Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000600.1

Orthogroup ID

OG0017148

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2322

Gene Structure 2322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000600.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1043 bp

atgaaattcaatggaagtgatattatgaagacaagtaatattgatcagagagaagatgagtattgtgtcagactaagatcaattggtgcttatcaaaatgaacctagtaccaaaaaacatgatcctatatgcaaaagcagcaacaaggaaaagtctgttgctgccgtactttcccattcatcggagaaggaacaccagattgttaatcagttgggtaaagagagaagtattagtgataaagagtcgatgtggttgtcttcagattgttcatcaccttctgcatttttcagggagtatagatggtctggttcctttcatctctcacttgatgaacacaagaatgtacacacagatttgatggatgaaaaagtagcgagtcgactacttagttcagctatgaatgatgcaaaaccaagagagtcgctgtgtgatgactcaacaagttgtggaaactcttcagctcctcttagcagcacacttagttcctctcagattttagatttggagagaataggttaccaagtatctttgttgaatcttgatggggatgattacaaatggattccagatacagaagttgagtcatattgtcttcaatttgcttttcactctccatcatacaagactaggtcggatcacaaagctgagttcactaattcttgtatttctacagccactgaagcacaaaatgaaaaaccaggatattgttttccatcagatcaagcttcaaaagctgtagaggttgaagagttgaacacaaatgaacctcttttttggccatttgctcaaaaaattgattggagtgccgaagcaacttggaactgtttttccatgtcaccgcggaagagcatagcaactattggaactccacttgattcaattatattaaggcgttataggggcagcatggatctcaaacaagagcgtaggagaaaactagtgtttagcttaggatcaacaacatcaaagataccagatatgaaacaaataagctacaccaagggtatcaaggatatccgagagatctgtaatgccccttcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

39.19

Weight (kDa)

