GATC 7 cut(s) 46, 80, 124, 637, 913, 956, 1023
BstMBI GATC 7 cut(s) 43, 77, 121, 634, 910, 953, 1020
BstMWI GCNNNNNNNGC 3 cut(s) 138, 680, 731
BstNI CCWGG 2 cut(s) 699, 1065
BstPI GGTNACC 1 cut(s) 515
BstSCI CCNGG 2 cut(s) 697, 1063
BstSFI CTRYAG 2 cut(s) 669, 735
BstV1I GCAGC 5 cut(s) 145, 148, 150, 483, 915
BstV2I GAAGAC 3 cut(s) 35, 249, 584
BstX2I RGATCY 2 cut(s) 910, 1020
BstXI CCANNNNNNTGG 1 cut(s) 1064
BstYI RGATCY 2 cut(s) 910, 1020
BsuRI GGCC 1 cut(s) 778
BtsCI GGATG 2 cut(s) 367, 553
BtsIMutI CAGTG 1 cut(s) 675
BveI ACCTGC 1 cut(s) 1038
CaiI CAGNNNCTG 1 cut(s) 677
Csp6I GTAC 2 cut(s) 108, 344
CviAII CATG 2 cut(s) 832, 907
CviJI RGCY 9 cut(s) 395, 461, 644, 674, 725, 734, 778, 948, 990
CviKI_1 RGCY 9 cut(s) 395, 461, 644, 674, 725, 734, 778, 948, 990
CviQI GTAC 2 cut(s) 108, 344
DdeI CTNAG 6 cut(s) 74, 386, 467, 489, 645, 949
DpnI GATC 7 cut(s) 45, 79, 123, 636, 912, 955, 1022
DpnII GATC 7 cut(s) 43, 77, 121, 634, 910, 953, 1020
EaeI YGGCCR 1 cut(s) 776
Eam1104I CTCTTC 2 cut(s) 460, 741
EarI CTCTTC 2 cut(s) 460, 741
Eco130I CCWWGG 1 cut(s) 996
Eco32I GATATC 1 cut(s) 1012
Eco57I CTGAAG 4 cut(s) 243, 441, 699, 699
Eco91I GGTNACC 1 cut(s) 515
EcoO65I GGTNACC 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 697, 1063
EcoRV GATATC 1 cut(s) 1012
EcoT14I CCWWGG 1 cut(s) 996
ErhI CCWWGG 1 cut(s) 996
FaeI CATG 2 cut(s) 835, 910
FaqI GGGAC 1 cut(s) 1016
FatI CATG 2 cut(s) 831, 906
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 5 cut(s) 139, 159, 162, 472, 904
FokI GGATG 2 cut(s) 374, 560
Fsp4HI GCNGC 5 cut(s) 139, 159, 162, 472, 904
FspBI CTAG 4 cut(s) 105, 480, 627, 938
GluI GCNGC 5 cut(s) 139, 159, 162, 472, 904
HaeIII GGCC 1 cut(s) 778
Hin1II CATG 2 cut(s) 835, 910
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 8 cut(s) 242, 376, 419, 434, 535, 562, 581, 875
HphI GGTGA 2 cut(s) 264, 828
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 8 cut(s) 48, 71, 184, 262, 492, 634, 718, 1016
Hpy188III TCNNGA 3 cut(s) 539, 566, 638
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 3 cut(s) 285, 723, 1044
HpyCH4III ACNGT 1 cut(s) 824
HpyCH4IV ACGT 1 cut(s) 815
HpyCH4V TGCA 2 cut(s) 132, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 680, 731
HpyF3I CTNAG 6 cut(s) 74, 386, 467, 489, 645, 949
HpySE526I ACGT 1 cut(s) 815
Hsp92II CATG 2 cut(s) 835, 910
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 7 cut(s) 43, 77, 121, 634, 910, 953, 1020
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 8 cut(s) 274, 291, 579, 684, 711, 987, 1033, 1050
Lsp1109I GCAGC 5 cut(s) 145, 148, 150, 483, 915