5.97

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05894 AT2G31480
prunus_persica	Prupe.1G190600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407081
rosa_laevigata	RLG00000008738
rosa_multiflora	Rmu_sc0000600.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351810
rosa_rugosa	Rorug04G0077900
rosa_samantha	Rh4AG142600 Rh4BG140500 Rh4CG149100 Rh4DG136700
rosa_wichuraiana	Rw4G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	379
AccII	CGCG	1 cut(s)	841
AciI	CCGC	2 cut(s)	839, 841
AclWI	GGATC	4 cut(s)	116, 642, 918, 961
AcoI	YGGCCR	1 cut(s)	776
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	3 cut(s)	243, 441, 699
AfaI	GTAC	3 cut(s)	109, 168, 345
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	7 cut(s)	10, 535, 596, 729, 746, 754, 879
AhlI	ACTAGT	1 cut(s)	937
AjnI	CCWGG	1 cut(s)	697
AloI	GAACNNNNNNTCC	2 cut(s)	812, 844
AluBI	AGCT	7 cut(s)	395, 461, 644, 725, 734, 948, 993
AluI	AGCT	7 cut(s)	395, 461, 644, 725, 734, 948, 993
AlwI	GGATC	4 cut(s)	116, 642, 918, 961
AlwNI	CAGNNNCTG	1 cut(s)	677
AoxI	GGCC	1 cut(s)	776
ApeKI	GCWGC	4 cut(s)	138, 161, 471, 903
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	264, 828
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BalI	TGGCCA	1 cut(s)	778
BarI	GAAGNNNNNNTAC	1 cut(s)	1021
BbsI	GAAGAC	3 cut(s)	35, 249, 584
BbvI	GCAGC	4 cut(s)	148, 150, 483, 915
BccI	CCATC	5 cut(s)	294, 352, 536, 622, 721
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	699
BclI	TGATCA	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	937
BfaI	CTAG	3 cut(s)	105, 627, 938
BfmI	CTRYAG	2 cut(s)	669, 735
BglII	AGATCT	1 cut(s)	1023
BisI	GCNGC	4 cut(s)	139, 162, 472, 904
BlsI	GCNGC	4 cut(s)	140, 163, 473, 905
Bme1390I	CCNGG	1 cut(s)	699
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	699
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	3 cut(s)	35, 249, 584
Bpu10I	CCTNAGC	1 cut(s)	949
BsaJI	CCNNGG	2 cut(s)	839, 999
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	2 cut(s)	839, 999
BseGI	GGATG	2 cut(s)	367, 553
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	503, 636
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	4 cut(s)	148, 150, 483, 915
Bsh1236I	CGCG	1 cut(s)	841
BshFI	GGCC	1 cut(s)	778
BslI	CCNNNNNNNGG	1 cut(s)	181
BsnI	GGCC	1 cut(s)	778
Bsp1407I	TGTACA	1 cut(s)	343
Bsp143I	GATC	8 cut(s)	43, 77, 121, 634, 718, 910, 953, 1023
BspACI	CCGC	2 cut(s)	839, 841
BspANI	GGCC	1 cut(s)	778
BspCNI	CTCAG	2 cut(s)	502, 637
BspFNI	CGCG	1 cut(s)	841
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	4 cut(s)	116, 642, 918, 961
BspQI	GCTCTTC	1 cut(s)	839
BsrGI	TGTACA	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	839, 999
BssMI	GATC	8 cut(s)	43, 77, 121, 634, 718, 910, 953, 1023
BssT1I	CCWWGG	1 cut(s)	999
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	1 cut(s)	824
Bst6I	CTCTTC	3 cut(s)	460, 741, 839
BstAUI	TGTACA	1 cut(s)	343
BstDEI	CTNAG	7 cut(s)	74, 386, 467, 479, 489, 645, 949
BstDSI	CCRYGG	1 cut(s)	839
BstEII	GGTNACC	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	367, 553
BstFNI	CGCG	1 cut(s)	841
BstKTI	GATC	8 cut(s)	46, 80, 124, 637, 721, 913, 956, 1026
BstMBI	GATC	8 cut(s)	43, 77, 121, 634, 718, 910, 953, 1023
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 680, 731
BstNI	CCWGG	1 cut(s)	699
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	697
BstSFI	CTRYAG	2 cut(s)	669, 735
BstUI	CGCG	1 cut(s)	841
BstV1I	GCAGC	4 cut(s)	148, 150, 483, 915
BstV2I	GAAGAC	3 cut(s)	35, 249, 584
BstX2I	RGATCY	2 cut(s)	910, 1023
BstYI	RGATCY	2 cut(s)	910, 1023
BsuRI	GGCC	1 cut(s)	778
BtgI	CCRYGG	1 cut(s)	839
BtsCI	GGATG	2 cut(s)	367, 553
BtsIMutI	CAGTG	1 cut(s)	675
CaiI	CAGNNNCTG	1 cut(s)	677
Cfr42I	CCGCGG	1 cut(s)	842
Csp6I	GTAC	3 cut(s)	108, 167, 344
CviAII	CATG	3 cut(s)	119, 832, 907
CviJI	RGCY	9 cut(s)	395, 461, 644, 674, 725, 734, 778, 948, 993
CviKI_1	RGCY	9 cut(s)	395, 461, 644, 674, 725, 734, 778, 948, 993
CviQI	GTAC	3 cut(s)	108, 167, 344
DdeI	CTNAG	7 cut(s)	74, 386, 467, 479, 489, 645, 949
DpnI	GATC	8 cut(s)	45, 79, 123, 636, 720, 912, 955, 1025
DpnII	GATC	8 cut(s)	43, 77, 121, 634, 718, 910, 953, 1023
EaeI	YGGCCR	1 cut(s)	776
Eam1104I	CTCTTC	3 cut(s)	460, 741, 839
EarI	CTCTTC	3 cut(s)	460, 741, 839
Eco130I	CCWWGG	1 cut(s)	999
Eco32I	GATATC	1 cut(s)	1015
Eco57I	CTGAAG	3 cut(s)	243, 441, 699
Eco91I	GGTNACC	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	697
EcoRV	GATATC	1 cut(s)	1015
EcoT14I	CCWWGG	1 cut(s)	999
ErhI	CCWWGG	1 cut(s)	999
FaeI	CATG	3 cut(s)	122, 835, 910
FatI	CATG	3 cut(s)	118, 831, 906
FbaI	TGATCA	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	4 cut(s)	139, 162, 472, 904
FokI	GGATG	2 cut(s)	374, 560
Fsp4HI	GCNGC	4 cut(s)	139, 162, 472, 904
FspBI	CTAG	3 cut(s)	105, 627, 938
GluI	GCNGC	4 cut(s)	139, 162, 472, 904
HaeIII	GGCC	1 cut(s)	778
Hin1II	CATG	3 cut(s)	122, 835, 910
HincII	GTYRAC	1 cut(s)	380
HindII	GTYRAC	1 cut(s)	380
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	8 cut(s)	242, 376, 419, 434, 535, 562, 581, 875
HphI	GGTGA	2 cut(s)	264, 828
Hpy166II	GTNNAC	3 cut(s)	346, 380, 651
Hpy188I	TCNGA	8 cut(s)	48, 71, 184, 262, 492, 634, 718, 1019
Hpy188III	TCNNGA	2 cut(s)	539, 566
Hpy8I	GTNNAC	3 cut(s)	346, 380, 651
HpyAV	CCTTC	2 cut(s)	181, 285
HpyCH4III	ACNGT	1 cut(s)	824
HpyCH4V	TGCA	3 cut(s)	132, 281, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 680, 731
HpyF3I	CTNAG	7 cut(s)	74, 386, 467, 479, 489, 645, 949
Hsp92II	CATG	3 cut(s)	122, 835, 910
Ksp22I	TGATCA	1 cut(s)	43
KspI	CCGCGG	1 cut(s)	842
Kzo9I	GATC	8 cut(s)	43, 77, 121, 634, 718, 910, 953, 1023
LguI	GCTCTTC	1 cut(s)	839
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	7 cut(s)	209, 274, 291, 579, 684, 711, 987
Lsp1109I	GCAGC	4 cut(s)	148, 150, 483, 915
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	3 cut(s)	105, 627, 938
MaeIII	GTNAC	2 cut(s)	515, 834
MalI	GATC	8 cut(s)	45, 79, 123, 636, 720, 912, 955, 1025
MboI	GATC	8 cut(s)	43, 77, 121, 634, 718, 910, 953, 1023
MboII	GAAGA	7 cut(s)	40, 65, 249, 447, 584, 758, 856
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	2 cut(s)	910, 1023
MlsI	TGGCCA	1 cut(s)	778
MluCI	AATT	6 cut(s)	5, 81, 596, 655, 792, 879
MluNI	TGGCCA	1 cut(s)	778
MlyI	GAGTC	5 cut(s)	251, 385, 428, 428, 590
MmeI	TCCRAC	1 cut(s)	612
MnlI	CCTC	4 cut(s)	474, 496, 733, 777
Mox20I	TGGCCA	1 cut(s)	778
MroXI	GAANNNNTTC	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	778
MseI	TTAA	2 cut(s)	204, 887
MslI	CAYNNNNRTG	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	778
MspA1I	CMGCKG	1 cut(s)	841
MspR9I	CCNGG	1 cut(s)	699
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	699
MvnI	CGCG	1 cut(s)	841
MwoI	GCNNNNNNNGC	3 cut(s)	138, 680, 731
NdeII	GATC	8 cut(s)	43, 77, 121, 634, 718, 910, 953, 1023
NlaIII	CATG	3 cut(s)	122, 835, 910
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	834
PciSI	GCTCTTC	1 cut(s)	839
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	3 cut(s)	535, 562, 875
PflFI	GACNNNGTC	1 cut(s)	628
PkrI	GCNGC	4 cut(s)	140, 163, 473, 905
PleI	GAGTC	5 cut(s)	250, 384, 427, 428, 589
PpsI	GAGTC	5 cut(s)	250, 384, 427, 428, 589
Psp6I	CCWGG	1 cut(s)	697
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	910, 1023
PsyI	GACNNNGTC	1 cut(s)	628
RsaI	GTAC	3 cut(s)	109, 168, 345
RsaNI	GTAC	3 cut(s)	108, 167, 344
RseI	CAYNNNNRTG	1 cut(s)	339
SacII	CCGCGG	1 cut(s)	842
SalI	GTCGAC	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	839
SaqAI	TTAA	2 cut(s)	204, 887
SatI	GCNGC	4 cut(s)	139, 162, 472, 904
Sau3AI	GATC	8 cut(s)	43, 77, 121, 634, 718, 910, 953, 1023
SchI	GAGTC	5 cut(s)	251, 385, 428, 428, 590
ScrFI	CCNGG	1 cut(s)	699
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	2 cut(s)	669, 735
Sfr303I	CCGCGG	1 cut(s)	842
SgrBI	CCGCGG	1 cut(s)	842
SmiMI	CAYNNNNRTG	1 cut(s)	339
SpeI	ACTAGT	1 cut(s)	937
Sse9I	AATT	6 cut(s)	5, 81, 596, 655, 792, 879
SsiI	CCGC	2 cut(s)	839, 841
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	3 cut(s)	105, 627, 938
StyD4I	CCNGG	1 cut(s)	697
StyI	CCWWGG	1 cut(s)	999
TaaI	ACNGT	1 cut(s)	824
TaqI	TCGA	3 cut(s)	245, 379, 1040
TasI	AATT	6 cut(s)	5, 81, 596, 655, 792, 879
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	3 cut(s)	535, 562, 875
Tru1I	TTAA	2 cut(s)	204, 887
Tru9I	TTAA	2 cut(s)	204, 887
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	834
TseI	GCWGC	4 cut(s)	138, 161, 471, 903
Tsp45I	GTSAC	1 cut(s)	834
TspRI	CASTG	1 cut(s)	682
Tth111I	GACNNNGTC	1 cut(s)	628
XapI	RAATTY	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	454
XspI	CTAG	3 cut(s)	105, 627, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.