MaeI CTAG 4 cut(s) 105, 480, 627, 938
MaeII ACGT 1 cut(s) 815
MaeIII GTNAC 3 cut(s) 428, 515, 834
MalI GATC 7 cut(s) 45, 79, 123, 636, 912, 955, 1022
MboI GATC 7 cut(s) 43, 77, 121, 634, 910, 953, 1020
MboII GAAGA 6 cut(s) 40, 65, 249, 447, 584, 758
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 2 cut(s) 910, 1020
MlsI TGGCCA 1 cut(s) 778
MluCI AATT 7 cut(s) 5, 61, 81, 442, 655, 792, 879
MluNI TGGCCA 1 cut(s) 778
MlyI GAGTC 5 cut(s) 251, 370, 428, 428, 590
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 6 cut(s) 474, 496, 733, 777, 834, 1032
Mox20I TGGCCA 1 cut(s) 778
MroXI GAANNNNTTC 1 cut(s) 454
MscI TGGCCA 1 cut(s) 778
MseI TTAA 1 cut(s) 887
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 778
MspR9I CCNGG 2 cut(s) 699, 1065
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 2 cut(s) 699, 1065
MwoI GCNNNNNNNGC 3 cut(s) 138, 680, 731
NdeII GATC 7 cut(s) 43, 77, 121, 634, 910, 953, 1020
NlaIII CATG 2 cut(s) 835, 910
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 428, 834
PdmI GAANNNNTTC 1 cut(s) 454
PfeI GAWTC 3 cut(s) 535, 562, 875
PflFI GACNNNGTC 1 cut(s) 628
PfoI TCCNGGA 1 cut(s) 1063
PkrI GCNGC 5 cut(s) 140, 160, 163, 473, 905
PleI GAGTC 5 cut(s) 250, 370, 427, 428, 589
PpsI GAGTC 5 cut(s) 250, 370, 427, 428, 589
Psp6I CCWGG 2 cut(s) 697, 1063
PspEI GGTNACC 1 cut(s) 515
PspGI CCWGG 2 cut(s) 697, 1063
PspN4I GGNNCC 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 2 cut(s) 910, 1020
PsyI GACNNNGTC 1 cut(s) 628
RsaI GTAC 2 cut(s) 109, 345
RsaNI GTAC 2 cut(s) 108, 344
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 1 cut(s) 887
SatI GCNGC 5 cut(s) 139, 159, 162, 472, 904
Sau3AI GATC 7 cut(s) 43, 77, 121, 634, 910, 953, 1020
SchI GAGTC 5 cut(s) 251, 370, 428, 428, 590
ScrFI CCNGG 2 cut(s) 699, 1065
SfcI CTRYAG 2 cut(s) 669, 735
SmiMI CAYNNNNRTG 1 cut(s) 339
Sse9I AATT 7 cut(s) 5, 61, 81, 442, 655, 792, 879
SspI AATATT 1 cut(s) 40
SspMI CTAG 4 cut(s) 105, 480, 627, 938
StyD4I CCNGG 2 cut(s) 697, 1063
StyI CCWWGG 1 cut(s) 996
TaaI ACNGT 1 cut(s) 824
TaiI ACGT 1 cut(s) 818
TaqI TCGA 2 cut(s) 379, 1037
TasI AATT 7 cut(s) 5, 61, 81, 442, 655, 792, 879
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 3 cut(s) 535, 562, 875
Tru1I TTAA 1 cut(s) 887
Tru9I TTAA 1 cut(s) 887
TscAI CASTG 1 cut(s) 682
TseFI GTSAC 2 cut(s) 428, 834
TseI GCWGC 5 cut(s) 138, 158, 161, 471, 903
Tsp45I GTSAC 2 cut(s) 428, 834
TspRI CASTG 1 cut(s) 682
Tth111I GACNNNGTC 1 cut(s) 628
XapI RAATTY 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 454
XspI CTAG 4 cut(s) 105, 480, 627, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.